Ll_transcript_462832

• Id Trinity: TRINITY_DN52657_c0_g3_i12
• Name Transcript: Ll_transcript_462832
• Sequence: GTTCGTGCGCGGTACTCTCACAATGCAAAATCTTTCTCCTTCACTTAGAAACTCTCAACTCCCTATTCCTTCGTTTTATTGCATTCTCTGATTCGCACTG TGATTATTCTCTCTCTCTCTCTCTCACTCTTTCTGTCGTTTTTTCAATCCTTTTGCGTTTCGTAACTGTTCCCATTCATGGCCAAGGGCGTAATCTCAGA CGACGAAGATGAGGTTGAACTCGACGAGGAGGAGAGGGAACCGGTCGAGGGGGATGGATTAGATGAGGGTCGCGATGTGGACGATGATGAAGATGAAGAA GAAGAAGGGCAGGATGAATATGAAAATGATGGATTTATAGTTGATGAGGATGAAGAGGAGCAGGATGAAGAAGAGAGAGCAGAAAGTGATGAAGAACGCC ACAAGAGGAGAAAGAAGAAGAGAAAGGAGGAATATATTCTTGATGAAGATGATTATGAGCTTCTGGAAGACAATAACATCAATATTCATCGTCGGAAGGA CATTAAAAAGTTCAAGCGACTGAAAAAAGGCCAGAGGGATACTGAGGAGGAACCATCTGGGCTATCTGATGAGGAGGATTTTGTTGGAAGTGGTAAAGTT GGGCGAACTGCTGAGGAGAAGCTTAAACACCGTTTATTTGGTGATGAAGAAGCTTTACTTGAGGATATTGTTGAAGAGGAGGAACAAGGAGAAGAGGAGG AGGATGCAGACATTGGAGAAGATGATGAAATGGCCGACTTCATTGTGGATGAAGAAGAAATTGATGAGAATGGAGCTGCTATGAGGCGAAGGAAGCCGAA GAGAAAGAAAACTAGGCAGGCACCTGGAGTCTCTTCCTCAGCTGTGCAAGAAGCTCAAGATTTATTTGGTGATGTTGAAGAGTTGCTGCAGACTCGCAAG AAAAATCTAGAGCTACATGAATATAGAGAGACTAGACTTGAAGATGAATTTGAGCCTATTATTATTTCTGAGAAGTATATGACAGAGAAGGATGACGTGA TTAGGGAGGTTGATCTTCCAGAGAGAATGCAGATATCTGAGGAGAGTACTGGTACTCCTCCACTGGATGGAAGTATAGATGAAGAGAGCCGGTGGATAGT TAAGCAACTTAGTGATGGAGCAGTCCCTTGGATTTGCAAAAAAATTTCTACGCCCCAAAATAATAGAAAGAACCTACCAATTGACGAGAATGATATTATC AGATTTTTGGAACTGTATCATGTGCAAAAATTAGATATTCCTTTTATTGCTATGTATCGGAAGGAGGAGTGCTTAAGCCTATTGAAAGACCTAGAGCGAC ATGAAGCTAGTGATGAGAATTCTGATAAGAATAACATGACACCTGCTCTAAAGTGGCACAAGGTACTTTGGGCTCTTCAGGACTTAGACAGGAAGTGGTT GCTCCTTCAGAAGCGGAAGAGTGCCTTAGAATCATACTATAGTAAACGGTTTGAAGAAGAGTCCCGACGTATTTATGATGAAACAAGACTAAACTTGAAC CAGAAATTATTTGAATCAGTAATGAGATCATTGAAGGAGGCAGAATCTGAGAGGGAGGTTGATGATGTAGACTCCAAGTTCAACTTGCATTTCCCACCAG GTGAAGCCGGTGTTGATGAAGGACAATACAAGAGACCAAAAAGGAAGTCCATATACAGCACTTACAGTAAGACAGGTCTGTGGGAGGTTGCGAACAGGTT TGGGTGTAGTTCTGAGCATCTTGGAATATGTCTATCTGAAGTTAAGGTGCCTGAGTTGGTAGATCCAAAGGAAACACCAGAGGAGATGGCTTCAAACTTT ACATGTGCTATGTATAATACCCCTGAAGAAGTACTTAAATGTGCTAGGCACATGGCAGCTATTGAGATAAGTTGTGAGCCTAGCATTAGGAAACATGTTC GTAGCCACTTTCTTGACAATGCTCTGGTGTCAACTTGTCCTACTGCCAGTGGAAATGTGGCAATTGATTCTTTTCATGACTTTGCTGGGGTAAAATGGCT GCGAGAGAAGCCTTTGTCTAAATTTGATGATGCACAGTGGCTCCTCATACAGAAGGCAGAAGAGGAGAAACTTCTTCAAGTCACTATTAAGCTTCCTGAA GAGAATCTTAATAAATTGTTAGATCAATTCAATGAGTATTATGTTAGTGACAGTGTTAGCAGATCTGCTCAACTGTGGAATGAACAGAGGAAGTCCATAC TGCATGAGGCCATTTTTCGACTTGTTCTACCTTCAATGGAAAAAGAGGCAAGAGGAATCTTGGCAAGCAAAGCAAAGAATTGGCTACTTATGGAGTATGG GAGGGCCTTGTGGAATAAGGTTTCTGTCGGACCTTATCAACAGAAGGAGAATGATCTTAACTCTGGTGATGAGGCTGCTCCTAGGGTTATGGCATGCTGT TGGGGCCCCGGAAAGCCACAAACAACTTTTGTTATGTTAGATTCATCAGGGGAAGTGCTAGATGTGCTTTACACTGGATCCCTTACTTTAAGGTCGCAGA ATGCTAGTGACCAACAACGGAAGAAGAATGACCAGGACCGTGTGTTGAAGTTTATGACAGATCACCAACCACATGTTGTCGTTTTAGGTGCAGTAAATTT GTCTTGCACTCGTTTAAAGGAAGATATATATGAGGTCAGAATTTGGTTTTTATGCATGCGTCATTATTTTGGTTCCATTCCATTCCATTCAACCAATCAT GCACCCAATGGTTTGTTTTATATATGTACAAATTTTCTCAAATAAGCAATTACTCTGGGCACATATAACTACCCTCCTCAGGCCCCATTAGATGGGAGCC TCATGCATTGGGCTGCCGTTTAAAAAGGAATTACTCTGTTCAAGCCTCCTAATCATCATAGTGTGGCCATGTAATACTTATGCTGTTATGCATTGAAGTG AGTAATGTAATTTTCTTAGTATAAGTTGGGGTGAAACCATTTGATAAGTAGAATTAGTAGTTATGTTTTCATCCTACTGGAGAAGTCGGTATTTGGTCAT AATTAACCCATACTAATTTGCCAGAGTCATGGTGTTTCAAGTTTGAATTGGGAATTTCTTACAATTCTTTCGATCCATGTATATAACCCTGTCAAGTGGG AAAAGACTTTTGCTGTTGTTGCATCTTGGTTCATATATGTGGTTTGCTCTACTTTTATTAGGTCATTTTTAAGATGGTAGAGGAAAATCCTAGAGATGTT GGGCATGAAATGGATGGGCTCAGTATTGTGTATGGAGATGAATCTCTTCCCCGTCTTTATGAAAATTCTCGAATTTCCTCTGAACAACTTCCTTCGCAGC AAGGTATAGTGAGGCGAGCTGTTGCTCTAGGCCGATATCTCCAGAACCCATTGGCAATGGTTGCAACCTTATGTGGACCCAGAAGGGAAATTTTATCCTG GAAACTGAGCTCTTTAGAGAGCTTTCTCAACCCAGATGATAAGTTTGGGATGATTGATCAGGTTATGGTAGATGTGACCAATCAGGTTGGCCTAGACATC AATTTAGCAATAAGTCATGAGTGGTTATTTTCTCCTTTAAAATTTATTTCTGGGCTTGGTCCACGTAAGGCTGCATCCTTACAGAGATCCTTGGTTAGAG CTGGGGCAATTTTTACCAGGAAGGACTTTTTGAAAGAACACAAACTTCAGAAGAAGGTTTTTGTCAATGCTGTTGGTTTCTTGCGTATCCGGCGAAGTGG GTTGGCTGCTAGCAGCAGCGAATACATTGATTTGCTGGATGATACAAGAATTCATCCAGAATCGTATGCTGTTGCACAAGAGTTGGCCAAAGATGTGTAT GACGAGGATGGCACAGGTGATGCAAACGATGATGATGATGCATTGGATTTGGCCATAGAGCATGTCAGAGAACGACCTAGTTATTTGAAAAACCTTGATG TTGTGGAATATGCTACTGCGAAAGAAGAGCAAAAAAAGAAACAACAATCAAGCCTTGTTAACCTTCTAAAGAAAATAGAAACTTTGTATGACGTAAAAAA TGAATTGATTCAAGGTTTTCAGGATTGTCGTAAGCAATATGAAGAACCAAGTCAGAATGAGGAATTCTATATGATTTCAGGTGAGACTGAGGAGACCCTT GCTGAAGGTAAAATTGTCCAAGCCACAGTTCGCAGAGTGCAGGCCCAGAAAGCAATATGTGGGCTTGACTCTGGAATGACTGGAATCCTGATGAAAGAAG ACTATTCAGATGAATATAGAGATATAATTGAATTATCTGATAGGCTACATGAAGGCGACATGCTCACTTGTAAAGTCAAGTCAATTCAGAAAAATAGGTA TCAAGTCTTCCTTGTTTGTAAGGATAGTGAAATGAGAAGTAACCGGCTACATAATAGCCGTGATCTTGACCCTTATTACTATGAAGGTCGAACCTGTTTG CAGAGTGAACAAGATAAAGCTCGGAAAGAAAAAGAGCTTGCAAAGAAGCATTTCAAGTCAAGGATGATTATTCATCCCCGCTTTCAGAACATAACTGCAG ATGAAGCAATGGAGTTTTTATCAGGCAAAGATCTTGGGGATAGCATTGTCCGCCCTAGCTCACGTGGACCAGAGTGTCTTACTTTAACTCTCAAAATCCA TGATGGGGTATATGCACACAAGGAAATTGTCGAAGGTGGAAAGGAACGCAAGGACATTACTAGCTTACTTCGAATTGGGAAGACGCTAAAAATTGGAGAT GACACTTTCGAGGATTTAGATGAGGTTATGGACCGTTATGTTGATCCCTTGGTGACTCACTTGAAGGAAATGTTAAACTATCGCAAGTTTAGAAGGGGTA CAAAATCTGAAATAGATGAACTTTTGAGGATAGAAAAAGTTGAAAATCCTCTGCGCATAGTCTACAGTTTTGGCATCTTGCATGAACATCCCGGGACATT TATACTAACTTATATAAGAAGTACGAATCCACACCATGAGTATATTGGGCTTCATCCAAAGGGATTCAGGTTCCGAAAAAAGATGTTTGAGGACATTGAT AGGCTTGTGGCTTATTTTCAGAGGCATATTGATGATCCTCAACATGATTCCACTCCCTCCCTTAGATCTGTTGCTGCTATGGTACCAATGCGAAGTCCTG CAGCTGGTGGCTCATCAAGGGCATCTGGGGGTAGTGGCTGGGGTAGTTCAAACAACGAAGGTGGCCGGAGAGGCGACTCTTATGCTAGGGATCGATCTTC TACTCCTGGTTCCAGGACAGGACGGTCTGATTACAGAAACAATGGGAATCTAGATGAACACCCCAGTGGACTGCCTCGTCCATATGGTGGTGGACGTGGC CGTGACCGTGGTTCTTATAACAATGATAGCAGAGGACATGGCTCCAATAATGAAAGAGAGGGCAGAAGGGTTTCTAATACAAGGGATGGGGC
• Tissue: pods
• Gene name: LI_gene_194479;
• Additional information: details;

Expression of Ll_transcript_462832

FPKM

• PAB: 0.8
• PNAB: 3.7
• PS1: 4.3
• PS2: 2.1
• PS3: 4
• PW1: 2.5
• PW2: 2.8
• PW3: 2.3

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_462832

• Blastp: Transcription elongation factor SPT6 homolog from Arabidopsis with 61.2% of identity
• Blastx: Transcription elongation factor SPT6 homolog from Arabidopsis with 73.37% of identity
• Eggnog: domain protein(COG2183)
• Kegg: Link to kegg annotations (AT1G65440)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019447115.1)
• Pfam: Acidic N-terminal SPT6 (PF14632.5)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;