| Id Trinity | TRINITY_DN52553_c4_g1_i20 |
|---|---|
| Name Transcript | Ll_transcript_506397 |
| Sequence | ATTTACCAACCCCAGAATTGTATCAAGCAATCAAAACCCGATATTTTGAGATGAAAATGACAACTCGGAGAATTTGATGTTCTGGAAGAAAACGAACGCA GCAGCTTCCTCTTAAACTCGCTTCAGATTCGAAGGATCACCGCCGCCGCCACCGTTGTATCTTACAAGGTGCACCGACAATAACATTGAGGAGGTGGTAA TGGGTGGGAATAAGAAGAGGAAGAGAAAGGAAGAAGTGAAAGTGAAGTGCAAGTATTCAGAAAACTCACCAGATTTTACTCATTTAGCTTCTCTCTACCC TTCATTTCAACCTTTTCTTCATTACTCCTCGCGTCATAATTACCCTACCATCGATTGGACCGATTTTAACGCTACTCGTGAACTAACCCGTGTTTTGCTT CTTCACCACCACTCTCTCAACTGGTGGATTCCTGATGGACAGCTCTGCCCTACTGTGCCCAACAGGTCTAATTACATCTATTGGGTTGCTGATCTTCTCT CATCTGACATCATTCCAAATACCATTTCAAATGGAGGTAAGGTGAGGGGATTTGATATAGGAACAGGAGCAAACTGCATATACCCACTTCTGGGTGCAGC GCTTATGGGATGGAGTTTTGTAGGATCAGATGTGACTGATGTTGCAATAGAGTGGGCAGAGAAAAATGTTAATAGTAATCCACAATTTTCTGAGTTGATT GAAATTAGAAAGGTTGAAAGCAATGAAAGTACTTTCTGTGTGGAAGAGTTGCATTCTGAAAAGCCAGTCCAGAGTAGAACCGAGATAAATTTGTGTGAGA GTATCAATACAGAGGTAGAACCTTTGCCTTCATTACCTCTTGATTCACACATCCTGGAGAATAAGAATTATCGTGGACCTACCATACTTCTTGGCGTAGT AAGGGATGATGAGAAGTTTGACTTTTGCATGTGTAATCCACCTTTTTTTGAAAGTTTGGAGGAAGCAGGACTTAATCCTAAAACTTCTTGTGGAGGCACT TCGAAAGAAATGGTTTGCCCTGGTGGCGAAAAGGCCTTCATTACTCGTATTATTGAAGACAGTACTGAACTGAAGCATCAATTTCGGTGGTTCACTTCAA TGATAGGGAGAAAGACAAATCTCAAGTACCTTACATCAAAACTTTGGGAGGTTGGTGTTACCATAGTTAAGACAACCGAATTTGTCCAAGGCAGGACATC CCGATGGGGCCTTGCTTGGTCTTTCTTGCCTCCTATACAGAAGTCATCAATTTCTTTACCTGAGAAGAAGAGTAACATTTCCTTTCTGGTCGAGGGAAGT AGCAGGGAAGGTTGAAGAACAACTAGCGGCAGCAAGAACTTCAATCAGAACCAATCGGAGTGCCGCAAATGAAGGCGGCGATGAGGGCTATGTTCCTAGC AGAGCTGTGTATTGGAATCCACGCTTATTTTACAGGAGCTACTTGGAGATGAGAAAATATTGAAAGTGTATGTATATCCAGATGGGGATCATCCAATAGC TCATGATGGACCATGCAAAGACATATACTCAATTGAAGGAAGGTTCCTCCATGAAATAGAACATGGTCGTGGCAGGTTTATGACCAATGATCCTAGTCTT GCTCATGTTTACCTTTTGCCTTTCAGTGTAGCTTGGATGGTGAAATATCTGTATACACCACTCTCTTATGACCACTCTCCTTTAAGGCAATTTGTCTTTG ATTATGTTAGAGTCATATCTACTAAGTACCCTTTCTGGAATAGAACTCATGGTGCTGACCACTTCACTTCATGCTTGCTTGTCATGATTGGGTTAGTTCA TTTTCCTTCATTATAGTATTGCTACTTTTACTTTTGTTTCTACACGTTTTCTCTTGATCATGTCAAATACTCATGTCCAATTCATCATAGAGATATTTTT GAGTAAGAACAATTCATGTGTATTAAGTTATATGCATTATGTTAAGAACATATTTTTGCTACTGTTAAAAAGTGTTTTACACCCAAATAAGTGCTTGATT TTAAGTGCTTAGTGTATACAAAAGGATGACATTGTTATATTGACACTTTAGTTGCTTATTAGGATTTTAAGCTTTTAATTTTCTTTTTTTGAAATCCTAG TAAGTAATTTTTGGAGTTAATAAAGATTGAGCGAAGGTCGCCCTGAAGGCCTCTTTCTTCTCAAATCATCTTTGAAAGG BLAST |
| Tissue | pods |
| Gene name | LI_gene_193660; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_506397
| Blastp | U6 small nuclear RNA (adenine-(43)-N(6))-methyltransferase from Dictyostelium with 39.32% of identity |
|---|---|
| Blastx | U6 small nuclear RNA (adenine-(43)-N(6))-methyltransferase from Danio with 35.54% of identity |
| Eggnog | Specifically methylates the adenine in position 1618 of 23S rRNA (By similarity)(COG3129) |
| Kegg | Link to kegg annotations (DDB_G0275203) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019460068.1) |
| Pfam | Protein of unknown function (DUF890) (PF05971.11) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |