Id Trinity | TRINITY_DN52550_c0_g1_i34 |
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Name Transcript | Ll_transcript_505786 |
Sequence | CATTCTTTTACTCTCTCTGCTTCACTCAGAAAACAACACAACTTCAACACTTTTCAACATTCCCTTTCTCACATGGACCGTACCTTCTTCTTTCTTTTTC TCTTTCAGCTATGTATAATTTTATCATTAGCAAAAGCAGACAATTTGACTACAAGCCTTATTTCGAAATCCGGTGATACAACTTCGGGGGAAAGACATTC TGAGAATTATTGTGCAATGTATGACATTTGCGGAAAGCGCAGTGATGATAAAGTATTGAACTGTCCATATGGTTCTGCAGCAGTGAAGCCAAATGATTTG CTCTCATCAAAGATCCAAAGTTTATGCCCAACAATTACAGGGAATGTTTGTTGTACAGAAGCTCAGTTTGACACATTAAAGACACAAGTCCAACAGGCAC TTCCTTTTCTTGTAGGTTGTCCTGCATGCTTAAGAAACTTTTTGAACCTGTTCTGTGAGCTTACATGTTCTCCAGATCAAAGTTTATTTATCAATGTGAC TTCAGTTGACAAGGTTGGTGGTAATTTGACAGTGGGAGGGATTGATTATTTTGTAAATGATGCTTTTGGTGAAGGGTTATATGAGTCCTGCAAGGAAGTA AAGTTTGGCACCATGAACACTCTAGCTCTACAATTTCTTGGTGCAGGTGCTCAAAATTTTAGAGGTAAATTGTATTTTTAAATATTTAGCCATATATCGT TCCTATTTCTCATATTTATATGATTGTATCAATCATTTCATGTTGCCTTGATGAGTTGTAGAAGCATAAATCAATTGTTATGCATCACAAATGCTCTGCA TATGGAAAGCTATACGTCTACGTGACATCTAACTTATTTTCATGGCTGCTGTGCATACCGGAGAGAATTAAGAGTGAGATGTAGATGGATGCATCAGAAT TCATGGTTTATCATTTTTTATATTTGTTTTATAACTCTCTAGAAATGATGATGATAATACTAATAATATATGCAATGATGGAGACAAACATGTTGTGCAG CTTTTGAGTATAATACTTGGTAAGACATATTATAGTACATTATATTTTCTTTTCAAGTTAACCTTTCTGGATTGCCCCTCTTTAACTGAATTTTTGTATA CTGTTGTCCCTCTGGATTGTCTCTTTAGCTTGAAAGGCTTGATGCTTATATTGAAACTGATTTTGGCAGAGTGGTACACTTTTATTGGTAGAAAAGCAGC CCTTAATAGTCCTGGTTCACCATATGCAATTACGTTCCGTCCAAATGCAACCATGTCATCTGGCATGAAACCTATGAATGTTTCAACATATTCATGTGGT GACATTTCTCTTGGATGCTCTTGCGGTGACTGTCCTTCATCTTCAGTGTGCTCTAGCTCACCTTCAACAACCACCCATAAGAAGGATTCCTGCTCCATTA AAGCTGGGTCTTTAACGGTGAAGTGTGTTGATTTGATTTTAACAGTCTTATACATCATACTGATTTCTGTGTTCTTGGGTTGGGGATTGTATCATCGGAT AAGGGAAAGAAAACCGGAATACAGAACAAGACCAGTGTCTAATATCATTAGTGGTGGGGTGCTTCATTCTCTTGATAGGGAGAAGGATGAGAACCTCCCA ATGCAGGTTCATATGATGCAAGATGTTGCACAAAACCGAAATGAGGTCCAGCTCTCAGTAGTGCAACGATACATGTCAATCTTTTACAGGAAATATGGAT CATATGTAGCTAAAAATCCAATTACTGTCTTGTTTTCATCTTTGGCTATAGTTCTTCTACTCTGTCTAGGTCTAATCCGATTCAAGGTCGAAACACGGCC TGAGAAGCTTTGGGTAGGACCTGGGAGTAAAGCAGCACAAGAGAAACAGTTTTTTGATAGCCATCTTGCTCCGTTTTACAGAATTGAACAGCTCATACTG GCAACAGTTCCAAATCATGTGAATAATACATCCCCAAAAATTGTGTCTGAGGACAACATTATGTTCCTATTTGAAATACAAAAAAAGGTTGATGCAATCC GTGCTAATCATTCTGGCTTGATGATATCTCTCCAAGACATCTGTATGAAGCCACTAGACAAAGATTGTGCCACTCAAAGTGTCCTGCAGTACTTCAAAAT GGACCCCGGAAATTTTGATGATTATGGGGGAGTTGACCATCTTAATTATTGTTTTCAGCATTATACCTCAGCAGACCAATGTATGAGTGCATTTCAAGCT CCTCTTGATCCAAGCACCGTGTTAGGAGGTTTCTCTGGGAATGATTATTCTGCGGCATCTGCATTTATCGTAACCTATCCAGTAAATAATGCTATTGATG AAGAAGGTAATGAAACCGCTAATGCAGTTGCTTGGGAGAAGACCTTTATTCAGTTGGTGAAGGATGAGCTTTTACCAATGGTGCAATCACGAAATTTGAC GCTTGCTTTTTCCTCTGAAAGCTCGATTGAGGAAGAGTTAAAAAGAGAAAGTACCGCAGATGCTATTACTATATTGATTAGCTATCTCGTGATGTTTGCT TATATATCTCTTGCTTTAGGGGATACACCACATCTTTCTTCTTTCTATATTTCATCTAAGGTATTGCTTGGTCTTGCAGGAGTAATGCTTGTTATGCTGT CTGTCCTTGGATCAGTTGGTTTTTTTAGTGCACTTGGTGTAAAATCTACACTGATCATCATGGAAGTTATCCCATTTCTTGTGCTAGCTGTTGGTGTAGA TAATATGTGTATACTTGTTCATGCTGTGAAAAGGCAACAGCTGAATTTACCTTTAGAAGGACGAATAAGCAATGCACTTGTGGAAGTTGGACCATCAATA ACATTGGCTAGTCTATCAGAGGTTTTAGCATTTGCAGTTGGGAGCTTTATTTCAATGCCTGCGTGCCGTGTGTTCTCCATGTTTGCTGCATTGGCTGTTC TATTGGACTTTCTCCTGCAAGTCACTGCTTTTGTTGCTCTGATAGTTCTTGACTCTTTGAGAGCAGAGGACAAGAGAGTTGATTGTTTTCCATGCATAAA AGTGCATTCAATGCATGTGGATTTTGATAAAGGTGTTGGACAAAGTAAACCTGGTTTCTTGACTCGATTTATGAAGGAGGTTCTTGCACCCATTCTGAGT ATATGGGGAGTAAAAATAGCTGTCATTGCTATTTTTACAGGATTTGCATTGGCTAGCATTGCATTAAGCACTAGAATTGAACCTGGTTTGGCACAGAACA TTGTTCTTCCTCGAAACTCATATCTTCAGGGTTATTTCAATAACGTTTCAGAATATCTCAGGGTTGGACCACCTTTGTATTTTGTAGTGAAGAACTATAA CTACAGCTCTGAATCACTGCATACAAATCAGCTTTGCTCCATTAGCCAATGCAATTCAGACTCTCTTTTAAATGAGATTGCTAGAGCAGCCCTAGTACCA GACACAAGTTATATAGCCAAGCCAGCCGCTTCGTGGCTTGATGATTTTCTTGTGTGGGTATCTCCAGAAGCATTTGGGTGCTGCAGGAAGTTCATGAATG GGAGTTATTGCCCCCCGGATGATCAGCCTCCTTGCTGTGCTGTTGGTGATGGTTCTTGTGTTTCAGATGGAGTATGTAAAGATTGCACAACGTGCTTCCG TCACTCAGATCTTGACAATGACCGTCCGTCTACAACACAGTTTAAGGAGAAATTGCCATGGTTTCTTAGTGCTCTGCCGTCTGCTGATTGTGCAAAAGGT GGTCATGGAGCTTACACAAGCAGTGTTGACCTGAAAGGCTATGAAGGTGGCATAATACAAGCATCATCATTCCGTACATATCATACCCCCCTCAACAAGC AGGTTGACTATGTTAATTCTATGAGGGCTGCTCGAGAGTTTTGTACAAAAGTTTCTGATTCTTTAAAGATTGAGATCTTCCCATATTCTGTGTTTTACAT TTTTTTCGAGCAATACCTAAATATATGGAAGACTGCACTGGTCAACCTTGCTATAGCTATTGGTGCAGTATTTATTGTGTGCTTGGTTATCACCTGCAGT TTATGGAGTTCAGCAATCATTTTATTGGTGTTGGTGATGATTGTCGTTGATCTTATGGGTGTGATGGCCATTCTGGATATCCAGTTGAATGCTGTTTCGG TGGTCAACCTTGTTATGTCAGTGGGGATTGCTGTTGAGTTTTGTGTGCATATGACTCATTCGTTTACTGTAACAAGTGGTGACAAGGATCGACGCATGAA GGAGTCACTGGGTACAATGGGAGCTTCAGTATTCAGTGGTATCACATTAACAAAGCTGGTTGGAGTTATTGTTCTTTGCTTCTCGAGGACAGAAGTTTTT GTGATTTATTACTTTCAAATGTACT BLAST |
Tissue | pods |
Gene name | LI_gene_193639; |
Additional information | details; |
PAB | abscising pods |
PNAB | non-abscising pods |
PS1 | seeds stages 1-3 |
PS2 | seeds stages 4-6 |
PS3 | seeds stages 7-8 |
PW1 | pods wall stages 1-3 |
PW2 | pods wall stages 4-6 |
PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_505786
Blastp | Niemann-Pick C1 protein from Sus with 36.57% of identity |
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Blastx | Niemann-Pick C1 protein from Sus with 39.16% of identity |
Eggnog | Niemann-Pick disease type C1(ENOG410XR54) |
Kegg | Link to kegg annotations (397591) |
CantataDB | Link to cantataDB annotations (CNT0002821) |
Mirbase | - |
Ncbi protein | Link to NCBI protein (XP_019438099.1) |
Pfam | Patched family (PF02460.17) |
Rfam | - |
GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |