| Id Trinity | TRINITY_DN52651_c0_g1_i12 |
|---|---|
| Name Transcript | Ll_transcript_463227 |
| Sequence | AGAAAATGTAAAGAATAAACATATAAAAAAGATATGAAGAAGTAACGGAAAAATGGTTAGTGACGACGCATTAAGCAGAGAAGTGAATCCTCGTTTTTCA CGAAATTTTGGTCAATCTGCAGAATCCTCACTTTCACTTTCAAACTAGTTTCTGGGTTGGCTCAGCATTTAATGGTTTTCTTTCTAGGTTGATTGTGGAA AGATAAATTTGTAATTTAGAGTAAATGGACAATTATATTTGTCTTAGTTCATCCGACGATGACCTAGAGGAGATAGAAGATCCAAGGAGGTCTCTCCCTG AATGGGCTGGTCCTGAAAGGAATTCAGACAATGGTGGGTGGTCTAAGAAGGGTAGCTCTTCAGGAGGAGCAAATACTTCAAACACAACTTCTAATGTCAA TAGTCATTCACAAACCAGACCTCATACTCAACCCTCTTCCAGCAACAATTCACTGAATCACAGAGTTTCACAAAGGGGTGAACCTTCCTATCGTACCCAG AATGGAAACTCGGGTCAGCTTCACACGGTCAACTCCCGAATTCCTAATGTTTCCGGTTCCGATTATGACAAAATGCCGTCTCAAGAAGCTTTCAAGAGGA CCCTTCCAGTATCTCTTCAGCCATCAGTAACAAAGGCTCTTCCATCTTCCTCTTTTGCACCAGATATCAGAGCAATCAACTCAAAAGATCACATGACTAG CAGTCACTTTCATGATACATATAATAGTCGTCGCCATGGAGTAGTAGGGCCTAGCATGACCGGTGACAAGAGCTACATTCGTGACAATTATAACAGGGGA AGTGATGGAGATCGTTTTATGTTTCAAAATGGTGGGAGTAGGATTCTTCCTTCATCTTTGGCACATGGAAAGGCTATAAATCCACAGTTCGCCAGTTCCA GTGAATCCGCATACCGGTCTGGAGCAGTTGATGAAAGGGCTTCTGCAACTGACGAGAGACTTATTTATGAGGCAGCATTACAGGATCTCTATCGATCAAA GACGGAAACTGATTTACCTGATGGTCTTATGTCCGTCTCTCTTCTGAGACATCAGAAAATTGGACTAGCGTGGATGCTTCAGAAGGAAAACAGAAGTTTG CATTGCCTGGGGGGTATTTTGGCTGATGATCAGGGCCTTGGAAAGACAATTTCGATGATTGCCCTTATCCTAATGCAGAAATCATTGCAGTCAAAATCAA AAACAGATGATGCATTCAATCATAAAACTGAAGCTTTGAATTTGGACGACGACGATGATAATGGTATTGTTGATGTGGATAAGATTAAAAAGAATGAAGA ACCTGATAATATAAATCCTATTACAGAGCCAAGCAGTTCAATACGGGAACCGAGTAGGAAAAGGCCTGCTGCTGGTACATTGGTCGTCTGCCCTGCAAGT GTTGTTCGACAGTGGGCCAGGGAGCTTGATGAAAAAGTTGGAAATGAAAAGCTTTCTGTTTTAATTTATCATGGGGGCAGTAGGACAAAAAATCCTGATG AGCTTGCAACATATGATGTGGTTATCACAACTTATGCTATTGTGACTAATGAGGTTCCAAAGCAACCATTAGTGGACGATGATGAAAGTGATGAAAAAAA TGGTGAAAGATTTGGGTTATCTTCTGAGTTTTCTGTAAGTAAAAAGAGGAAAAAGGCATATAATGGAAATAAGAAGAGTAGAAAGGGTAGAAAGGGAATT GACAGCTCTCTCGATTGTGGTTCTGGCCCTCTTGCAAAAGTAGGTTGGTTTAGGGTTATTCTAGATGAAGCTCAGACAATCAAGAATCATAGAACTCAGG TGGCTAGAGCTTGCTGCAGCCTTAGGGCCAAAAGAAGGTGGTGCTTATCTGGAACGCCTATCCAAAATACTATTGACGATCTGTATAGCTACTTTAGGTT CCTTAGGTATGACCCTTATGCTGTATATAAATCATTCTACAATACAATTAAAGTTCCAATATCCAGAAATTCTATCCACGGTTATAAGAAGCTTCAAGCA GTCTTGAGGGCCATAATGCTGCGTCGTACAAAAGGTAATTTTTCGTTCTCTAAGAATGTATTTGCTGATTTCCTGACCGGATAGATTGTATGCATTTACT TTTTTCCTGGCTTGGCATAGGTTCAGTGCCCCTTTAATATTCTCGCTGATCTCTTCTCAGGATTGTCATTTAAATTATCTTTTGTAATTTCTTTTCATTT CTTGTCCAACCTTTGTTAGTACCGCTCCAGTATCAGCAAGAGGAACCTTCTGAAGCCAAAGTGCCTACCCAACCACATAAATTTTTCTCTATTTTTTGGC TAATTTTTCATATCCTTTTTAATGATGGAGTTATTCCTCCAATTCAATGAACCCATGCTTTAATTCTTTTACCATACACACAATATTTGCTTGGTTGAGG GATTGGACGGAACATTTCAGCCTTTAAGGTTTTCATTTGTTTACTGGAGCTAGAGTTTCCTTGAAACTGAAGTTGGAGTCAAATATACTGCACGGGATAA GTATGTGTTTTGCTTGTTTTATAATATCAATTTTACACTTGTGCATTTGTTTAGGAACTTTGATCGATGGGCAGCCAATTATCAATTTGCCCCCTAAAAC AATTGAGCTGAATAAGGTGGTTTTCTCTGGTGAGGAGCGGGCCTTCTACACCAAGTTGGAAGCAGATTCACGTTCTCAATTTAAGGCATATGCTGCTGCT GGCACAGTGAACCAGAACTATGCAAATATCCTTTTAATGCTTTTACGACTCCGTCAGGCTTGTGACCACCCACTCCTTGTTAAAGATTATAATTCCAATC CTGTCGGACAGGATTCTATTGAAATGGCAAAAAGGCTTCCAAGGGATTTGCTCATTAATCTATACAAGGAATTGGATACAAGCTCTGCTATCTGCCATGT TTGCAATGATCCACCTGAAGACCCTGTTATTACTATGTGTAGCCATGTCTTCTGTTATCAATGTGTATCAGACTTTTTGACAGCTGATGATAATACGTGC CCCGCAACTTATTGTAAAGAAACAGTCGGTGAAGATGTTGTTTTCTCGAAGGCTACTTTGAGAAGCTGCATCTCTGATGATCTTGATGGCAGTAGTTCCT CAAATTCGCATCATGTTGATTATTCACTATTTCAAGATAGTGAGTACAATTCATCTAAAATCAAAGCTGTCCTTGAGATTCTTATGTCAAATCGTAAAAT GAAGGCTCCTAGTTCTGGCTCACCAAATACCTCTGGAGGCCGTGGAGATTTACTGTCTTCTGATGTTTTATGTGTTGAAGATTGCGATTCAGATGTTCAG GTTACAAAACATACAAAAAGATATTCAGAGCCTGCGACTGAAGGACCAATAAAGGCAATAATTTTTTCCCAGTGGACTAGTATGTTGGACTTAGTCGAGG ATGCATTGAAGCAATCTCGAATTCGTATACGATACAGGAGACTTGATGGTAGGATGACTCTACTTGCAAGGGACAAAGCTGTTAAGGATTTTAATACCGA TCCTGAGGTAACCGTTA BLAST |
| Tissue | pods |
| Gene name | LI_gene_194435; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_463227
| Blastp | Helicase-like transcription factor CHR28 from Arabidopsis with 55.02% of identity |
|---|---|
| Blastx | Helicase-like transcription factor CHR28 from Arabidopsis with 58.24% of identity |
| Eggnog | Transcription termination factor, RNA polymerase II(ENOG410XPDU) |
| Kegg | Link to kegg annotations (AT1G50410) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019427503.1) |
| Pfam | SNF2 family N-terminal domain (PF00176.22) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |