Ll_transcript_507800

• Id Trinity: TRINITY_DN52561_c1_g1_i19
• Name Transcript: Ll_transcript_507800
• Sequence: GCTCGTGGTCAGAGTATTGTTGCTGCGAATGAGCTCAAACGGATTCGTGGGGTGCCGCTTATTGTTTTGGAGGAGGCCCTGAAAAGGAAAAAAAATGGCT ATGCAGGAATGTTGGAGGGATTCCACCAGGAGCAATGGACTTAGAAAAAGATCCACCACTTTGGTGGCTATGAATCTTGAAAATTTGGTATAAGTCTTTA AGATTGAATGGCTTAGACTCTTTGTCACTCAAGATGTTACTACAACAGCAATTGATAATTTCTCCATCTCTTGAGCATTTGTAAGTTTTCCCTTTATGTC TACCTATGGTTCTGAATATATTACAACAAAAGATTCTTGTGATTCTGCTTCTTCGTCAGTGATAACTAGATAACCAGAAAATGGTGCATCTGGTGGAGGA ACTTCAAGTGTACTAGGACTTCTCCTGGGATCTACCTCACTGGAAGACAAGGCAAGGGAAATAACAATTGTTTATGGCCCTTGTGAAAACAATAGAGATT ATCTTTTCCTGCTTGAAAAGACCTTGCATGACATTGGTAAGCTTTCTATCTGTACCATTACAGTTACAAATTATGATTCTCTCTTAAAAAATATTAAGTT GCTGACACTACATACATTATTTTGTCATAAACTAATTGAAATTGTTGGTATGTTGTGTTGTAGAATTAAAAGTGGCACTTTTAAGGATGGAGATTTGCTT GTTAACAGGGATGGCGTCCAAAATTTATAATTTATTTGTTGCCAATAATATGTTTTGGGATAACAAATTCATGAATGTTGTGATATTGCATTTCTTATAT CTGGTCTTTATTGCATTTCTTATAAACTAATTGAAATTGTTAGTTGTTGATTGTTTTCATACACACTATTTTTTGCAGGCTGAATCTCTTGTGAAGTCTC AGCAAGACATGGGTGAGCTTGGGCTGGCCTTTGTAAAACTGACTAAATTTGAGACAGAAGAAGCCATATTTGAAGCTCAGAGAATAAGAGCAACTGACAC AAGGAATGTGGCAACGGCAGCTGTTAAAGCAAGCAGGTTATATAGAGAGCTGAATACACAAACAATCAAACATTTGGATAAACTACATGACTACCTTGGG ACAATGCTAGCCGTCAACAATGCATTTGCTGACCGATCAAGTGCATTATTGACGGTTCAAACACTCTCATCAGAGCTAGTTTCTTTAAATTCACGGATTG AGAAACTTGAAGTTGCCTCATCCAAAGTATTTGGCGGGGACAAGTCTAGGATGCGGAAAATTGAAGAGTTGAAAGAAGCCCATAGAGTTACCGAGAATGC TAAAACATGTGCAGACAGAGAGTATGAACGAATCAAGGAAAATAATAGGAGCGAACTTGAAAGAATCGACAAAGAGAGGCATGATGACTTCTTTAGCATG TTGCGAGGATTTGTTGTCAATCAAGCAGGCTATGCAGAGAAGATGGCAGCTGTGTGGGAGAAGCTTGCAGAAGAAACGACTACATACTCAATAGACAGTA GCTAAAGTTTATGTTATTGTAAATTTTTGTTTTTGCCCTCTTTATGCTACCTTCTAGATTTTTGTTTCTTGATTTATAAACACTTAATTTGCAAAGACAG TAGCTTATGTAGTTTAGAAATACTTTTACATTTAGCTAACTTAATTTTAACTAAACATATTTGGATCTAAGCACTGGATCCCAGCACTGGATCCTGGGAT CCCATTGCTGAGATGGGATTCACTATCCCATCCCAGATTGGAATCTCAGCTATACTAGTTGCAAATCCCATGATTCTGTCCCAGTTTCCCAGCGAGATCT CACCGTGAAAGGGATGACGGGTTAAAACCCCATTTTGCCCACATTTTTAAGTCACCATGTCCTGATCTTTTGGTCATTTGGACAAGCTTGTTGCTTGTTA TGTATTTAATTGTGTAATTTTCTATTTTTAGCATTTATGTGTAGGTTATAAATTGCTCATTTTGCTTGCTTAGATATTCCTATGCCAGTCATCCCACTAT TCACTCCCGTTTTTTTTTGGGATTGACTTCATAGAATTGGATACGCATATCCTTTATTTTGCTGTTTTGTTTTGGTCTTCCATTCGAGCTATACTTGAGT CATCTGTCTGTTTTGGTCTTCCATTCGAGCTTTATTTCGAGTCATTTGTCTACTCTGGTTCCAAATTAGTTCTGAAAGTCTACAATGGCTCTCTCTTCGG CTTTCCTATAGATGTATTTGGTGATAATGTGAATTGTCAAGAGACTAAAATTTATACTACGTAGACTTTTATGAAGGGGTATTTGTTGATCGTTTTATTT AGATGATTAACTTGACGGTCATTATGTCCTTGAAGAC
• Tissue: pods
• Gene name: LI_gene_193722;
• Additional information: details;

Expression of Ll_transcript_507800

FPKM

• PAB: 0.7
• PNAB: 0.6
• PS1: 1
• PS2: 1
• PS3: 1.4
• PW1: 0.3
• PW2: 0.8
• PW3: 0.8

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_507800

• Blastp: Sorting nexin 2A from Arabidopsis with 73.06% of identity
• Blastx: Sorting nexin 2A from Arabidopsis with 72.6% of identity
• Eggnog: sorting nexin(COG5391)
• Kegg: Link to kegg annotations (AT5G58440)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019456646.1)
• Pfam: Vps5 C terminal like (PF09325.9)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;