Ll_transcript_464660

• Id Trinity: TRINITY_DN52642_c0_g1_i17
• Name Transcript: Ll_transcript_464660
• Sequence: AACTGCATACGTGTCAAACATTGAAAGCCAATGAAGAAGAAAAATCAAAGAAGAAGTAGGACACATAAGGGTCAAAGTTGGCACTTCACTTCACGGATTC ACCCTTCCCTTCTTACAAAGGGACACTATCCTTAATCCCCTATCCTCTTTCTCCTGTTGTGTCTGCTCATACTTCTCTCTCTCTCTTCTCTATATAAACT CATTCTTTCTAACTTCATTTCACTCATTCTTCTTTCTTCTCTCCATTTTTATTATCACTTTTTTGAGACATCACCAATTCACCATGATGTTGTCTATTAA ACGTGCTGCTTCCACTACCGTTCGATCCATCACTTCTTCAATTTCCTCTCCCACTTTCTCCAGAAACCTTCATGCCTCTGGTGGAAGGAAGAAGATTGTG GGTGTTTTCTACAAAGGGAATGAGTATGCTTCCAAGAATCCTAACTTTGTAGGCACTGTTGAAGGAGCCCTCGGCATTCGCGAGTGGCTCGAATCACAGG GTCATGAGTACATTGTCACTGATGATAAAGAAGGACCTGATTCTGTACTTGAGAAACACCTTCCTGATCTCCATGTCCTCATCTCTACTCCGTTCCATCC GGCCTATGTCACAGCAGAAAGAATCAAGAAAGCTAAGAACTTAGAGCTGCTTTTGACGGCTGGCATTGGATCTGATCACATTGATCTTAATGCGGCTGCT GCTGCTGGATTAACTGTTGCAGAGGTCACAGGAAGCAACGTGGTGTCGGTTGCAGAGGACGAACTCATGAGAATTCTCATTCTAGTGAGGAATTTCTTAC CCGGGTACCATCAGGCCGTTAATGGAGAATGGAATGTGGCTGGAATTGCACATAGAGCATATGATCTTGAAGGAAAGACTATAGGCACGGTTGGCGCTGG ACGTATTGGCAGGCTCTTGCTCCAAAGGTTGAAGCCTTTTAACTGTAATCTTCTGTACCATGATCGTCTTCAGTTGGACCCTGAGTTGGAGAATCAACTC GGAGCTAAGTATGAGGAGGATCTTGATGCAATGCTTCCAAAATGTGATGTACTTGTCATCAACACTCCTCTCACCGATAAGACAAGGGGATTGTTTGACA AAAATAGAATTGCAAAGTGCAAGAAGGGTGTCTTGATTGTTAATAACGCGCGAGGAGCAATCATGGATGCACAAGCAGTTGCTGATGCAAGCTCTAGTGG ACATATTGCAGGTTATAGTGGCGATGTTTGGTTCCCACAACCGGCTCCAAAGGATCACCCGTGGCGCTACATGCCAAACCATGCGATGACTCCTCATATT TCTGGTACCACCATTGATGCACAGCTACGTTACGCCGCCGGCGTCAAAGACATGCTTGAGAGGCACTTCAAGGGCGAAGATTTTCCAGAGCAACACTACA TTGTGAAAGAGGGTCAACTCGCAAGCCAATACCGTTGAAGTCGTGTGTATTAAGCGTTCGTCTTCCATTGTTAAGGTCATTGTTGGACCACATATGCAGG AAGGAACTCAATAATGAACACTTGAGTTTGAACTTGTTTAGTTTGTGTGAAATAAAACCAAAATGAATGCTTTAGTATTCAAGAATGGTCTGTGTTTTTT TGTTGCTGGGAATTTGAGTATATTGTTTGCTGTGCATCTTAGCATTGAATAAGATATGCTCATAAGGGAAATTAACTATAGTAGCATTTTGTTTCACCCT AAAATTGGAATACATATTTCTTAATTGGCATTTTGAAGGCTTAAATCACTTATTGTTTATTGGCAGGTGATAGAGTAAAATTTGTTGGTAACTTCCCTTC TGCTGTCTCATCGCTACAGAGTTATCCTTCAAGGGGACCAAACTATGGTTCCAGGGGTAAAGTTCTCCTTGCTTTTGAAGATAACGGGTCTTCAAAAATC GGAGTCAGGTTTGACAAACCAATTCCAGATGGTAATGATCTTGGAGGCATTTGTGAAGTTGATCATGGATTCTTTTGTTCTGCAAATCATTTACTACGAG TAGATGGTACTGGAGGAGATGACATTGACAAACTTGCAATTAATGACATCTTTGAGGTTGTTTATAATCAGAGTAAAAGTGGTGCTCTAGTGTTGTTCAT TAAGGACATAGAGAAGGCAATGGTTGGTAATTCTGAAATTTTGAAAAGTAAATTTGAAAACTTGCCACAGAATGTTGTTGTAGTTGGCTCGCATACCCAG CTAGACAACCGTAAGGAAAAGACCCATCCAGGAGGCCTTCTATTTACAAAGTTTGGGAGCAATCAGACAGCACTACTCGATCTTGCTTTTCCTGATAACT TTAGTAGACTGCATGATAGGAGCAAAGAAACCCCCAAAGTAATGAAGCAAGTTAATCGCCTTTTCCCAAACAGGGTGACAATACAACTGCCTCAGGATGA GGCTCTACTTTCTGATTGGAAACAGCAACTAGAGCGCGACATTGAGACTATGAAAGCCCAGTCCAATGTTATCAGCATTCGCTCAGTTCTCAACAAGATT GGATTGAATTGCTCTGACATCGAGTCACTTTGCATCAAAGATCAAACCCTAACAACCGAAAGTGTGGAGAAGATAATTGGCTGGGCTATAAGCTACCATT TTATGCAGTCATCTGAGCCTTCTAACAAAGACTCCAAGCTTGTGATATCTGCAGAAGGCATTAAATATGGGCTAAATATTCTACAAGGCATTCAAAATGA AAACAAGAGCTCAAAAAAATCACTTAAGGATGTGGTAACTGAGAATGAATTTGAGAAAAAACTGCTTGGTGATGTTATTCCACCAACTGATATTGGGGTC ACATTTGATGATATTGGAGCTTTAGAGAATGTAAAAGATACCTTGAAGGAATTGGTTATGCTTCCTCTTCAAAGACCTGAGTTGTTTTTCAAAGGTCAAT TGACAAAGCCTTGCAAGGGAATATTGCTTTTTGGCCCACCTGGCACTGGAAAAACAATGCTTGCAAAGGCTGTAGCAACTGAGGCTGGGGCAAATTTTAT AAATATTTCAATGTCCAGCATTACTTCTAAGTGGTTTGGTGAAGGGGAAAAATATGTTAAAGCGGTCTTTTCTCTGGCCAGCAAAATTGCTCCAAGTGTT ATTTTTGTTGATGAGGTTGATAGTATGCTAGGGAGACGTGAAAATCCTGGTGAGCATGAGGCTATGCGTAAAATGAAGAATGAGTTTATGGTTAATTGGG ATGGTCTCCGTACCAAAGATAAAGAGCGTGTACTTGTTCTTGCTGCTACAAACCGACCTTTTGATCTTGATGAGGCTGTTATTAGGAGGCTTCCACGCAG ATTGATGGTTAATTTGCCAGATGCCCCTAACAGAGAAAAAATTATGAGAGTCATTTTAGCGAAAGAAGATTTGGCACCAGATGTTGATTTGGAAGCAATA GCAAATATGACTGATGGATATTCGGGTAGTGACCTAAAGAATCTATGTGTTACAGCAGCACCCTGCCCCATAAGAGCGCTTTTAGAGCAGGAAA
• Tissue: pods
• Gene name: LI_gene_194357;
• Additional information: details;

Expression of Ll_transcript_464660

FPKM

• PAB: 16.5
• PNAB: 12.1
• PS1: 14.6
• PS2: 13.2
• PS3: 17.6
• PW1: 10.3
• PW2: 13.2
• PW3: 12.7

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_464660

• Blastp: ATPase family AAA domain-containing protein 1 from Rattus with 45.42% of identity
• Blastx: Formate dehydrogenase 1, mitochondrial from Oryza sativa with 87.04% of identity
• Eggnog: Aaa atpase(COG0464)
• Kegg: Link to kegg annotations (309532)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019441763.1)
• Pfam: Holliday junction DNA helicase ruvB N-terminus (PF05496.11)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;