Ll_transcript_464662

• Id Trinity: TRINITY_DN52642_c0_g1_i19
• Name Transcript: Ll_transcript_464662
• Sequence: AACTGCATACGTGTCAAACATTGAAAGCCAATGAAGAAGAAAAATCAAAGAAGAAGTAGGACACATAAGGGTCAAAGTTGGCACTTCACTTCACGGATTC ACCCTTCCCTTCTTACAAAGGGACACTATCCTTAATCCCCTATCCTCTTTCTCCTGTTGTGTCTGCTCATACTTCTCTCTCTCTCTTCTCTATATAAACT CATTCTTTCTAACTTCATTTCACTCATTCTTCTTTCTTCTCTCCATTTTTATTATCACTTTTTTGAGACATCACCAATTCACCATGATGTTGTCTATTAA ACGTGCTGCTTCCACTACCGTTCGATCCATCACTTCTTCAATTTCCTCTCCCACTTTCTCCAGAAACCTTCATGCCTCTGGTGGAAGGAAGAAGATTGTG GGTGTTTTCTACAAAGGGAATGAGTATGCTTCCAAGAATCCTAACTTTGTAGGCACTGTTGAAGGAGCCCTCGGCATTCGCGAGTGGCTCGAATCACAGG GTCATGAGTACATTGTCACTGATGATAAAGAAGGACCTGATTCTGTACTTGAGAAACACCTTCCTGATCTCCATGTCCTCATCTCTACTCCGTTCCATCC GGCCTATGTCACAGCAGAAAGAATCAAGAAAGCTAAGAACTTAGAGCTGCTTTTGACGGCTGGCATTGGATCTGATCACATTGATCTTAATGCGGCTGCT GCTGCTGGATTAACTGTTGCAGAGGTCACAGGAAGCAACGTGGTGTCGGTTGCAGAGGACGAACTCATGAGAATTCTCATTCTAGTGAGGAATTTCTTAC CCGGGTACCATCAGGCCGTTAATGGAGAATGGAATGTGGCTGGAATTGCACATAGAGCATATGATCTTGAAGGAAAGACTATAGGCACGGTTGGCGCTGG ACGTATTGGCAGGCTCTTGCTCCAAAGGTTGAAGCCTTTTAACTGTAATCTTCTGTACCATGATCGTCTTCAGTTGGACCCTGAGTTGGAGAATCAACTC GGAGCTAAGTATGAGGAGGATCTTGATGCAATGCTTCCAAAATGTGATGTACTTGTCATCAACACTCCTCTCACCGATAAGACAAGGGGATTGTTTGACA AAAATAGAATTGCAAAGTGCAAGAAGGGTGTCTTGATTGTTAATAACGCGCGAGGAGCAATCATGGATGCACAAGCAGTTGCTGATGCAAGCTCTAGTGG ACATATTGCAGGTTATAGTGGCGATGTTTGGTTCCCACAACCGGCTCCAAAGGATCACCCGTGGCGCTACATGCCAAACCATGCGATGACTCCTCATATT TCTGGTACCACCATTGATGCACAGCTACGTTACGCCGCCGGCGTCAAAGACATGCTTGAGAGGCACTTCAAGGGCGAAGATTTTCCAGAGCAACACTACA TTGTGAAAGAGGGTCAACTCGCAAGCCAATACCGTTGAAGTCGTGTGTATTAAGCGTTCGTCTTCCATTGTTAAGGTCATTGTTGGACCACATATGCAGG AAGGAACTCAATAATGAACGCTTGAGTTTGAACTTGTTTAGTTTGTGTGAAATAAAACCAAAATGAATGCTTTAGTATTCAAGAATGGTCAATGTTTTTT TGTTGTTGGGAATTTGAGTATATTGTTTGCTGTGCATCTTAGCATTGAATAAGATATGCTCATAAGGGAAATTAACTATAGTAGCATTTTGTTTCACCCT AAAATTGGAATACATATTTCTTAATTGGCATTTTGAAGGCTTAAATCACTTATTGTTTATTGGCAGGTGATAGAGTAAAATTTGTTGGTAACTTCCCTTC TGCTGTCTCATCGCTACAGAGTTATCCTTCAAGGGGACCAAACTATGGTTCCAGGGGTAAAGTTCTCCTTGCTTTTGAAGATAACGGGTCTTCAAAAATC GGAGTCAGGTTTGACAAACCAATTCCAGATGGTAATGATCTTGGAGGCATTTGTGAAGTTGATCATGGATTCTTTTGTTCTGCAAATCATTTACTACGAG TAGATGGTACTGGAGGAGATGACATTGACAAACTTGCAATTAATGACATCTTTGAGGTTGTTTATAATCAGAGTAAAAGTGGTGCTCTAGTGTTGTTCAT TAAGGACATAGAGAAGGCAATGGTTGGTAATTCTGAAATTTTGAAAAGTAAATTTGAAAACTTGCCACAGAATGTTGTTGTAGTTGGCTCGCATACCCAG CTAGACAACCGTAAGGAAAAGACCCATCCAGGAGGCCTTCTATTTACAAAGTTTGGGAGCAATCAGACAGCACTACTCGATCTTGCTTTTCCTGATAACT TTAGTAGACTGCATGATAGGAGCAAAGAAACCCCCAAAGTAATGAAGCAAGTTAATCGCCTTTTCCCAAACAGGGTGACAATACAACTGCCTCAGGATGA GGCTTTACTTTCTGACTGGAAGCAGCAGCTAGAACGTGACATTGAAACTATGAAAGCCCAGGCGAACATTGTCAGCATTCACTCAGTTCTCAACAGGATA GGATTGAATTGCTCTGACCTTGAGTCACTTTGCATCAAAGATCAAACCCTAACCACTGAAAGCGTGGAAAAGATAATTGGCTGGGCTATAAGTTACCATT TTATGCATTCAACCGAGTCTTCTAACAAAGACTCTAATTTTGTGATATCTGCAGAAAGTATTAAGTATGGGCTAAGCATTCTTCAGGGCATTCAAAACGA AAACAAGAGCTCAAAAAAATCACTGAAAGATGTGGTAACCGAGAATGAATTTGAGAAAAAACTGCTTGGTGATGTTATTCCACCAACTGATATTGGGGTG ACATTTGACGATATTGGAGCTTTAGAGAATGTGAAAGATACCTTGAAGGAATTGGTTATGCTTCCTCTTCAGAGGCCTGAATTGTTTTGTAAAGGACAGC TAACGAAGCCTTGCAAGGGAATACTGCTTTTTGGCCCACCTGGCACGGGAAAAACAATGCTTGCAAAGGCTGTAGCAACTGAAGCAGGAGCAAATTTTAT AAATATTTCAATGTCTAGCATTACTTCAAAGTGGTTTGGTGAAGGGGAGAAATATGTTAAAGCAGTCTTTTCTCTGGCCAGCAAAATTGCTCCAAGTGTT ATTTTTGTTGATGAGGTTGATAGTATGCTAGGGAGACGTGAAAATCCTGGTGAGCATGAGGCTATGCGTAAAATGAAGAATGAGTTTATGGTTAATTGGG ATGGTCTCCGTACCAAAGATAAAGAGCGTGTACTTGTTCTTGCTGCTACAAACCGACCTTTTGATCTTGATGAGGCTGTTATTAGGAGGCTTCCACGCAG ATTGATGGTTAATTTGCCAGATGCCCCTAACAGAGAAAAAATTATGAGAGTCATTTTAGCGAAAGAAGATTTGGCACCAGATGTTGATTTGGAAGCAATA GCAAATATGACTGATGGATATTCGGGTAGTGACCTAAAGAATCTATGTGTTACAGCAGCACACTGCCCAATAAGAGAGATTTTAGAGAAGGAAAAGAAGG AGAGAAATTCAGCATTGGCTGAGAACAAACCTTTACCTGTATTGTGTAGCAGTGCTGACATTCGTCCCATGAAGATGGAGGATTTTAGATATGCTCATGA GCAGGTTTGTGCCAGCGTGTCAACAGAATCATCAAATATGGACGAGCTACTCCAATGGAATGACCTTTATGGAGAAGGTGGATCGAGAAAAATGAGATCT TTGAGCTATTTCATGTAAAGCTCTCTCTGTATATATCGTTTCTTGCTTAGGCAATCATTCTCACCTAAATGGTGCAAGGTTGGCGACCAGTTGATATGGA AATTTCATCATTGGTCCTGCCCCATTGTATTATATCGTAGGTTCTCTTTTTGTCTTCTTTGCTCCAACCCTCACCTACCCACATTTTTTCAGAGTATATT TTGTTGACAATTTCACCGGAGATAAATGGTTATTTTTAGGCACCCTGCTGATCTTTACTTTCTTCAGACTTTTATGGGGTGCCATGTTCTGGGGGCTTTC TGTTTGTAAATACCTTGTTTTCTTTCCTTCAAGAAATAAAGTAATTCCTATTTTTGCTAATTTATAAATTAAATTGTATGCCATTGGGTCCATGGCATTT GTAATTTGCACCGTAACCCCTACCTCTAATATATTATTTGCGTGTATGTGTTTGTGTAGCTAAATGGAAAATCCGTTTACTGTCATTGTTCATTTTAATT CAAAAT
• Tissue: pods
• Gene name: LI_gene_194357;
• Additional information: details;

Expression of Ll_transcript_464662

FPKM

• PAB: 14.6
• PNAB: 8.8
• PS1: 9.9
• PS2: 10.3
• PS3: 12.7
• PW1: 8.7
• PW2: 10.3
• PW3: 8.9

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_464662

• Blastp: ATPase family AAA domain-containing protein 1 from Rattus with 41.5% of identity
• Blastx: Formate dehydrogenase 1, mitochondrial from Oryza sativa with 87.04% of identity
• Eggnog: Aaa atpase(COG0464)
• Kegg: Link to kegg annotations (309532)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019441763.1)
• Pfam: Holliday junction DNA helicase ruvB N-terminus (PF05496.11)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;