Ll_transcript_505533

• Id Trinity: TRINITY_DN52562_c2_g2_i8
• Name Transcript: Ll_transcript_505533
• Sequence: AACCCCAACTGAAGTTCATAGTAAAGAAGAAAAGCATACATTGATTAGCTATTTGGAATTCTCAAGAGTAGGAGGGTACGGTGATCTTCCAGATGTTAGA GCCTTGTGGTTTTTTTTTTCTGCTTCTCTAGGGGAATCAAGAAAGCATAGGAGGAGAGCCAACTGATGCACTGTCTTCTTGGTTTTGTAACTCTTCTGTT ACAATCCTCATAAACCAGACCTTATTGCATCAGTTACTCTAAAAATAAAAACCATGTTGCTCTACAAATGGGGACCATAACCCATAAAAGTAACCGTAGC GGTTACTACTTAAGTTGCAATAATTATAATTCAGTCCCGTCATCAAATTAGAAATTGCCTGAAGGTATCTATACTTATAATATTTCATGACATATATGCC CTTAGCCACCAATTAATTCCTGAAGACCATTTTATATTTTGGCTAATTAAATAATGGCCATAACACAATTATAGTATTATATTTGTGACCCATAAAATGT CAGAAATTCCAACAATCTCCCACTGGTCACATATATAATTCACCGTACGTGTTATCCTTATTGCGCGCTTAAATATTGTCATCACGACTCAGGCATACCC AAATTATCTCGTTCATTAGTCTTGTCTCCATATCGAATCATAGTGAATTTCGCCATATCAATCATGACTAATTCAACAATGATCACCAACATTGACACAA CTAAATAACATAGATTCATCATGAAACGTGTAGCATGAAAATCACATGAATATAGTCTATACATGTTAATTTTCAACTGGTTCTACTTAACTTTAGTGAG ATCCTTAATAATAACATAAAACCTTATTGTACAAAGTATAAAGACAGAATACCAAACTGAATGATTAATCAACTGAAGTTTGAATACAAAGTATCCATAC ATAATACTGAAATTACATAGAACATAATAAAGGTGTACACATTCTAACTCCCACTAAACTAAAAAATCCTCACATTGTAAAACACCCATGTGAGCAATAT GCTCATTAAAGACCTTGGGTGTGATAGCTTTTGTAAGAGGATCCGCAATCATGGAGTTAGTGCCTAAGTGTTTTATGGAAAGTTGTTCACTTTGTACTTT CTCTTTAACTAGGAACTTAATGTCGATGTGTTTCGACTTTGCTGAACTCCTATTGTTGTTGGAGAACAACACGGCTGACCTATTGTCACAATATAACTTT AGTGGTTTTTCAATTCCTTCCACAATTCGCAGCCCAATGACAAAATTTCTCAGCCATGTTGCCTGATGTGATGCCTCATAACATGCTATATATTCAGCTG TCATGGTGGATGAAGTCACAAGAGTTTACTTGGTACTACGCCAAGAAACTACACCACCAGCCAACAAATATACATAACCCGAAGTAGATCGTCTACTATC TTGACATCCCGCAAAATCGGAGTCAGAATACCCGATGATCTCTAATTGGTCTGATCTCCTATATGTGAGCATATAATCTTTTGTTCCCTTTAAGTACCTC ATGACCATTTTGGCTGTTTTCCAATGATCCATTCCTGGATTACTCATATATCTGCCTAAAACCCCAACTATGAACGCTATATCCGGACGCGTACATACTT GAGCATACATATGACTCCCTATAGTTGATGCATAAGTGATCTTTTGCATTTCTTGAATTTCCAGATTTCCTTTAGGGCACTGATTGAGACTAAATTTGTC TCCCTTAGCAACTGGAGTATCCATTGGTTTACAATCCTGCATGCCATATCTTTTAAGTACCTTTTCTATATAGCTCTTTTGTGATAATCCAAGAATACCC CGAGATTTGTCTCGGTGTATCTGAATTCCTAATACAAATGTAGCTTCACCAAGATCTTTCATTTCAAAATTACTAGATAGAAATTTCTTGGTTTCTAACA AGGTACCCACATCATTAGTGGTAAGCAGTATGTCATCCACATACAAGAGCAAGAAAATATACTTGCTCCCACTGAACTTGTGATACACACAATCCTCGAC TGAATTCATCTCAAAACCATAAGAGAGAATCACCTCATGAAATTTGTGGTACCACTGACGAGACGCCTGCATTAGCCCATAAATGGATTTTGTCAATTTG CAAACCATATTCTTTTGGTCTCCCATTATAAAGTTTTCTGGTTGCACCATATAAATCTTTTCATCAATGTTTCCATTGAGTAAAGTTGTCTTGACATCCA TCTGATGAAGCTCCAAATCATAATGTGCTACAAGAGCCATGATTGTCCTGAGAGAGTCTTTCGATGAAACTAGAGAGAAAGTCTCTTTATAGTCAATCCT TTCCTTCTGAGTAAAACCCTTAGCTACAAGATGAGCCTTATACCTCTCCACATTACCATTAGAATCCTGCTTGGTCTTAAAAATCCATTTGCAACCAATG GGTTTCTTACCTTCTGGTAATGGGACAAGTTCCCAAACTTTATTGTCTTGCATGGATTTATACTCCTCTTTCATTGCTTCAATCCACTTTTCCGAATTGG AACTTTGGATGGCTTCACGAACGTTTAATGAATCATTATCCATTAAGCCATCACCCTCATGTTCCAGGAGATAGCAAATGTAGTCATCTGGAATTGCATT TCTCCTTTCTCAAGTGGATCTACGCAAAGCTATTGGCTCTTGCAACTCTTGTTCATGTTCTTGAGGGTTTTAAGTTTGTCCTTCATGAATTACCAACTCA TCTTGAGCAGAGAAAACATCATCATCTTGAAGAGGTTCCAAATTTGCTTCATAAAAAGCAACCATATGAATCGCATCTGGAATAGATACCAATTCTTCCT CTAAGACAAAGTTTCTATCCTTGTTTTCCCCTTCAAACTCAAAGAAAGAACGTGGTTGTACCCGTCTCAAATATGGATTTTAAATTTGGGTCATAAAATT TATACTCCTTGATTTTTCAGAGTAACCAATAAAGTAGTTGTTGTACGGGAGTCCAATTTCTTTTCATGAGGCCTATATGGCCTTGCCTCAACTGGACATC CCCACACATGAAAATGCTTTAGACTAGACTTTCGCCCAGTCCAATGCTCATAAGGTGTTTTGGCA
• Tissue: pods
• Gene name: LI_gene_193726;
• Additional information: details;

Expression of Ll_transcript_505533

FPKM

• PAB: 0
• PNAB: 0.1
• PS1: 0
• PS2: 0.1
• PS3: 0.1
• PW1: 0
• PW2: 0.2
• PW3: 0.3

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_505533

• Blastp: Retrovirus-related Pol polyprotein from transposon TNT 1-94 from Nicotiana with 46.4% of identity
• Blastx: Retrovirus-related Pol polyprotein from transposon TNT 1-94 from Nicotiana with 43.88% of identity
• Eggnog: -
• Kegg: -
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_020997393.1)
• Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) (PF07727.13)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;