Ll_transcript_506380

• Id Trinity: TRINITY_DN52553_c4_g1_i5
• Name Transcript: Ll_transcript_506380
• Sequence: ATTTACCAACCCCAGAATTGTATCAAGCAATCAAAACCCGATATTTTGAGATGAAAATGACAACTCGGAGAATTTGATGTTCTGGAAGAAAACGAACGCA GCAGCTTCCTCTTAAACTCGCTTCAGATTCGAAGGATCACCGCCGCCGCCACCGTTGTATCTTACAAGGTGCACCGACAATAACATTGAGGAGGTGGTAA TGGGTGGGAATAAGAAGAGGAAGAGAAAGGAAGAAGTGAAAGTGAAGTGCAAGTATTCAGAAAACTCACCAGATTTTACTCATTTAGCTTCTCTCTACCC TTCATTTCAACCTTTTCTTCATTACTCCTCGCGTCATAATTACCCTACCATCGATTGGACCGATTTTAACGCTACTCGTGAACTAACCCGTGTTTTGCTT CTTCACCACCACTCTCTCAACTGGTGGATTCCTGATGGACAGCTCTGCCCTACTGTGCCCAACAGGTCTAATTACATCTATTGGGTTGCTGATCTTCTCT CATCTGACATCATTCCAAATACCATTTCAAATGGAGGTAAGGTGAGGGGATTTGATATAGGAACAGGAGCAAACTGCATATACCCACTTCTGGGTGCAGC GCTTATGGGATGGAGTTTTGTAGGATCAGATGTGACTGATGTTGCAATAGAGTGGGCAGAGAAAAATGTTAATAGTAATCCACAATTTTCTGAGTTGATT GAAATTAGAAAGGTTGAAAGCAATGAAAGTACTTTCTGTGTGGAAGAGTTGCATTCTGAAAAGCCAGTCCAGAGTAGAACCGAGATAAATTTGTGTGAGA GTATCAATACAGAGGTAGAACCTTTGCCTTCATTACCTCTTGATTCACACATCCTGGAGAATAAGAATTATCGTGGACCTACCATACTTCTTGGCGTAGT AAGGGATGATGAGAAGTTTGACTTTTGCATGTGTAATCCACCTTTTTTTGAAAGTTTGGAGGAAGCAGGACTTAATCCTAAAACTTCTTGTGGAGGCACT TCGAAAGAAATGGTTTGCCCTGGTGGCGAAAAGGCCTTCATTACTCGTATTATTGAAGACAGTACTGAACTGAAGCATCAATTTCGGTGGTTCACTTCAA TGATAGGGAGAAAGACAAATCTCAAGTACCTTACATCAAAACTTTGGGAGGTTGGTGTTACCATAGTTAAGACAACCGAATTTGTCCAAGGCAGGACATC CCGATGGGGCCTTGCTTGGTCTTTCTTGCCTCCTATACAGAAGTCATCAATTTCTTTACCTGAGAAGAAGAGTAACATTTCCTTTCTGGTCGAGGATCTT CCATCCCAACATGGTGCCTTTAATGTTTTGGAAGCCATCAAGTCTTACTTCTCTTTGTATGGCCTATCATGTACATTGAATCCCTCCTCTTTCACGGTGG ATGTCCTGGCGTCCAAAGATTACTGTGATTCAATCTTGAAGAATGAATTACCGATTATCAATAAATCCATCAATTGTCAACCTTCAGGAGAGACATCTAA TGGATCAAGTTTGAATTCCTCCGCTGATAGATTAGGCCTCCGTATATCGGTTTTTCAGCAAAGCCGTAGGACACTGTTGGTGAAAGGTTCATTACAAGAT AGGAATAGCCCATTATCAGGAGCATTCTCAGTGATATTCCAAAAGCTGGAGGAAGCTTTGCGAAATAAATTTTATACAAAATTGGCCTGATGGTTTAGTT ATTTGACTTATCACTTACAAGTTATAGGACTGAGTGATTGGATGATATGTTGTCGAATGGAGATAAGTTCATGAGTGCTATATAGTCGGGGCCACGGTTT GTAGAATACATAACTGAAATCGCACTTGACGTAGAATGGAAATAGAGCACAACAATCATTTCCAAAGACACTATTGCTCAACAACAATCAAGCCTTAATC TTGAGGCAGTGTTCCTCCTTGTAACATTTTTGGTAGATCATGTATATTTATTTTTGTACCAAACCGCTTAGAACTATTCATTTGGTTTGAAAATTGTCCT AAGTGGGATCTGTATTTAAAAATACCAAACTGTCATTTTGTACATGGTACATGGTATCTGCTTATTTTTTACTCAGTATTTGCATCTATGGTGGCAAAAA TAACATGTCCATTATTATCTCAAAA
• Tissue: pods
• Gene name: LI_gene_193660;
• Additional information: details;

Expression of Ll_transcript_506380

FPKM

• PAB: 1.1
• PNAB: 4.8
• PS1: 5.1
• PS2: 4.8
• PS3: 4.6
• PW1: 3.4
• PW2: 3.9
• PW3: 4.6

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_506380

• Blastp: U6 small nuclear RNA (adenine-(43)-N(6))-methyltransferase from Dictyostelium with 39.32% of identity
• Blastx: U6 small nuclear RNA (adenine-(43)-N(6))-methyltransferase from Danio with 34.37% of identity
• Eggnog: Specifically methylates the adenine in position 1618 of 23S rRNA (By similarity)(COG3129)
• Kegg: Link to kegg annotations (DDB_G0275203)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019460068.1)
• Pfam: Protein of unknown function (DUF890) (PF05971.11)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;