| Id Trinity | TRINITY_DN52550_c0_g1_i21 |
|---|---|
| Name Transcript | Ll_transcript_505771 |
| Sequence | CACTCTCTCTCTCTCTGTAATGGAGCTTCGCTTACGGTTTCTGACTTCACTCTCTCTGTTACAGCTATGTCTCATTTTATCATTCACAAAAGCACACAAT TTATCTACAACCCTTCTTACAACACCGGGGGAAAAGCATTCTGAGAATTATTGTGCAATGTATGACCTTTGTGGAACACGCAGTGATGGTAAAGTATTGA ATTGTCCATATGGTTCCCCAGCTGTGAAGCCAGATGATTTGCTCTCATCGAAGATTCAAAGTTTGTGTCCAAAAATTACTGGGAATGTTTGTTGTACAGA AGCTCAGTTTGACACATTAAAGAAGCAAGTCCAACAGGCAATTCCTTTTCTTGTAGGGTGTCCTGCATGCTTAAGAAACTTTTTGAATCTGTTCTGCGAG CTTACATGTTCTCCAAATCAGAGTTTATTTATCAATGTGACTTCAGCTGACAAGGTTGGTGGTAATTTGACAGTGGGTGCGATTGATTTTTTTGTAGCTG ATGCTTTTGGTGAAGGGTTATTTGAGTCCTGTAAGGAAGTAAAGTTTGGCACCATGAATTCCCGAGCTCTACAATTTATTGGTGCTGGTGCTCAAAATTT TATGGAATGGTTTGCATTTATTGGTAGAAAGGCGGCCCCTAATAGTCCTGGTTCACCATATGCAATTACATTCCATCCAAATGCAAGCAAATCATCTGGC ATGAAACCTATGAATGTTTCAACTTATTCATGTGGTGATGTTTCTCTTGGCTGCTCTTGCGGTGACTGTCCTTCATCCTCAGTGTGCTCTAGTTCACCTT CAACGACCACCCATAAGAGGGACTCCTGCTCCATTAAAGTTGGGTCTTTAACGGTGAAGTGTGTTGATTTGATTTTAACAGTCTTATACATTATACTGGT TTCTGTGTTCTTGGGTTGGGGATTGTATCATCGGATAAGGGAAAGAAAACCAGCATCCCAAACAGGACCGGTGTCTAATATCATTAGTGGTGGTGTGCAG CATTCTTTAGATAGGGAGAAGGATGATAACCTCCCAACGCAGGTTCATATGATGCAAGATGATGCACTAAACAGAAATGAGGTCCGGCTCTCAGCAGTGC AAGGATACATGTCCATATTTTACAGGAAATATGGATCATATGTAGCTAAGAATCCAATTAAGGTCTTGTCTTCATCACTGGCCATATTTCTTCTACTCTG TCTAGGTCTAATTCGGTTCAAGGTTGAAACACGACCTGAGAAGCTCTGGGTAGCACCTGGGAGTAATGCAGCACGAGAGAAACAGTTTTTTGATAGCCAC CTTGCTCCATTTTACAGAATTGAACAGCTCATACTGGCAACAGTTCCAGATCATGTGAATAAAACAGCACCAAGAATTGTGTCAAAAGACAACATTGAGT TTCTATTTGAAATACAAAAAAAGGTTGATGCAATCCGTGCTAATTATTCTGGCTCGATGGTATCTCTCCAAGACATCTGTTTGAAGCCACTGGACAAAGA TTGTGCCACTCAAAGTGTCCTGCAGTACTTCAAAATGGACCCAAATAATTTCGGCGATTATGGGGGAGCTGATCATCTTACTTACTGTTTCGAGGTAACA ATTAACAAATGTTAACTTTACATCTTGAAATTCATTGTTCTAGTAGATGTTCTTAATTTCAGCTGTTATTTTTGCAAGACCACATGGAAAAAGGTTCCCA AGATCTCCTGCCTGACTGCACAAATGTATTCAATGATCAATGATATCATTTTCTCTGTGCACACTTTCATGCTTTGAGCAATGAGTGATTTAGTACCTAG CCTACTACTTGAAATACATTTTCAGTTGCATTTGTACTATATTCTAATTCTTATTCTAATATGACATAACGATTACTGTTCAAAGCATATTTAATTATTT ATCTAGTGGTTGATATGTATGGTTGGTACATGCATTTAGGAGGGTATCATTTAGATTGAAATCTTCTTGAATATTATAGGATTGTCTATATCTTGGGGAA GTTTGGGAGAGGGCATGCATGTTCTGAGCTTCTCGCCTGCACTCCATTACACATTGCATCAATTTTAGATTTATAACTATGAATAAACCTTTGTCTGATA ACACTGATATGGTATTTTCTGCTCTTACTATCTGAAGACATCAATCTGAAGCTTGGTTGCTGTTTGCTGTCTGGAGACATCAACCTGAAACTTTATCCAT GACATGGACAATTACATTCATATATGTATAATATAAATGCAAAAACGATCTGATTATTTTATAACTTTACATTCATTCAGCATTATACCTCAGCAGACCA ATGTCTGAGCAGCTTTAAAGCTCCTCTTGATCCAAGCACCGTGTTAGGAGGTTTCTCTGGGAATAATTATTCTGCGGCATCTGCGTTTGTTGTAACTTAT CCAGTAAATAATGCCATTGATGAAGAAGGTAATCAAAATGCTAAGGCAGTTGCTTGGGAGAAGGCCTTTATTCAGTTGGTGAAGGGTGAGCTTTTACCAA TGGTGAAATCAAGAAATTTGACGCTTGCTTTTTCCTCTGAAAGCTCGATTGAGGAAGAGTTAAAAAGAGAAAGTACCGCAGATGCTATTACTATATTGAT TAGCTATATTGTGATGTTCGCGTATATATCTCTTACTTTGGGGGATACACCACATCTTTCTTCTTTCTATATTTCATCTAAGGTATTGCTTGGTCTTGCA GGAGTAATGCTTGTTTTGCTGTCTGTCCTTGGATCAGTCGCACTATTTAGTGCCATTGGTGTAAAATCTACACTGATCATCATGGAAGTTATCCCATTTC TTGTTCTAGCTGTTGGTGTGGACAATATGTGTATACTCGTTCATGCCGTAAAAAGGCAACAAATGGATTTGCCTTTAGAAGGACGAATAAGCAATGCACT TGTGGAAGTTGGACCATCTATAACACTGGCTAGTCTATCAGAGGTTTTAGCATTTGCAGTTGGAAGCTTTATTTCAATGCCTGCATGCCGTGTGTTCTCC ATGTTTGCTGCATTGGCTGTTCTTTTGGATTTTATCCTGCAAGTTACTGCTTTTGTTGCTCTGATAGTTATCGACTCTTTGCGAGCTGAGGATAAGAGAG TTGATTGTTTTCCATGCATAAAAGTGCGTTCAATGCGTGTGGATTTTGATAAAGGTGTTGGACAAAGTAAACCTGGTTTCTTGACTCGATTTATGAAGGA GGTTCTTGCACCCATTCTGAGTATATGGGGAGTAAAAATAGCTGTCATTGCTATTTTTACAGGATTTGCATTGGCTAGCATTG BLAST |
| Tissue | pods |
| Gene name | LI_gene_193639; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_505771
| Blastp | Niemann-Pick C1 protein from Sus with 31.77% of identity |
|---|---|
| Blastx | Niemann-Pick C1 protein from Homo with 44.92% of identity |
| Eggnog | Niemann-Pick disease type C1(ENOG410XR54) |
| Kegg | Link to kegg annotations (397591) |
| CantataDB | Link to cantataDB annotations (CNT0002821) |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019414832.1) |
| Pfam | Niemann-Pick C1 N terminus (PF16414.4) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |