Ll_transcript_464493

• Id Trinity: TRINITY_DN52661_c1_g1_i5
• Name Transcript: Ll_transcript_464493
• Sequence: GAATATTTTTCGGAGATTGTCCCGTGGTTTTTCCCTTGGCATTTAAGGGTTTTCCACATTAAAATTTGGTGTCCATTTTTTCTCTACTTTCCACAATTTA TTTCTGTTGCGTTGCTAAGATTGTAGATATATTTTACCGGATCTACTTTGGTGTTCATTGCTATATCACAATACAATTTAATTTAAACCGTGAATCTATC TCAGAGCCCAACACGTGATATCAAAGCTCCAAGTTGAGCTATGGGGGTTGTCCTTTAAATTAAATGGAGGAGACTACATGCACCATGATCAAATTGACAG CCATCAATTATTCCATTTGGAAGCAAAAAATGGAGGATATACTTTTCTGCAGGGATCTATATGATCCTGTAGAGAACGGAGATGCAAAGCCGGTCGACAT GACATCGAAAGAATGGAAAAAGATGCACCGAAGGCCATTGGAATTATCAGACAGTTGGTGGATATTAGTGTGTTCCACCATGTGGCCACAGAGTCGAATG CCCTGACTCTGTGGAAGAATTTACAGAATCTTTATGAGAGGAAGACTGCACAAAACAAAGCTTTCGCAATTAGGAAGCTTGTGAACCTGGAATACAAAGA GGGAAGATCTGTCGCTGAGCACTTGAGTGACTTTCAAGATTTGGTAAATCGGTTGATTACCATGAAGCTAGTGTTGGAAGATGAGTTACAAGCACTATTA TTTTTGAGTTCTTTGCCGAATAGCTGGGAGACATTGATGGTGTCGTTAAGCAACTCAACATCAGATGGACAACTATCGCTATCACAAGTCAAAGATAGCA TGTTCAATGAAGAAGCAAGGAGGAAAGACTTGGGGACAAATAACTCCCAAGCCCTTGTCACAGAAAATAGGGGAAGGAGCAAGAGTAGAAGTCGACCCTA CAAATTTAAAGATAGATCTAAGTCCCAATTTATAAGAAAGTTCAAATGTTATCATTGCGGTGAAGAAGGACACATCAAAAGGAATTGTAAAGATTGAAAG AACAGAGATAAGAAATATCAAAGAAATATGGCGAATGATGCCCCTGTGATAGATGGGGAAGTGGTGTTGCTCTCTTCTGGAGATGAAGAGTGTCACATTG CAGATTCATGTGAAGAATGGATCGTTGACTCACCGCATCGTATCATGCCACTCCTAACAAGGAACTCTTTACAATTTACAAAGCTGGAGACTTTGGCAAA GTAAGGAGGGATAATAGCAGCAATGCAAACATTGTGGGAGTAGGTGATGTGTGCTTGCAGACTAATGTCGGATGCACATTGATATTGAAGGACGTGCAAC ATGTGCCAGATCTTCGCCTAAATTTGATTTCTGCACACGCTCTGGACCGAGCTGGATACCATAACAACTTTGGTGATGGAAAATGGAGTTATTGATCGAG GGATGGTGTACAACACCTTATACAAAACTCAAGTCAAGCAGATCGGAGATGGATTGAATGTAGTCGAAGATGATGCTTCACCAAATTTGTGGCACAAAAG GCTGGCTCATATGAGTGAAAAAGGATTGCAGATTTTGGCAAGGAAATCTCTCATTCCTTATGTTAAAGGTACAAAGTTAAATCCTTGTGATAACTGCTTA TTTGGAAAGCATTATAGAGTTTCTTTCAGCAAAACTTTGAAGCAGAAGCAAAATATTTCGGATATGGTTTACTCTGATGTCTGTGGTCCCATTGAGGTGG AGACTCTGGGTGGTAGCAAATATTTTGTGACGTTTATTGATGATGCTTCACTGAAAGTGTGGGTGTATTTTCTAAGGATTAAAGACCATGTGTTTCAATA CTTCAAAAGATTTCATGCCATGGTGGAGAGGCAAACATGGAAATCTTTGAAATGTCTTTGCAGTGATAATGGGGGTGAGTATACATCCCATGAATTCAAG AATTATTGTTCTGAGCATGGAATCATACATGAGAAGACGGTTCCTGGTACCCCCAACATAATGGTGTGGCCGAAAGAATCAATAGAACCATTATGGAAAA AGTAAGAAGTATGTTGAGAATGGCTAAACTGTCTAAGCCATTCTGGGGTGAATCTGTTCAAACCGCGTGCTACCTGATTAACAGATCTCCTTCTGTTCCC TTGGGCTTTGACATTCCTGAGAGAGTATGGTATGGAGATGATATTAAATACTCTTATTTGAAGGTGGTTGGATGTAAAGTCTTTGCTCATGTAAGTAAGA AGCAGAAACAAAAACTTGATGATAGAGCCACTCCTTGCATTTTTCTGGGCTATGGAGATGAGGAATTTGGCTACAGGTTATGGGATCCAGAAAATAAGAG AGTCATTAGAAGTAGAGATGTGGTGTTCCATGAGCAAGAAACTATGTCAGATTCTGCGACTCCATAGAAAACCAAGAAACCTGGTGGTAATGTTGATTTT ACACTAGTCTCTCTTCCTAGAGAGAATGCCATAGGAGGAGGAGAGTTAAATGACCATGGGGTTGATGATGAGCGAGAACCATATGATGTTGGAGAAGAAT GTGTTAACCAGGGGGAGCAAACCCCTACACCGCAACTTAGGAGAAGTGATAGAGAGCGACTTCCGTCCAACAGATACCCCAGTTCGGAGTATATCCTTCT CACTGATGAGTGAGAGCCAAAAAGTTTAGATGAAGTTTATACTCATAAGGATAAATTTGAATGGATGAAAGCCATGCAAGAAGAGATGGATTCCTTGCGG AAGAATGATACTTATGAGCTCGTGGAACTTCCTAAAGGCAAGAAAGCCTTGAAGAACAAATGGGTGTTCAGACTAAAGAAAGATGGTGATCAGCTAGTCA AATATAATGCTCGTTTAGTCGTGAAAGGTTTTGGACAAAAGCGAGGAGTAGATTTTGATGAGATTTTTTCTCCTGTTGTCAAAATGAGTTCTATTCAAGT CATGCTCGGATTGACAGCTAGCTTGTATCTAGAGCTTGAGCAGTTAGATGTGAAGACTGCATTTCTCCATGGAGATTTGGAGGAAACGATCTACATGGAT CAACCTGAAGGATTTGAAGAATCTGGAAAGGAGAACATGGTTTGCAGATTGAAGAAGAGTCTGTATGGATTAAAACAGGCTCGTAGACAATGGTACAAGA AGTTTGACTCGTTCATGACGAGTCATGGATATACCAGGACTGATGCATATCATTGTGTATATGTTAAAACATTTCCAGGAGACAAGTTCATTATCCTTTT GTTATATGTAGATGATATGCTGATAGTGAGACATGATGGAAAGATGATTGGCGAGTTGAAGAAGGAATTATCAAAGTCTTTTGATATGAAGAATCTAGAC CCCGCAAAGCAAATTCTGGGCATGCAGATTTTGCGAGACCGAAAGGCTAAGAAGTTATGGTTGTCACAAGAACGATATGTGGAACGGGTTCTAGAGAGGT TCAACATGAAGAATGCTAAACCAGTTAGCATACTATTGGCCAATCACTTTAACCTTAGTAAAAGAAGTTGCCCCACTAGTTCGAAAGAGAAGAATGACAT GGCAAATATTCCATACTCCTCTGCAGTTGGGAGTTTGATGTATGCCATGGTTTGTACTCGTCCAGATATCGCTCACGCGATTGGATTTGTTAGCAGGTTC CTTTCAAATCCAGGCAAAAATCATTGGGAAGCGGTAAAGTGGATTCTGAGATACTTGAGAGGTAGCCCTAAAATGTGTTTGTGCTTTGAAGGACCATAAA TAATCCTGGAAGGCTATGCAGATGCAGATATGGCAGGTGATATTGATGGTAGGAAATCTACATCAGGGTTTGTATTTACTTTTGCAGGGGATCTGTGTCA TGGCAGTCAAAGTTGCAGAAGGGTGTTGCCTTATCTGCAACTGAAGCAAAATTCATCGCCATGACTGAAGCAAGTAAAGAAATGCTTTGGTTGAAGAGGT TTCTTCAACAGTTCGGAATGAAGCATGAAAGGTCTGTGATCCATTGCGATAATCAAAGTGCTTTGGATCTAAGCAAGAATGCGATGTACCACTCTCGTAC AAAGCATATTGATGTTAGATATCATTGGTTACGCCAAGCAGTCGAGGAACAACAGTTCATGCTGGAGAAGATCCAAACACTGAAAAATCATGCTGACATG ATGACAAAAGTTATAGCACGTGAAAAGCTTCAACTTTGTGCCAAGCTGATTGGCTTGGATCCTAGATGAATATTCCAAATTTATCCCCGTCGGCTGAAGG GGGAGAATTGTGGGGTCCAACCTCATGCATTTGTCAAAGAAAGCAAGCAATGCATTTATTGCTCGGAAGGAAATATGTTTGGACGGTGCAGACCTATAAT TAGGCCAGTAGGAAAACTATCCTAAAATTGTAGAGATTTCATACTGGAGAAAGCCTCTATAAATAGAGGAATGCTTATTCAGTTGAAGCAGAGTGAAAAA GAGAAAACAGTGAGCAAGAAGTGCAAAGCTGATAACGCAGAAGCAAAGTTAGCTTCTGGTGGTGAGTGAAATAGAGAGTATGAGTAAATCCTAAAGAGTG TAGTGTGTGAAAAATATCCCGGGTTAATTTTGAGTTTCATCT
• Tissue: pods
• Gene name: LI_gene_194511;
• Additional information: details;

Expression of Ll_transcript_464493

FPKM

• PAB: 0
• PNAB: 1.2
• PS1: 3.3
• PS2: 0.4
• PS3: 1.8
• PW1: 0.7
• PW2: 0.2
• PW3: 0.2

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_464493

• Blastp: Retrovirus-related Pol polyprotein from transposon TNT 1-94 from Nicotiana with 73.55% of identity
• Blastx: Retrovirus-related Pol polyprotein from transposon TNT 1-94 from Nicotiana with 65.65% of identity
• Eggnog: -
• Kegg: -
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_020987654.1)
• Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) (PF07727.13)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;