Ll_transcript_504953

• Id Trinity: TRINITY_DN52594_c1_g2_i4
• Name Transcript: Ll_transcript_504953
• Sequence: CGTAAATGTTGGTACAAGTCCAAAAATGTGATACTTGCTGATGAGATGGGACTTGGGAAAACAATATCTGCTTGTGCTTTTATTTCAGCATTGTATTCTG AATTCAAGGTTTCACTTCCTTGCTTGGTTTTGGTACCTCTTTCCACAATGCGTAATTGGCTTTCTGAATTTGCAACATGGGCTCCTGATGTGAATGTTGT TGAATACCATGGCCGTGCAAAAGGAAGAGCCATAATTCGCCAGTTTGAATGGCACGCTAGTGACCCTGGTGGATTGAATAAGAAAACAGAAGCCTATAAA TTCAATGTGCTTTTAACTACATATGAAATGATTCTTGCTGATTCTTCTCTTTTGCGTGGAGTTCCTTGGGAAGTTCTCATTGTTGATGAAGCCCATCGAC TAAAGAATGCTCAAAGTAAACTTTTCAGTTTGCTGAATACATTCTCTTTCCAACATCGTGTGCTGTTGACGGGTACCCCTCTCCAGAACAACCTTGGTGA GATGTACAACTTGCTTAATTTCTTGCAACCGGCTTCATTTCCTTCTCTAGCTTCATTTGAAGAGAAATTTAATGATCTTACGACTACACAGAAAGTCGAT GAGTTGAAAAAACTCGTTGCTCCTCTTATGCTCCGTAGACTTAAGAAGGATGCTATGCAAAATATTCCCCCCAAGACAGAAAGAATGGTTCCTGTTGAGT TGTCATCCATCCAGGCTGAATATTACCGTGCAATGCTTACAAAGAATTATCAGCTATTGCGGAATATTGGGAAAGGGGTTGCCCACAAGTCTATGATGAA CATTGTGATGCAGCTGAGAAAGGTCTGCAATCATCCATATCTGATACCAGGAACTGAGCCCGATTCTGGATCTGTCGAGTTTCTTCACGAAATGAGAATA AAGGCTTCGGCAAAGTTGACTCTTCTGCATTCCATGCTTAAGATTTTATATAGGGAAGGACACAGAGTTCTTATTTTCTCACAAATGACCAAACTTCTTG ACATTCTAGAGGACTATTTAAATGGAGAGTTTGGTCCTAAAACATATGAGCGAGTGGATGGCTCTGTTTCTGTCACAGATCGTCAGGCAGCGATTACACG CTTCAACCAAGACAAGAGTCGATTTGTTTTCTTGTTATCCACTCGCTCTTGTGGACTTGGGATAAATTTAGCATCTGCTGACACTGTGATCATCTATGAT TCCGACTTCAACCCTCATGCTGATATCCAAGCAATGAATCGGGCACATCGAATTGGGCAATCAAAAAGGCTTTTGGTTTACAGGCTTGTGGTCCGTGCTA GTGTTGAAGAGCGCATCTTGCAGCTTGCTAAAAAGAAACTGATGCTTGATCAACTTTTTGTAAACAAGTCCGACAATCAAAAGGAAATAGAAGGTATTTT AAAATGGGGAACTGAAGAACTCTTCAATGATTCTCCTGGTCTGAATGGGAAAGGTACAGATGAAACTGAGAATAGCAGCAAAGTTGAGGCAGTAGCAGAG GTAGAGCATAAGCATCGGAAGAGGACTGGTGGTCTTGGAGATGTATACCAGGATAAGTGTACAGAGAGCAGTAGCAAGATTTTGTGGGATGAAAATGCGA TTTTAAAATTGCTTGATCGTTCAAATGTTCAAGATGGTTCAGCTGATATTGCAGAAGTGGATTGTGAGAATGATATGCTGGGCTCAGTGAAGGCCGTTGA GTGGAATGATGAATCAACTGAAGAGCATGGAATGGGTGAATCTCCTCCCGATGGGACTGATGATACGTGCACACAGAATTCTGAGAACAAAGAGGATATT ATTGTGGTTGTCAATGAAGAAAATGAGTGGGACAGATTACTGCGTATGAGGTGGGAGAAGTACCAAAGTGAGGAGGAAGCAGCTCTTGGTCGAGGGAAGC GGCAGAGGAAAGCTATTTCTTATCGGGAAGTATGTGCTGCACATCCTAGTGAAACAATGAGTGAGAGTGGCAGGGAGGAGGAAAAAGCGCCGGAACCAGA GCCTGAGCGTGAATATACGCCAGCAGGACGGGCCCTGAAGGCAAAATATGCTAAGCTCCGTGCTCGGCAGAAGGAACGACTTGCTTGCAGGAATGCAGTC GGAGGATCACAACCTGCTGATGGACTCCCAGTAACCGAGCCACTCCCACAAACTGAATCCAATGTCAAAGGTGGAGATCTGGGAGCTGGACCTACGCATC CAGTTCAAGAAGGGCCTTCTATAAACTTAATGGGCAGCAAACATGCTCAACTTTCTGAAGCTCGAAACGGCGATGCCAGCTTGTTTTCAAGGACCGACAG GCTTTCAAAACAGAAAACGAGCAGTCACATGGATGTTTCTGTCAATAATCCGGGCCGTTCTCTGCCTGACATTTTTCTTCCAAATCACCACTATATGGGG GGCTTGAACAGCATGAACTCTATGCCTACAAACAATTTGTCGCCTGTTCTGGGACTTTGTGCTCCTAATGCTAAACAAACAGAACCATCTGAACTTAGTG CTTCCAAGTTAAGTTGGAGACAAAATAGACATGGAGCCAGACAAGAGTTTCCATTCAGTCTTGCCCCTTGCTCTGGGACATCCATGGATGCCGACGTCAG AAGTCAGAAAGCGGCAGCAAAAACCAAACCATCAGAGGCATCGACATCGAACATAGAGCTTAGTTCAAGAAACAGCATGCATGATAACAGTTTCCCATTT GCTCCGTTTCCGCCAGCTTTGCAAGGAAAGGAACCCAATGCATTTGAAAATTTTGGTGCTAGGTTGGCCACTTTCCATGAGAAGATGCCGCTGCCGAACC TACCATTTGATGAAATGTTGCTGGCCAGATTTCCACTTACATCTAAAAGTATGGCAAGTTCAAATCTGGACCTCTTACCTCATTTGTCGTTAGGAGGCAG ATTTGAAGCTTTAAATGGATCTATGCAAGACTTTCCAATGCCAGCATTGCCTAATTTCAAAGTTCCTCCGGAAGATCTATTCAGACATAATCAGCAAGAG AGGGATGTGCCCCCTACCTTGGGTTTGGGACAGAGACCAACCACATTCTCGTCATTCCCAGAAAACCATAGGAAGGTGCTGGAAAACATAATGATGAGAA CCGGATCTGGATCTGGATCAAGTAGTTTACCGAAGAAATCAAAGCCAGATGGGTGGTCCGAAGATGAACTTGATTCCCTCTGGATTGGGGTTCGTAGGCA TGGAAGGGGTAACTGGGATGTTATGCTCAGAGATCCCAAGTTAAAGTTCTCAAGGAATAAGACACCGGAGAGTTTATCAATGAGGTGGGAGGATGAACAA ATAAAGGTGTTTCAGGGGCCAGCTTTTCCTGTGCCAAGATCATCCAAGATGGCAAATGAAAAGTCAACCAAATCTGCACATTTGCCGATTTCGGACGGAA TGATGGAAAGGGCCTTGCAAGGAAGCAGATTTGTTATGCCACCCAAGTTTCAAAACCATCTGACCGACATGAAACTAGGGATAGGTGACCCTGCAACTAG CATGCCACCTTTTCTGCCTCTTCCATCTTGGGCTTATGAAAAGAACAGAGCACAATTTCATGAAAATGCTGCAGCTGAAACATCTGATAGACCAGGGACT TCGTCCAGTGTGCCTACTGAAAGGCCATTTTTACTTGATTCTTTCGGGACAAGTCGCTTCGGTTCTTTAGGTGTGAATTATCCTGGTAATCTTGATATAC AGCGAAAGGAGGATGAACAAGCAAACACCAAGCGTGGAAAGATGCCTTTAGTTCTGGATGAATCACCCAATGATATGCGTGATAACTGCATGAATGTAGG AAATGGAGAATCTACCAGCTCGGGATTGCTATCTAACCTCATTAGGTCTGATCTTTTGCATTCTAAAGGGGAGGAAGTAGCTGGAAGCGGTAGTTCAAAA GGGAAGCTTCCTCACTGGTTGCGAGAAGCTGTGAGTTTGCCATCCATACTTCCTGATCCCGAACTGCCACCCACAGTGTCGGCCATTGCTCAATCAGTTC GCATGCTATATGGAGACGATAAGCCGACAATTCCTCCATTTGTGATTCCAGGACCACCTCCCTCCCTCCCAAAGGACCCCAGGAGCAGTCTCAAGAAGAT AAAGAGAAGATCACACAAGTTGAATCGGGTTCAGCCAAACTTCGCTGGAACCAGCAGGGACATACGCAGCAGCTGCCATGTTGATAATGGTGCTTCGAGT TCAAACCCATTGGCTCTACTTTCTCAGATTCAGTCTGACCTGAACTTGCCTCCACTGAGTTTAACGAAAAATGCTGGCTCAGGACTGTCTCCTTCTCCTG AAGTGCTCCAGTTGGTTGCATCCTGTGTTGCTTCTAGCCCGCTGCATCTTCCATCCACTTCAGGTCCTTCAAGCATTCTCGAGACCAAGCTCCCATTGCC TGTTGGTAAAGCTGAATTCGAAGACTCGGAAGGCGCCTTCATAACGAAGCAGCCGAGGAACATGTCACCAGAAACTCGGTGTCCACCTCAGGAGCATGAA GTAGTTGACCTTGATAGTGGAGATTCCAGTAAGACTCAGTCAGATCCCTCCCGTGCCGATCGGCCCGATGAAGAAGTGGAGGTATCATCTGAGGGAACTG TCTCAGATCATGCTGTGGGAGACCAAGAAACACAACTCTAGTTTCTTGGATGAAAATAAAACCATATTCTTTCTTGCTGCTAAAGCCTTTTCACCAATGC CCTTGAATTTTTGTAGGTAATGACAATGAGTGAACCATGGCATATAGGATTGCTCAGAACATGTAAAGTTCTTTTTCTCTATGTGAAATGAAATATATAG TGTTGCTTGCTGGGTATTGTTTGC
• Tissue: pods
• Gene name: LI_gene_194001;
• Additional information: details;

Expression of Ll_transcript_504953

FPKM

• PAB: 2.1
• PNAB: 7.5
• PS1: 7.5
• PS2: 8.4
• PS3: 10.8
• PW1: 5.1
• PW2: 4.9
• PW3: 4

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_504953

• Blastp: Protein CHROMATIN REMODELING 4 from Arabidopsis with 57.53% of identity
• Blastx: Protein CHROMATIN REMODELING 4 from Arabidopsis with 57.99% of identity
• Eggnog: helicase(COG0553)
• Kegg: Link to kegg annotations (AT5G44800)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019447906.1)
• Pfam: SNF2 family N-terminal domain (PF00176.22)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;