Ll_transcript_462819

• Id Trinity: TRINITY_DN52657_c0_g3_i2
• Name Transcript: Ll_transcript_462819
• Sequence: GTTCGTGCGCGGTACTCTCACAATGCAAAATCTTTCTCCTTCACTTAGAAACTCTCAACTCCCTATTCCTTCGTTTTATTGCATTCTCTGATTCGCACTG TGATTATTCTCTCTCTCTCTCTCTCACTCTTTCTGTCGTTTTTTCAATCCTTTTGCGTTTCGTAACTGTTCCCATTCATGGCCAAGGGCGTAATCTCAGA CGACGAAGATGAGGTTGAACTCGACGAGGAGGAGAGGGAACCGGTCGAGGGGGATGGATTAGATGAGGGTCGCGATGTGGACGATGATGAAGATGAAGAA GAAGAAGGGCAGGATGAATATGAAAATGATGGATTTATAGTTGATGAGGATGAAGAGGAGCAGGATGAAGAAGAGAGAGCAGAAAGTGATGAAGAACGCC ACAAGAGGAGAAAGAAGAAGAGAAAGGAGGAATATATTCTTGATGAAGATGATTATGAGCTTCTGGAAGACAATAACATCAATATTCATCGTCGGAAGGA CATTAAAAAGTTCAAGCGACTGAAAAAAGGCCAGAGGGATACTGAGGAGGAACCATCTGGGCTATCTGATGAGGAGGATTTTGTTGGAAGTGGTAAAGTT GGGCGAACTGCTGAGGAGAAGCTTAAACACCGTTTATTTGGTGATGAAGAAGCTTTACTTGAGGATATTGTTGAAGAGGAGGAACAAGGAGAAGAGGAGG AGGATGCAGACATTGGAGAAGATGATGAAATGGCCGACTTCATTGTGGATGAAGAAGAAATTGATGAGAATGGAGCTGCTATGAGGCGAAGGAAGCCGAA GAGAAAGAAAACTAGGCAGGCACCTGGAGTCTCTTCCTCAGCTGTGCAAGAAGCTCAAGATTTATTTGGTGATGTTGAAGAGTTGCTGCAGACTCGCAAG AAAAATCTAGAGCTACATGAATATAGAGAGACTAGACTTGAAGATGAATTTGAGCCTATTATTATTTCTGAGAAGTATATGACAGAGAAGGATGACGTGA TTAGGGAGGTTGATCTTCCAGAGAGAATGCAGATATCTGAGGAGAGTACTGGTACTCCTCCACTGGATGGAAGTATAGATGAAGAGAGCCGGTGGATAGT TAAGCAACTTAGTGATGGAGCAGTCCCTTGGATTTGCAAAAAAATTTCTACGCCCCAAAATAATAGAAAGAACCTACCAATTGACGAGAATGATATTATC AGATTTTTGGAACTGTATCATGTGCAAAAATTAGATATTCCTTTTATTGCTATGTATCGGAAGGAGGAGTGCTTAAGCCTATTGAAAGACCTAGAGCGAC ATGAAGCTAGTGATGAGAATTCTGATAAGAATAACATGACACCTGCTCTAAAGTGGCACAAGGTACTTTGGGCTCTTCAGGACTTAGACAGGAAGTGGTT GCTCCTTCAGAAGCGGAAGAGTGCCTTAGAATCATACTATAGTAAACGGTTTGAAGAAGAGTCCCGACGTATTTATGATGAAACAAGACTAAACTTGAAC CAGAAATTATTTGAATCAGTAATGAGATCATTGAAGGAGGCAGAATCTGAGAGGGAGGTTGATGATGTAGACTCCAAGTTCAACTTGCATTTCCCACCAG GTGAAGCCGGTGTTGATGAAGGACAATACAAGAGACCAAAAAGGAAGTCCATATACAGCACTTACAGTAAGACAGGTCTGTGGGAGGTTGCGAACAGGTT TGGGTGTAGTTCTGAGCATCTTGGAATATGTCTATCTGAAGTTAAGGTGCCTGAGTTGGTAGATCCAAAGGAAACACCAGAGGAGATGGCTTCAAACTTT ACATGTGCTATGTATAATACCCCTGAAGAAGTACTTAAATGTGCTAGGCACATGGCAGCTATTGAGATAAGTTGTGAGCCTAGCATTAGGAAACATGTTC GTAGCCACTTTCTTGACAATGCTCTGGTGTCAACTTGTCCTACTGCCAGTGGAAATGTGGCAATTGATTCTTTTCATGACTTTGCTGGGGTAAAATGGCT GCGAGAGAAGCCTTTGTCTAAATTTGATGATGCACAGTGGCTCCTCATACAGAAGGCAGAAGAGGAGAAACTTCTTCAAGTCACTATTAAGCTTCCTGAA GAGAATCTTAATAAATTGTTAGATCAATTCAATGAGTATTATGTTAGTGACAGTGTTAGCAGATCTGCTCAACTGTGGAATGAACAGAGGAAGTCCATAC TGCATGAGGCCATTTTTCGACTTGTTCTACCTTCAATGGAAAAAGAGGCAAGAGGAATCTTGGCAAGCAAAGCAAAGAATTGGCTACTTATGGAGTATGG GAGGGCCTTGTGGAATAAGGTTTCTGTCGGACCTTATCAACAGAAGGAGAATGATCTTAACTCTGGTGATGAGGCTGCTCCTAGGGTTATGGCATGCTGT TGGGGCCCCGGAAAGCCACAAACAACTTTTGTTATGTTAGATTCATCAGGGGAAGTGCTAGATGTGCTTTACACTGGATCCCTTACTTTAAGGTCGCAGA ATGCTAGTGACCAACAACGGAAGAAGAATGACCAGGACCGTGTGTTGAAGTTTATGACAGATCACCAACCACATGTTGTCGTTTTAGGTGCAGTAAATTT GTCTTGCACTCGTTTAAAGGAAGATATATATGAGGTCAGAATTTGGTTTTTATGCATGCGTCATTATTTTGGTTCCATTCCATTCCATTCAACCAATCAT GCACCCAATGGTTTGTTTTATATATGTACAAATTTTCTCAAATAAGCAATTACTCTGGGCACATATAACTACCCTCCTCAGGCCCCATTAGATGGGAGCC TCATGCATTGGGCTGCCGTTTAAAAAGGAATTACTCTGTTCAAGCCTCCTAATCATCATAGTGTGGCCATGTAATACTTATGCTGTTATGCATTGAAGTG AGTAATGTAATTTTCTTAGTATAAGTTGGGGTGAAACCATTTGATAAGTAGAATTAGTAGTTATGTTTTCATCCTACTGGAGAAGTCGGTATTTGGTCAT AATTAACCCATACTAATTTGCCAGAGTCATGGTGTTTCAAGTTTGAATTGGGAATTTCTTACAATTCTTTCGATCCATGTATATAACCCTGTCAAGTGGG AAAAGACTTTTGCTGTTGTTGCATCTTGGTTCATATATGTGGTTTGCTCTACTTTTATTAGGTCATTTTTAAGATGGTAGAGGAAAATCCTAGAGATGTT GGGCATGAAATGGATGGGCTCAGTATTGTGTATGGAGATGAATCTCTTCCCCGTCTTTATGAAAATTCTCGAATTTCCTCTGAACAACTTCCTTCGCAGC AAGGTATAGTGAGGCGAGCTGTTGCTCTAGGCCGATATCTCCAGAACCCATTGGCAATGGTTGCAACCTTATGTGGACCCAGAAGGGAAATTTTATCCTG GAAACTGAGCTCTTTAGAGAGCTTTCTCAACCCAGATGATAAGTTTGGGATGATTGATCAGGTTATGGTAGATGTGACCAATCAGGTTGGCCTAGACATC AATTTAGCAATAAGTCATGAGTGGTTATTTTCTCCTTTAAAATTTATTTCTGGGCTTGGTCCACGTAAGGCTGCATCCTTACAGAGATCCTTGGTTAGAG CTGGGGCAATTTTTACCAGGAAGGACTTTTTGAAAGAACACAAACTTCAGAAGAAGGTTTTTGTCAATGCTGTTGGTTTCTTGCGTATCCGGCGAAGTGG GTTGGCTGCTAGCAGCAGCGAATACATTGATTTGCTGGATGATACAAGAATTCATCCAGAATCGTATGCTGTTGCACAAGAGTTGGCCAAAGATGTGTAT GACGAGGATGGCACAGGTGATGCAAACGATGATGATGATGCATTGGATTTGGCCATAGAGCATGTCAGAGAACGACCTAGTTATTTGAAAAACCTTGATG TTGTGGAATATGCTACTGCGAAAGAAGAGCAAAAAAAGAAACAACAATCAAGCCTTGTTAACCTTCTAAAGAAAATAGAAACTTTGTATGACGTAAAAAA TGAATTGATTCAAGGTTTTCAGGATTGTCGTAAGCAATATGAAGAACCAAGTCAGAATGAGGAATTCTATATGATTTCAGGTGAGACTGAGGAGACCCTT GCTGAAGGTAAAATTGTCCAAGCCACAGTTCGCAGAGTGCAGGCCCAGAAAGCAATATGTGGGCTTGACTCTGGAATGACTGGAATCCTGATGAAAGAAG ACTATTCAGATGAATATAGAGATATAATTGAATTATCTGATAGGCTACATGAAGGCGACATGCTCACATGTAAAATCAAGTCAATTCAAAAAAATAGGTA TCAAGTCTTCCTCATTTGTAAGGATAGTGAAATGAGAAGTAATCGGCTACAGAACAGCCATGATTTTGATCCCTATTACCATGAAGATATACGTTGTTTG CAGAGTGAACATGACAAAGCCCGGAAACAAAAAGAGCTTGCAAAGAAGCGTTTCAAGTCAAGGATGATAATTCATCCCCGCTTTCAGAACATAACTGCAG ATGAAGCAATTGAGTTATTGTCTAACAAAGAACCTGGAGAAAGCATTATCCGTCCTAGCTCACGGGGGCCAGAGTGTCTTACTCTAACTCTCAAAATTCA TGATGGGGTATATGCACACAAGGAAATAGTTGAAGGCGGAAAGGAGCGCAGGGATATTACAAGCTTACTTCAAATTGGGAAGACACTGAAAATTGGAGAT GACACGTTCGAGGATTTAGATGAGGTTATGGACCGTTATGTTGATCCCCTTGTGACTCACTTGAAGGCAATGTTAAATTATCGCAAGTTCAGAAGGGGCA CAAAAACAGAAATTGATGAACTTTTAAGGATAGAAAAAGCTGAGAATCCTATGCGCATAGTCTACAGTTTTGGCATCTTGCATGAACATCCTGGCACATT TATATTAACTTATATAAGAAGTACAAATCCACACCATGAGTATATTGGGCTTCATCCCAAAGGGTTCAGGTTCAGGAAAAAGATGTTTGAGGACATCGAT CGGCTCGTGGCTTATTTTCAGAGGCATATTGATGATTCCCAACATGATTCAACCCCCTCCATTAGATCTGTTGCTGCTATGGTACCAATGCGAAGTCCTG CAGCTGGTGGCTCATCAGGGGCATCTGGGGGTGGCGGCTGGGGTGGTTCACACAGTGAAGGTGGTCGGAGAGGTCATTCTTATGATAGGGATCGATCTTC TACTCCTGGTTCCAGGACAGGACGGGCTGATTATAGAAACAATGGTAATCGAGATGAACACCCCAGTGGGTTGCCCCGTCCATATGGTGGTGGTCGTGGC CGTGCTCGAGGTTCTTATAATGACAACAGAGGACATGGCTCCAATAATGAAAGGCAGGACTCTGGCTATGTTGGGAGCAGATGGGGTTCTAATACACGCG AGGGGGGTGACGGTTTAAGCAATTTTCCAGGAGCTAAGGTTCAAAATTCCCCTGGAAGGGAAGCTTTTCCTGGTGGTTGGGGTGGTGGAGCTGGTTCAGG TGATGCTGAACATGGAAGCTCTGGGTCGGGAACTGGCTCCAAGAAAGCATCCGACAATGGGTGGGGGTCTGCAATTGCCGGCGCTGGCTCTGGTTGGTGA ACTCTTGAGAACCCAGTTTAACTGACCGGCAGGCAGGCTACTTATGCCATTCATTTTCTTCTTTAGTGCCTGCTTTCACATTGATTATTTAGTTGTAAAT AGATTTGACCTTAGAACAAATGTACTTTGAATGTTCCTCTGAACGTTTTTGTTTTTGCCTGATATGAAGGGTAGGAGAGTTTTATTAAACCTAAGGGATT TTCAAATGTGGTTAAATGATGCTGACAGTGTTTATTTATGGATTGCGTGGTATGAAAATATTTACCTCTTTCTCCATTCATTTCTACGATTGTTGTTCAT GTTCTTGGATTATATTACTTTTTTTCTTCATAAAAAA
• Tissue: pods
• Gene name: LI_gene_194479;
• Additional information: details;

Expression of Ll_transcript_462819

FPKM

• PAB: 4.5
• PNAB: 11
• PS1: 16.4
• PS2: 9.7
• PS3: 14.7
• PW1: 10.8
• PW2: 11.2
• PW3: 11.5

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_462819

• Blastp: Transcription elongation factor SPT6 homolog from Arabidopsis with 61.2% of identity
• Blastx: Transcription elongation factor SPT6 homolog from Arabidopsis with 73.22% of identity
• Eggnog: domain protein(COG2183)
• Kegg: Link to kegg annotations (AT1G65440)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019458019.1)
• Pfam: Acidic N-terminal SPT6 (PF14632.5)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;