| Id Trinity | TRINITY_DN52580_c3_g1_i14 |
|---|---|
| Name Transcript | Ll_transcript_505954 |
| Sequence | TTGCAGTAACACAACCGTTACCTCAATCGCGACAGCAACCGCAATTTAAAACACTGCATTATTTGCTTAATTTGTTGTTTTTTATAGAAGAATAAGATCT TTGCTGATTTTGTAGTGGAAGGTATGCTGAATTTGCAAGGAAATTAACATCATGCCACTTTGGTGTATATGCAATGGATTGGATAGGTCATGGAGGAAGT GATGGATTGCACGGTTATGTTCCTTCTCTTGATCATGTGGTTGCAGACACTGTAAGTATAATTCTTGTACTTTCTTCCGTTTTTATAGATATAGCATTGT TGTACATATTCTTGTTTGTGATAGTGGGTCTTAGAATGGAATAGTTTTTAGGCATCAATGCATAGTTTCCGCCATTTTAGACGTTGGGACGGAATCAGAG AACTGAATACTGTGCAAATTTAAAATATATGTTGCCCTTTTCTTCTGTGAGTAATGCACTTAAAGCAGTGAAGCTGTCTCAGTTAAACCATTTTCATCAG CAAGTGCTGTATTCATGATTCAATTTCTGTGTAATTTTTATTTATGGTCACTTTCATTGCCTGGCGAAAGTTTGATTACTATGAACAATTTATAATATTT GTGTTATTTTTTCCCCTTTAAAAATTTATTGTATTTTCAAATGTAACTTGGTGATTTTGATTGTGTACTTCGTATATTGATTTTGATGTTATAAACAGGG GGCTTTCTTGGAAAAGATTAGATCAGAGAATCCTGGGATACCATGTTTTCTCTTTGGTCACTCTACTGGAGGGGCTGTGGTTTTGAAAGCTGCTTCCCTC CCTCACATTCAAATGATGGTGGAAGGAATTATATTAACCTCGCCTGCTTTGCGTGTGAAGCCAGCTCATCCAATTGTTGGTGTAAGTTTTTGCATTTGTA GGCTGTGGATTATGTTTGCAATTTATGTCTTTCTGAATTGTTGCTAAAATAGGCATCATCTGTTTTCAATGTTGTAATCAAACTATAGTCAATGTGATAT GAGCTATCGCTAAATATAGGCATGCCCCTTGTCGGATTTGAGTTTTGTCAATTGAAGCGAATGAGAATGAACACAATCACAACTGTTGTTTTACTTGTAT AAGTTGTATTATACCTTCGAGTTAAGGCTTGAAATTTTTTGTCTGTCTGAGTAACTGCATAAAAATTGGCTGGTGATTCATCCTCATTAATGCTTTTGCC ACCAATTCCTCTGCTTCTTATTTTGTCTCACGCCTCCGCTCCTGTCCGTTGAAGCATTGATCATGTTTTTCGTTAGAGAGTAAAAATTCCTAGTTGACAG TATAAGTAATTGTAACTAATATACTCTTATTCATTTCTACAATCTCTAGATTATAATGTTATCTTGCATTATGTTTGCATTTATTTTTCCGCGTGTTAAA ACGGATCTGCTCGATGTGTTTTGCAGGCTGTTGCTCCAATTTTTTCTCTAGTAGCTCCAAGGTTCCAATTTAAAGGAGCAAACAAAAGGGGAATACCGGT TTCGAGGGATCCAGCTGCAATGTTAGCAAAGTACTCTGATCCTTTGGTCTACACTGGACCTATAAGGGTCCGAACTGGCCATGAAATATTGCGGATATCC TCGTACTTAACGCGAAACTTCAAGTCTGTGACAGTGCCATTCTTTGTCCTGCATGGAACTGCTGATAAGGTAACTGATCCACTGGCATCAGAAGATCTTT ACAATATGGCAGCTTCAGAATTCAAAGACATAAAGCTTTATGATGGCTTCTTGCACGACCTTCTGTTCGAGCCTGAGCATGAAGAGATAGCTCGGGATAT TATCAACTGGATGGAAAAGAGATTATTTACAATTTGATAATGTCATGAACTAGAGGGGAAAATGATGCAAAGGTTGGCATGTGTAGAAATTGAAGTTGCC CCAAGGAAAGGGGTGGCATAAGTAGCATAGGTATTTTAGGTGTTAGATTTATATATGACAAATGTTTAGATAGGTATTTCATCCGGTAACTGATATCTGT TATTTCAGATCTTGTCCTGGGATGAGGTATGGCATGGGATCTGGGACAGTAGATCTTTACCACTATCAAGAATTTGTATATTTATTAGACTAGAAGTTTA ATTAGTGTTTTAATGCCCCTTATAGTTCTCGCATTCGTTGAATATGTTATGTTTTAATGCTTATCCACACTCAGTCTAATATGTGAAGTTTTTTGTGATA GACTCACGTAAGTATATAAAAACGGCAAATAATTGTTTCTTTTTCTCTGCTTTTGGATTTTGGAATAATGGAAAAAACGTAT BLAST |
| Tissue | pods |
| Gene name | LI_gene_193879; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_505954
| Blastp | Caffeoylshikimate esterase from Arabidopsis with 42% of identity |
|---|---|
| Blastx | Caffeoylshikimate esterase from Arabidopsis with 40% of identity |
| Eggnog | alpha beta hydrolase fold(COG2267) |
| Kegg | Link to kegg annotations (AT1G52760) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019415146.1) |
| Pfam | Serine aminopeptidase, S33 (PF12146.7) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |