Ll_transcript_505521

• Id Trinity: TRINITY_DN52562_c2_g2_i2
• Name Transcript: Ll_transcript_505521
• Sequence: AACCCCAACTGAAGTTCATAGTAAAGAAGAAAAGCATACATTGATTAGCTATTTGGAATTCTCAAGAGTAGGAGGGTACGGTGATCTTCCAGATGTTAGA GCCTTGTGGTTTTTTTTTTCTGCTTCTCTAGGGGAATCAAGAAAGCATAGGAGGAGAGCCAACTGATGCACTGTCTTCTTGGTTTTGTAACTCTTCTGTT ACAATCCTCATAAACCAGACCTTATTGCATCAGTTACTCTAAAAATAAAAACCATGTTGCTCTACAAATGGGGACCATAACCCATAAAAGTAACCGTAGC GGTTACTACTTAAGTTGCAATAATTATAATTCAGTCCCGTCATCAAATTAGAAATTGCCTGAAGGTATCTATACTTATAATATTTCATGACATATATGCC CTTAGCCACCAATTAATTCCTGAAGACCATTTTATATTTTGGCTAATTAAATAATGGCCATAACACAATTATAGTATTATATTTGTGACCCATAAAATGT CAGAAATTCCAACAATCTCCCACTGGTCACATATATAATTCACCGTACGTGTTATCCTTATTGCGCGCTTAAATATTGTCATCACGACTCAGGCATACCC AAATTATCTCGTTCATTAGTCTTGTCTCCATATCGAATCATAGTGAATTTCGCCATATCAATCATGACTAATTCAACAATGATCACCAACATTGACACAA CTAAATAACATAGATTCATCATGAAACGTGTAGCATGAAAATCACATGAATATAGTCTATACATGTTAATTTTCAACTGGTTCTACTTAACTTTAGTGAG ATCCTTAATAATAACATAAAACCTTATTGTACAAAGTATAAAGACAGAATACCAAACTGAATGATTAATCAACTGAAGTTTGAATACAAAGTATCCATAC ATAATACTGAAATTACATAGAACATAATAAAGGTGTACACATTCTAACTCCCACTAAACTAAAAAATCCTCACATTGTAAAACACCCATGTGAGCAATAT GCTCATTAAAGACCTTGGGTGTGATAGCTTTTGTAAGAGGATCCGCAATCATGGAGTTAGTGCCTAAGTGTTTTATGGAAAGTTGTTCACTTTGTACTTT CTCTTTAACTAGGAACTTAATGTCGATGTGTTTCGACTTTGCTGAACTCCTATTGTTGTTGGAGAACAACACGGCTGACCTATTGTCACAATATAACTTT AGTGGTTTTTCAATTCCTTCCACAATTCGCAGCCCAATGACAAAATTTCTCAGCCATGTTGCCTGATGTGATGCCTCATAACATGCTATATATTCAGCTG TCATGGTGGATGAAGTCACAAGAGTTTACTTGGTACTACGCCAAGAAACTACACCACCAGCCAACAAATATACATAACCCGAAGTAGATCGTCTACTATC TTGACATCCCGCAAAATCGGAGTCAGAATACCCGATGATCTCTAATTGGTCTGATCTCCTATATGTGAGCATATAATCTTTTGTTCCCTTTAAGTACCTC ATGACCATTTTGGCTGTTTTCCAATGATCCATTCCTGGATTACTCATATATCTGCCTAAAACCCCAACTATGAACGCTATATCCGGACGCGTACATACTT GAGCATACATATGACTCCCTATAGTTGATGCATAAGTGATCTTTTGCATTTCTTGAATTTCCAGATTTCCTTTAGGGCACTGATTGAGACTAAATTTGTC TCCCTTAGCAACTGGAGTATCCATTGGTTTACAATCCTGCATGCCATATCTTTTAAGTACCTTTTCTATATAGCTCTTTTGTGATAATCCAAGAATACCC CGAGATTTGTCTCGGTGTATCTGAATTCCTAATACAAATGTAGCTTCACCAAGATCTTTCATTTCAAAATTACTAGATAGAAATTTCTTGGTTTCTAACA AGGTACCCACATCATTAGTGGTAAGCAGTATGTCATCCACATACAAGAGCAAGAAAATATACTTGCTCCCACTGAACTTGTGATACACACAATCCTCGAC TGAATTCATCTCAAAACCATAAGAGAGAATCACCTCATGAAATTTGTGGTACCACTGACGAGACGCCTGCATTAGCCCATAAATGGATTTTGTCAATTTG CAAACCATATTCTTTTGGTCTCCCATTATAAAGTTTTCTGGTTGCACCATATAAATCTTTTCATCAATGTTTCCATTGAGTAAAGTTGTCTTGACATCCA TCTGATGAAGCTCCAAATCATAATGTGCTACAAGAGCCATGATTGTCCTGAGAGAGTCTTTCGATGAAACTAGAGAGAAAGTCTCTTTATAGTCAATCCT TTCCTTCTGAGTAAAACCCTTAGCTACAAGATGAGCCTTATACCTCTCCACATTACCATTAGAATCCTGCTTGGTCTTAAAAATCCATTTGCAACCAATG GGTTTCTTACCTTCTGGTAATGGGACAAGTTCCCAAACTTTATTGTCTTGCATGGATTTATACTCCTCTTTCATTGCTTCAATCCACTTTTCCGAATTGG AACTTTGGATGGCTTCACGAACGTTTAATGAATCATTATCCATTAAGCCATCACCCTCATGTTCCAGGAGATAGCAAATGTAGTCATCTGAAATTGCATT TCTCCTTTCTGTAGTGGATCTACGCAAAGCTATTGGCTCTAGCAACTCTTGTCCATGTTCTTGAGGGTTTTGAGTTTGTTCTTGAGGGTTTTGAGGAGAT ACCATATGAATCGCATCTGGAATTGATGTTGATTCTTCCTCTAAGACAAAGTTTCTAACTTTATTCATTTTCCCTTCAAACTCAATATCCTCAAAGAACG TGACTATACCCGTCTCAAATATGGATTTTAAATTTGGGTCATAAAATTTATAGCCCCTTGGTTTTTCAGAGTAACCGATAAAGTAGCTGCTCACTGTACG GGAGTCCAATTTCTTTTCATGAGGCCTACGAGGCCTTGCCTCAGCTGGACATCCCCACACATGAAAATGCTTTAGACTAGGCTTTCGCCCAGTCCAATGC TCATAAGGTGTTTTGGCAGTTGCCTTAGTTAGCACCCTATTAAGAATATAAGCTGCAGTCTTAAGTGCCTCTCCCCAGAGTGACTTTGATAAGGTAGAGT GACAAATCATACTCCTCACCATATCCTTAAGTATCCGGTTTCTTCTTTCAGACACACCATTCATGTTAGGCGATCCTGACATGGTGTACTGTGGGACTAT ATCACATTCCTCTAGGTATTTGGCAAAAGGCCCTGGACGTTGTTCACCTGAACCGTCATATCTACCGTAGTATTCACCACCACGGTCAGATCTGACGTAC TTAATCCTTTTGCTGAGTTCATTTTCAACTTCAGCCTTAAAAGTTTTGAACACGTCCAATGATTGGGACTTTTAATGGATAAGAAAAATGTATGCATAAC GAGAATAATCGTCTATGAATGATATGAAGTATTGTTGACCATTCCAGGAAGCCGTAGGGAATGGCCCACAAATATCCGTATGTATCAATTCTAAGACGTC TGAAGCTCTATATGCACCAGATTTCGATTGTTTGGTCTGTTTTCCTTTTGTGCATTTAACACAAACACTAAGGTTTGTGAAGTCAACGGGATGCAAAATC CCATCTGACACAAGACGCTCAATTCTCTTTTGAGAAATGTGACCTAGGCGCTTGTGCCATAATGCACCTGAATTATTATTTTCAATTTTACGCTTAGTAC CACGTGATTCCACATTTAGAATTTCGCTATAATCAGCTATAGTATTCAACATATAAAGATTGTCATTTAACATGAATGAACAAGTTTCAACAACATTTGA AAATAAAGACAATTGAACCGAATTGTTTTCAAATAAACAATAATAACCAAATTTGTCCAAATAAGAAACAGAAATTAAATTTCGTCTAAAAGACGGTACA ACAAAAGCGTCTTTCAAATCCAAATAAAAAACAGTACATAATAGCAATCTAAAATGCCCTATAGCTTCCACTGCTACCGATTTTCCATCGCCAACGTAGA TGTATCTTTCAACATAATTAGGCTTTCGGTAGCTCAAGCAACCTTGCATTGAAACACTGATGTTAGAAGTTGAACCAGAGTCTAACCACCATGTGTTTCT AGGTACTGAAGTTAAATTGATCTCATAACAGAGCAAAGTAAGAAATGTACATTTCTTAGCACGTCAAGTGTGATACTTTACACATTTCTTCTTTATATGT TCAGACTCTTTGCAAAAGAAACAGACATCAACCTGTTTCTGCTTCTTTTGCACTGGACCCTTAGCAGCTTTATTCTTGGGCTCCATAGTTGTTTTCCTTT TGCCCTGTCTTTAGAGGTATTTATATAATGGGCATTTTCCGTCCTTTCTCGCTTCAATCTTTCCTCTTCTTGCACACAAAACGAAATGAGCTCATTTAGA GTCCATTTCTCCCTTTGACAGATATAAGAGATCTTAAACTGACTGAATTGTGCAGGAAGGGGAAATCAAGACCAAATGTATGAGTAAGTCTTCCGACATC TCAAGCTTAAGGGCCTTAAGTTTTGAAGCAATATTGGACATTCCCATAATGTATTCCCTTATGTTTCCCTTGCCTTGATACCTCATGGAAATCAAGCTCT GTAACAGAGTACTTGTTTCCGCCTTATCGCTATTTGCAAAGCGTTTTTCAATCTCAGCAAGGAAAGCTTTGGTATTGTTTATCTCATCCGAGATAGTACG CCTGGAGACCTCTGGAATGTCGCGCTTAATAATCATTAGACTCATACGATTAGAGCGATCTCACTTCTCATAATCATTCCTCTCTTCAGAGGAACTGAAT TTCGAAGGAAGGGTTGCTCTACCCTTGATGCATAGTCTAGATCGATGTAGCCAATAACAATTTCCATGTTATCTTTCCAGTCCTTAGAATTTGTTCCATT AAGGATCGAAACCGAATTTAGATTTGCAGATATAGAAGCAATTGATGTAGCTGAATAGAACAAAAGACAAAATATTAAAAATATGCTCACAACTTAAAAT TATCAATATGCATAAATAATGGTACGTCCAAATCAAGATACCTAGTTCACCATTAATATCAAGTCTTTGGAAAGTAACATTAACTGCAAGTGGTACTCTT GTTGTAATGATCAATCATTTATAATAAGACATGTCAACTGACGAATCCCTCTTTGGATTGATTCATCAGTCACATGTACAATACTTTTGAATTATAACAT GTTTATCAATACAGGTGTGAATGATCTTCGGCCAAATATCAACTTTCCTTTGGGTTAATTAATACTCGCATGAATAATCATATACACTAACATCTAATAT TCCTCATGGGTTATATCCATGAGAGAGGTCACTTTTGGCGACATTTCACTTGAATTGGTTCACTTGAAATAATAAACAACTTAATGGATAACCAAATCAT AACCAAAGTTAATGGACAAAGATACCAAAACACCAAAAATTCGTAAATTTCCCTTAAAAAATTTACTTGGGCGATCGTACTTTCCCTTGAGCGACCGTAC TCTCGCCAGGGCGAGCCTAATGTCGCCTGTACTCTCGCTTGGGCGAGCGTACTCTCGCTTGAGCGAGAGCTGAGCGTCCAGGTTTCTACCTAATTCTCGC TTGAGCGAGAGCTCAGCGTCTTCAACACGATTTTGACAAAAAAAATGGCACTTTGTAGTCAGTTCTTTTCGAAAAACACCAAAATCATCAGAAAATCATA GATACATTTTCAAAACTATCTAATTTCACATGAAAACGATGAATTTCTATCCTACTCAATCCATGGTATAGATAAATCATCAAACCCAAAACTCAATTTA TTCAAATTTGGGAAAGAAAAAGAAAATCTTCAGAAGACCTAATTTCACATATGAATCAAATTAGGGTGGCTCTGATACCAATTGTAGGAGTTCTCTGTTT AATCCTTTCATC
• Tissue: pods
• Gene name: LI_gene_193726;
• Additional information: -

Expression of Ll_transcript_505521

FPKM

• PAB: 0
• PNAB: 0.1
• PS1: 0.1
• PS2: 0
• PS3: 0.2
• PW1: 0.1
• PW2: 0.2
• PW3: 0.4

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_505521

• Blastp: Retrovirus-related Pol polyprotein from transposon TNT 1-94 from Nicotiana with 40.31% of identity
• Blastx: Retrovirus-related Pol polyprotein from transposon TNT 1-94 from Nicotiana with 36.33% of identity
• Eggnog: -
• Kegg: -
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_020987654.1)
• Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) (PF07727.13)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;