| Id Trinity | TRINITY_DN52561_c1_g1_i22 |
|---|---|
| Name Transcript | Ll_transcript_507803 |
| Sequence | GCTCGTGGTCAGAGTATTGTTGCTGCGAATGAGCTCAAACGGATTCGTGGGGTGCCGCTTATTGTTTTGGAGGAGGCCCTGAAAAGGAAAAAAAATGGCT ATGCAGGAATGTTGGAGGGATTCCACCAGGAGCAATGGACTTAGAAAAAGATCCACCACTTTGGTGGCTATGAATCTTGAAAATTTGGTATAAGTCTTTA AGATTGAATGGCTTAGACTCTTTGTCACTCAAGATGTTACTACAACAGCAATTGATAATGTCTCCATCTCTTGAGCATTTTGATAACTAGATAACCAGAA AATGGTGCATCTGGTGGAGGAACTTCAAGTGTACTAGGACTTCTCCTGGGATCTACCTCACTGGAAGACAAGGCAAGGGAAATAACAATTGTTTATGGCC CTTGTGAAAACAATAGAGATTATCTTTTCCTGCTTGAAAAGACCTTGCATGACATTGAATTAAAAGTGGCACTTTTAAGGATGGAGATTTGCTTGTTAAC AGGGATGGCGTCCAAAATTTATAATTTATTTGTTGCCAATAATATGTTTTGGGATAACAAATTCATGAATGTTGTGATATTGCATTTCTTATATCTGGTC TTTATTGCATTTCTTATAAACTAATTGAAATTGTTAGTTGTTGATTGTTTTCATACACACTATTTTTTGCAGGCTGAATCTCTTGTGAAGTCTCAGCAAG ACATGGGTGAGCTTGGGCTGGCCTTTGTAAAACTGACTAAATTTGAGACAGAAGAAGCCATATTTGAAGCTCAGAGAATAAGAGCAACTGACACAAGGAA TGTGGCAACGGCAGCTGTTAAAGCAAGCAGGTTATATAGAGAGCTGAATACACAAACAATCAAACATTTGGATAAACTACATGACTACCTTGGGACAATG CTAGCCGTCAACAATGCATTTGCTGACCGATCAAGTGCATTATTGACGGTTCAAACACTCTCATCAGAGCTAGTTTCTTTAAATTCACGGATTGAGAAAC TTGAAGTTGCCTCATCCAAAGTATTTGGCGGGGACAAGTCTAGGATGCGGAAAATTGAAGAGTTGAAAGAAGCCCATAGAGTTACCGAGAATGCTAAAAC ATGTGCAGACAGAGAGTATGAACGAATCAAGGAAAATAATAGGAGCGAACTTGAAAGAATCGACAAAGAGAGGCATGATGACTTCTTTAGCATGTTGCGA GGATTTGTTGTCAATCAAGCAGGCTATGCAGAGAAGATGGCAGCTGTGTGGGAGAAGCTTGCAGAAGAAACGACTACATACTCAATAGACAGTAGCTAAA GTTTATGTTATTGTAAATTTTTGTTTTTGCCCTCTTTATGCTACCTTCTAGATTTTTGTTTCTTGATTTATAAACACTTAATTTGCAAAGACAGTAGCTT ATGTAGTTTAGAAATACTTTTACATTTAGCTAACTTAATTTTAACTAAACATATTTGGATCTAAGCACTGGATCCCAGCACTGGATCCTGGGATCCCATT GCTGAGATGGGATTCACTATCCCATCCCAGATTGGAATCTCAGCTATACTAGTTGCAAATCCCATGATTCTGTCCCAGTTTCCCAGCGAGATCTCACCGT GAAAGGGATGACGGGTTAAAACCCCATTTTGCCCACATTTTTAAGTCACCATGTCCTGATCTTTTGGTCATTTGGACAAGCTTGTTGCTTGTTATGTATT TAATTGTGTAATTTTCTATTTTTAGCATTTATGTGTAGGTTATAAATTGCTCATTTTGCTTGCTTAGATATTCCTATGCCAGTCATCCCACTATTCACTC CCGTTTTTTTTTGGGATTGACTTCATAGAATTGGATACGCATATCCTTTATTTTGCTGTTTTGTTTTGGTCTTCCATTCGAGCTATACTTGAGTCATCTG TCTGTTTTGGTCTTCCATTCGAGCTTTATTTCGAGTCATTTGTCTACTCTGGTTCCAAATTAGTTCTGAAAGTCTACAATGGCTCTCTCTTCGGCTTTCC TATAGATGTATTTGGTGATAATGTGAATTGTCAAGAGACTAAAATTTATACTACGTAGACTTTTATGAAGGGGTATTTGTTGATCGTTTTATTTAGATGA TTAACTTGACGGTCATTATGTCCTTGAAGAC BLAST |
| Tissue | pods |
| Gene name | LI_gene_193722; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_507803
| Blastp | Sorting nexin 2A from Arabidopsis with 73.06% of identity |
|---|---|
| Blastx | Sorting nexin 2A from Arabidopsis with 72.6% of identity |
| Eggnog | sorting nexin(COG5391) |
| Kegg | Link to kegg annotations (AT5G58440) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019456646.1) |
| Pfam | Vps5 C terminal like (PF09325.9) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |