Ll_transcript_462823

• Id Trinity: TRINITY_DN52657_c0_g3_i6
• Name Transcript: Ll_transcript_462823
• Sequence: GTTCGTGCGCGGTACTCTCACAATGCAAAATCTTTCTCCTTCACTTAGAAACTCTCAACTCCCTATTCCTTCGTTTTATTGCATTCTCTGATTCGCACTG TGATTATTCTCTCTCTCTCTCTCTCACTCTTTCTGTCGTTTTTTCAATCCTTTTGCGTTTCGTAACTGTTCCCATTCATGGCCAAGGGCGTAATCTCAGA CGACGAAGATGAGGTTGAACTCGACGAGGAGGAGAGGGAACCGGTCGAGGGGGATGGATTAGATGAGGGTCGCGATGTGGACGATGATGAAGATGAAGAA GAAGAAGGGCAGGATGAATATGAAAATGATGGATTTATAGTTGATGAGGATGAAGAGGAGCAGGATGAAGAAGAGAGAGCAGAAAGTGACGAGGAACGCC AGAAGAGGAGAAAGAAGAAGAGAAAGGAGGAATATGTCCTTGATGAAGATGATTATGAGCTGCTGGAAGACAATAACATCAATATTCATCGTCGGAAGGA CATTAAAAAGTTCAAGCGACTGAAAAAAGGCCAGAGGGATACTGAGGAGGAGCCGTCTGGGCTATCTGATGAGGAGGATTTTGTTGGAAGTGGTAAAGTT GGGCGAACTGCTGAGGAGAAGCTTAAACACCGTTTATTTGGCGATGATGAAGGAGCTCCACTTGAGGATATTGCTGAAGATGAGGAACAAGGAGAGGAGG AGGAGGAGGATGCAGACATTGGAGAAGATGATGAAATGGCCGACTTCATTGTGGATGAAGAAGAAGTTGATGAGAATGGAGCTCCCATGAGACGAACAAA GCCGAAGAAAAAAATTAGGCAGGCACCTGGAGTCTCTTCCTCAGCTGTTCAAGAAGCTCAAGATATATTCGGTGATGTTGACAACTTTCTGCTGACTCGC AAGAAAAATCTGGAGTCAAATGAATATAGAGAGACTAGACTTGAAGATGAATTTGAGCCGATTATTCTTTCTGAGAAGTATATGAGAGAGGAGGATGACC AGATTAGGGAAGTTGATCTTCCAGAGAGAATGCAGATATCGGAGATGAGTACTGGTACTCCTCCACTGGATGGAAGTATAGATGAAGAGAGCCGGTGGAT AGTTAAGCAACTTAGTGATGGAGCAGTCCCTTGGATTTGCAAAAAAAATCCAACCTCCCAAAATAATAGAAAGAACCTACCAATTGACGAGAATGATATT ATCAGATTTTTGGAACTGTATCATGTGCAAAAATTAGATGTCAGTATCACCTGATCTGTGAGATTTACCTCTTTAGTTAGTTATCTTTATTTTCCTAATG TCCTAATATGAAAATTTTCCTCTTCAAGATTCCTTTTATTGCTATGTATCGGAAGGAAGAGTGCTTAAGCCTGTTGAAAGACCTAGAGCGACCCGAAGCT GGAGGTGAGAGTTCGGATAAGAATAACATGACACCTACTCTAAAGTGGCACAAGGTGCTTTGGGCTCTTCTGGACTTGGACAGAAAGTGGTTGCTTCTTC AGAAGCGGAAGGGTGCCTTAGAGTCATACTATACTAAACGGTTTGAAGAGGAGTCCCGGCGTATTTATGATGAAACAAGACTAAACTTGAACCGGCAATT ATTTGAATCAGTTATGAGATCATTGAAGGATGCAGAATCTGAGAGGGAGGTCGATGATGTTGACTCCAAGTTCAACTTGCATTTCCCACCAGGTGAGGCT GGTGTTGATGAAGGACAGTACAAGAGGCCAAAAAGGAAGTCAGTATATAGCACTTACTGTAAGGCAGGCCTGTGGGAGGTTGCGAACAGGTTTGGATGTA GTTCTGAGCAGCTTGGAATATGTCTATCTGAAGTTAAGGTGCCTGAGTTGGTAGACCCAAAGGAAACACCAGAGGAGATGGCTTCAAACTTTACATGTGC TATGTATAATACCCCTGAAGAAGTACTTAAATGTGCTAGGCACATGGCAGCTATTGAGGTAAGTTGCGAGCCTAGCATTAGGAAACATGTTCGTAGCCAC TTTCTTGATCATGCTGTGGTGTCAACATGTCCTACTGCTGATGGGAATGTGGCAATAGATTCTTTTCATGACTTCGCTGTGGTAAAGTGGCTCCGAGAGA AGCCTCTGTCTAAATTTGACGATGCACAGTGGCTTCTTATACAGAAGGCAGAAGAGGAGAAACTTCTTCAAGTCACTATTAAGCTTCCTGAAGAGAATCT TAATAAATTAATTGACCAATTCAATGAGTATTATGTTAGCGATAGTGTTAGCAGATCTGCTCAGCTGTGGAATGAACAGAGGAAGTTGATACTGAAAGAT GCAATTTTTCGCCTTCTTTTACCATCAATGGACAAAGAGGCAAGAGGTGTATTGGCAAGCAAAGCAAAGAATTGGCTACTTATGGAGTACGGGAATGCCT TGTGGAATAAGGTTTCTGTGGGACCTTATCAACAGAAGGAGAATGATCTTAGCTCTGATGATGAGGCTGCTCCTAGGGTTATGGCCTGCTGTTGGGGCCC TGGAAAGCCGCAAACAACATTTGTTATGTTGGATTCATCAGGGGAAGTGCTAGATGTGCTTTACACTGGATCCCTTACTTTAAGGTCACAGAATCCTAGT GACCAACAACGGAAGAAAAATGACCAGGAACGTGTTTTGAAGTTTATGACAGATCACCAACCACATGTTGTTGTTTTAGGTGCAGTAAATTTGTCTTGCA CTCGTTTAAAGGAAGATCTATATGAGGTCATTTTTAAGATGGTAGAGGAAAACCCTAGGGATGTTGGGCATGAAATGGACGGGCTCAGCGTTGTGTATGG AGATGAATCTCTTCCCCGTCTTTATGAAAATTCTCGAATTTCCTCTGAACAACTTCCTTCCCAGCAAGGTATAGTCAGGCGGGCTGCTGCTCTTGGCCGA TATCTCCAGAACCCACTGGCAATGGTTGCAACCTTATGTGGACCCAGAAGGGAAATATTATCATGGAAACTGAACTCTTTGGAGAGCTTTCTCAACCCAG ATGATAAATTTGGAATGGTTGAGCAGGTTATGGTAGATGTGACCAATCAGGTTGGTTTAGACATTAATTTAGCAATAAGTCACGAGTGGTTATTTTCTCC TTTACAATTTATTTCTGGGCTTGGTCCACGTAAGGCTGCATCCTTACAGAGATCCTTGGTAAGAGCTGGTGCAATTTTTACCAGGAAGGATTTTTTGAAA AAACATAAGCTGGAGAAAAAGGTTTTTGTCAATGCAGTTGGTTTCTTGCGTATCCGGCGAAGTGGGTTGGCTGCTAGCAGCAGTGAATATATTGATTTGC TGGATGATACAAGAATTCATCCAGAATCATATGTTATTGCACAAGAGTTGGCCAAAGATGTGTATGAGGAGGATGGCACAGGTGATGGAAATGATGATGA TGATGCATTGGATTTGGCAATAGAGCATGTTAGAGAAAGACCTAGTTATTTGAAAAACCTTGATGTTGTGGAATATGCTACTGCGAAAGAAGAACAAAAA AAGAAACAACCGTCAATTGTTATTAATCTTCTGAAGAAAATAGAAACTTTGCATGACATTAAGAGTGAATTGATTCAAGGTTTTCAGGATTGTCGTAAGC AATATGAAGAACCAAG
• Tissue: pods
• Gene name: LI_gene_194479;
• Additional information: details;

Expression of Ll_transcript_462823

FPKM

• PAB: 0.1
• PNAB: 0.8
• PS1: 0.3
• PS2: 0.3
• PS3: 1
• PW1: 0.6
• PW2: 0.6
• PW3: 0.4

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_462823

• Blastp: Transcription elongation factor SPT6 homolog from Arabidopsis with 71.24% of identity
• Blastx: Transcription elongation factor SPT6 homolog from Arabidopsis with 71.11% of identity
• Eggnog: domain protein(COG2183)
• Kegg: Link to kegg annotations (AT1G65440)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019458019.1)
• Pfam: Holliday-junction resolvase-like of SPT6 (PF14639.5)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;