| Id Trinity | TRINITY_DN52550_c0_g1_i28 |
|---|---|
| Name Transcript | Ll_transcript_505779 |
| Sequence | CATTCTTTTACTCTCTCTGCTTCACTCAGAAAACAACACAACTTCAACACTTTTCAACATTCCCTTTCTCACATGGACCGTACCTTCTTCTTTCTTTTTC TCTTTCAGCTATGTATAATTTTATCATTAGCAAAAGCAGACAATTTGACTACAAGCCTTATTTCGAAATCCGGTGATACAACTTCGGGGGAAAGACATTC TGAGAATTATTGTGCAATGTATGACATTTGCGGAAAGCGCAGTGATGATAAAGTATTGAACTGTCCATATGGTTCTGCAGCAGTGAAGCCAAATGATTTG CTCTCATCAAAGATCCAAAGTTTATGCCCAACAATTACAGGGAATGTTTGTTGTACAGAAGCTCAGTTTGACACATTAAAGACACAAGTCCAACAGGCAC TTCCTTTTCTTGTAGGTTGTCCTGCATGCTTAAGAAACTTTTTGAACCTGTTCTGTGAGCTTACATGTTCTCCAGATCAAAGTTTATTTATCAATGTGAC TTCAGTTGACAAGGTTGGTGGTAATTTGACAGTGGGAGGGATTGATTATTTTGTAAATGATGCTTTTGGTGAAGGGTTATATGAGTCCTGCAAGGAAGTA AAGTTTGGCACCATGAACACTCTAGCTCTACAATTTCTTGGTGCAGGTGCTCAAAATTTTAGAGGTAAATTGTATTTTTAAATATTTAGCCATATATCGT TCCTATTTCTCATATTTATATGATTGTATCAATCATTTCATGTTGCCTTGATGAGTTGTAGAAGCATAAATCAATTGTTATGCATCACAAATGCTCTGCA TATGGAAAGCTATACGTCTACGTGACATCTAACTTATTTTCATGGCTGCTGTGCATACCGGAGAGAATTAAGAGTGAGATGTAGATGGATGCATCAGAAT TCATGGTTTATCATTTTTTATATTTGTTTTATAACTCTCTAGAAATGATGATGATAATACTAATAATATATGCAATGATGGAGACAAACATGTTGTGCAG CTTTTGAGTATAATACTTGAGTGGTACACTTTTATTGGTAGAAAAGCAGCCCTTAATAGTCCTGGTTCACCATATGCAATTACGTTCCGTCCAAATGCAA CCATGTCATCTGGCATGAAACCTATGAATGTTTCAACATATTCATGTGGTGACATTTCTCTTGGATGCTCTTGCGGTGACTGTCCTTCATCTTCAGTGTG CTCTAGCTCACCTTCAACAACCACCCATAAGAAGGATTCCTGCTCCATTAAAGCTGGGTCTTTAACGGTGAAGTGTGTTGATTTGATTTTAACAGTCTTA TACATCATACTGATTTCTGTGTTCTTGGGTTGGGGATTGTATCATCGGATAAGGGAAAGAAAACCGGAATACAGAACAAGACCAGTGTCTAATATCATTA GTGGTGGGGTGCTTCATTCTCTTGATAGGGAGAAGGATGAGAACCTCCCAATGCAGGTTCATATGATGCAAGATGTTGCACAAAACCGAAATGAGGTCCA GCTCTCAGTAGTGCAACGATACATGTCAATCTTTTACAGGAAATATGGATCATATGTAGCTAAAAATCCAATTACTGTCTTGTTTTCATCTTTGGCTATA GTTCTTCTACTCTGTCTAGGTCTAATCCGATTCAAGGTCGAAACACGGCCTGAGAAGGTAAGAAAAAGATAGTTGCTTTCCATTCTTTGAAATGTTCTGT TTAATTCTAGTATTCTACTATCTTCCTAAACAAGTTGTATCCATCTGTTTGAAAGTGAAGTTTGCTTTTCTTTAACATCCGATGATGATTTATAGTGATG GTTGAAAATAAGGCTGATGCCATAATTTGAGATTTTTTTGATGTGGGCAAAGTTATAGTTGAAAAATTGTTTTGTGTGAGAATCAAGAAGTATCATTAAC ATTGTGTTATTATAGTTTAATTTTAAGTGTATAGGCTACTTGATTTCCAATTAATTCTCTCTTCTTTTACATATATGTATACTTGTCTCTATTTTGGAGT TTGTGGAAATAACTTCCTAGACCTTTCAGCTTTGGGTAGGACCTGGGAGTAAAGCAGCACAAGAGAAACAGTTTTTTGATAGCCATCTTGCTCCGTTTTA CAGAATTGAACAGCTCATACTGGCAACAGTTCCAAATCATGTGAATAATACATCCCCAAAAATTGTGTCTGAGGACAACATTATGTTCCTATTTGAAATA CAAAAAAAGGTTGATGCAATCCGTGCTAATCATTCTGGCTTGATGATATCTCTCCAAGACATCTGTATGAAGCCACTAGACAAAGATTGTGCCACTCAAA GTGTCCTGCAGTACTTCAAAATGGACCCCGGAAATTTTGATGATTATGGGGGAGTTGACCATCTTAATTATTGTTTTCAGCATTATACCTCAGCAGACCA ATGTATGAGTGCATTTCAAGCTCCTCTTGATCCAAGCACCGTGTTAGGAGGTTTCTCTGGGAATGATTATTCTGCGGCATCTGCATTTATCGTAACCTAT CCAGTAAATAATGCTATTGATGAAGAAGGTAATGAAACCGCTAATGCAGTTGCTTGGGAGAAGACCTTTATTCAGTTGGTGAAGGATGAGCTTTTACCAA TGGTGCAATCACGAAATTTGACGCTTGCTTTTTCCTCTGAAAGCTCGATTGAGGAAGAGTTAAAAAGAGAAAGTACCGCAGATGCTATTACTATATTGAT TAGCTATCTCGTGATGTTTGCTTATATATCTCTTGCTTTAGGGGATACACCACATCTTTCTTCTTTCTATATTTCATCTAAGGTATTGCTTGGTCTTGCA GGAGTAATGCTTGTTATGCTGTCTGTCCTTGGATCAGTTGGTTTTTTTAGTGCACTTGGTGTAAAATCTACACTGATCATCATGGAAGTTATCCCATTTC TTGTGCTAGCTGTTGGTGTAGATAATATGTGTATACTTGTTCATGCTGTGAAAAGGCAACAGCTGAATTTACCTTTAGAAGGACGAATAAGCAATGCACT TGTGGAAGTTGGACCATCAATAACATTGGCTAGTCTATCAGAGGTTTTAGCATTTGCAGTTGGGAGCTTTATTTCAATGCCTGCGTGCCGTGTGTTCTCC ATGTTTGCTGCATTGGCTGTTCTATTGGACTTTCTCCTGCAAGTCACTGCTTTTGTTGCTCTGATAGTTCTTGACTCTTTGAGAGCAGAGGACAAGAGAG TTGATTGTTTTCCATGCATAAAAGTGCATTCAATGCATGTGGATTTTGATAAAGGTGTTGGACAAAGTAAACCTGGTTTCTTGACTCGATTTATGAAGGA GGTTCTTGCACCCATTCTGAGTATATGGGGAGTAAAAATAGCTGTCATTGCTATTTTTACAGGATTTGCATTGGCTAGCATTGCATTAAGCACTAGAATT GAACCTGGTTTGGCACAGAACATTGTTCTTCCTCGAAACTCATATCTTCAGGGTTATTTCAATAACGTTTCAGAATATCTCAGGGTTGGACCACCTTTGT ATTTTGTAGTGAAGAACTATAACTACAGCTCTGAATCACTGCATACAAATCAGCTTTGCTCCATTAGCCAATGCAATTCAGACTCTCTTTTAAATGAGAT TGCTAGAGCAGCCCTAGTACCAGACACAAGTTATATAGCCAAGCCAGCCGCTTCGTGGCTTGATGATTTTCTTGTGTGGGTATCTCCAGAAGCATTTGGG TGCTGCAGGAAGTTCATGAACGGGAGTTATTGCCCCCCTGATGATCAGCCTCCTTGTTGTGCTGCTGGTGAAGGTTCTTGTGTTTCAGATGGAGTATGTA AAGATTGCACAACGTGTTTCCGTCACACAGATCTCCACAATGGTCGTGCATCTACAACACAATTTAGGGAGAAACTGCCATGGTTTCTTAGTGCTCTGCC GTCTGCTGATTGTGCAAAAGGTGGTCATGGAGCTTACACAGGCAGTGTTGAACTGAAAGGCTATGAAAGTGGCATTATACAAGCATCATCATTCCGCACA TATCATACCCCACTCAACAAGCAGAGTGACTTTGTTAATTCAATGAGGGCTGCTCAAGAGTTTTGTTCGAGAGTTTCTGATTCTTTAAAGATTGAGATCT TCCCATATTCAGTGTTTTATATGTTTTTCGAGCAATACCTAAATATATGGAAAACTGCATTGGTCAACCTTGCTATAGCCATTGGTGCAGTATATATTGT GTGCTTGGCTATCACGTGTAGTTTTTGTAGTTCAACAATCATTTTGTTGGTGTTGGTGATGATTGTCGTTGATCTTTTGGGTGTGATGGCCATTCTAAAA ATCCAGTTGAATGCTATTTCGGTGGTCAACCTTGTTATGTCAGTGGGGATTGCTGTTGAGTTTTGTGTGCATATCACTCATTCTTTTACTGTAACAAGTG GAGACAAAGATTTGCGTGTGAAGGAGGCTCTGGGTACAATGGGAGCTTCAGTCTTCAGTGGTATCACATTAACAAAGCTGGTTGGAGTTATTGTTCTTTG CTTCTCAAGGACAGAAGTTTTTGTGGTTTATTACTTTCAAATGTACTTG BLAST |
| Tissue | pods |
| Gene name | LI_gene_193639; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_505779
| Blastp | Niemann-Pick C1 protein from Mus with 39.13% of identity |
|---|---|
| Blastx | Niemann-Pick C1 protein from Sus with 39.26% of identity |
| Eggnog | Niemann-Pick disease type C1(ENOG410XR54) |
| Kegg | Link to kegg annotations (18145) |
| CantataDB | Link to cantataDB annotations (CNT0002821) |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019438101.1) |
| Pfam | Patched family (PF02460.17) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |