Ll_transcript_507792

• Id Trinity: TRINITY_DN52561_c1_g1_i13
• Name Transcript: Ll_transcript_507792
• Sequence: GCTCGTGGTCAGAGTATTGTTGCTGCGAATGAGCTCAAACGGATTCGTGGGGTGCCGCTTATTGTTTTGGAGGAGGCCCTGAAAAGGAAAAAAAATGGCT ATGCAGGAATGTTGGAGGGATTCCACCAGGAGCAATGGACTTAGAAAAAGATCCACCACTTTGGTGGCTATGAATCTTGAAAATTTGGTATAAGTCTTTA AGATTGAATGGCTTAGACTCTTTGTCACTCAAGATGTTACTACAACAGCAATTGATAATTTCTCCATCTCTTGAGCATTTGTAAGTTTTCCCTTTATGTC TACCTATGGTTCTGAATATATTACAACAAAAGATTCTTGTGATTCTGCTTCTTCGTCAGTGATAACTAGATAACCAGAAAATGGTGCATCTGGTGGAGGA ACTTCAAGTGTACTAGGACTTCTCCTGGGATCTACCTCACTGGAAGACAAGGCAAGGGAAATAACAATTGTTTATGGCCCTTGTGAAAACAATAGAGATT ATCTTTTCCTGCTTGAAAAGACCTTGCATGACATTGAATTAAAAGTGGCACTTTTAAGGATGGAGATTTGCTTGTTAACAGGGATGGCGTCCAAAATTTA TAATTTATTTGTTGCCAATAATATGTTTTGGGATAACAAATTCATGAATGTTGTGATATTGCATTTCTTATATCTGGTCTTTATTGCATTTCTTATAAAC TAATTGAAATTGTTAGTTGTTGATTGTTTTCATACACACTATTTTTTGCAGGCTGAATCTCTTGTGAAGTCTCAGCAAGACATGGGTGAGCTTGGGCTGG CCTTTGTAAAACTGACTAAATTTGAGACAGAAGAAGCCATATTTGAAGCTCAGAGAATAAGAGCAACTGACACAAGGAATGTGGCAACGGCAGCTGTTAA AGCAAGCAGGTTATATAGAGAGCTGAATACACAAACAATCAAACATTTGGATAAACTACATGACTACCTTGGGACAATGCTAGCCGTCAACAATGCATTT GCTGACCGATCAAGTGCATTATTGACGGTTCAAACACTCTCATCAGAGCTAGTTTCTTTAAATTCACGGATTGAGAAACTTGAAGTTGCCTCATCCAAAG TATTTGGCGGGGACAAGTCTAGGATGCGGAAAATTGAAGAGTTGAAAGAAGCCCATAGAGTTACCGAGAATGCTAAAACATGTGCAGACAGAGAGTATGA ACGAATCAAGGAAAATAATAGGAGCGAACTTGAAAGAATCGACAAAGAGAGGCATGATGACTTCTTTAGCATGTTGCGAGGATTTGTTGTCAATCAAGCA GGCTATGCAGAGAAGATGGCAGCTGTGTGGGAGAAGCTTGCAGAAGAAACGACTACATACTCAATAGACAGTAGCTAAAGTTTATGTTATTGTAAATTTT TGTTTTTGCCCTCTTTATGCTACCTTCTAGATTTTTGTTTCTTGATTTATAAACACTTAATTTGCAAAGACAGTAGCTTATGTAGTTTAGAAATACTTTT ACATTTAGCTAACTTAATTTTAACTAAACATATTTGGATCTAAGCACTGGATCCCAGCACTGGATCCTGGGATCCCATTGCTGAGATGGGATTCACTATC CCATCCCAGATTGGAATCTCAGCTATACTAGTTGCAAATCCCATGATTCTGTCCCAGTTTCCCAGCGAGATCTCACCGTGAAAGGGATGACGGGTTAAAA CCCCATTTTGCCCACATTTTTAAGTCACCATGTCCTGATCTTTTGGTCATTTGGACAAGCTTGTTGCTTGTTATGTATTTAATTGTGTAATTTTCTATTT TTAGCATTTATGTGTAGGTTATAAATTGCTCATTTTGCTTGCTTAGATATTCCTATGCCAGTCATCCCACTATTCACTCCCGTTTTTTTTTGGGATTGAC TTCATAGAATTGGATACGCATATCCTTTATTTTGCTGTTTTGTTTTGGTCTTCCATTCGAGCTATACTTGAGTCATCTGTCTGTTTTGGTCTTCCATTCG AGCTTTATTTCGAGTCATTTGTCTACTCTGGTTCCAAATTAGTTCTGAAAGTCTACAATGGCTCTCTCTTCGGCTTTCCTATAGATGTATTTGGTGATAA TGTGAATTGTCAAGAGACTAAAATTTATACTACGTAGACTTTTATGAAGGGGTATTTGTTGATCGTTTTATTTAGATGATTAACTTGACGGTCATTATGT CCTTGAAGAC
• Tissue: pods
• Gene name: LI_gene_193722;
• Additional information: details;

Expression of Ll_transcript_507792

FPKM

• PAB: 4.5
• PNAB: 6.4
• PS1: 6.5
• PS2: 6.3
• PS3: 7.5
• PW1: 7.4
• PW2: 7.6
• PW3: 9

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_507792

• Blastp: Sorting nexin 2A from Arabidopsis with 73.06% of identity
• Blastx: Sorting nexin 2A from Arabidopsis with 72.6% of identity
• Eggnog: sorting nexin(COG5391)
• Kegg: Link to kegg annotations (AT5G58440)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019456646.1)
• Pfam: Vps5 C terminal like (PF09325.9)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;