Ll_transcript_464632

• Id Trinity: TRINITY_DN52662_c2_g1_i1
• Name Transcript: Ll_transcript_464632
• Sequence: GCCACATCCTGACACAGACCAAGATGATCATGAGATTGATGATGATGATGATTTTGATGAAGTGATGGAGGAAGAGGACGAAGATGATGAGGAAGACGAG GATGGTGTTATACTGCGACTTGAGGAGGGCATAAATGGAATTAATGTTTTTGACCATATTGAGGTTTTTGGCAGAGATAATAGTTTTGCAAATGAAAATT TTCATGGGATGCCAATTGAAGTTTTTGGATCCAGACGTCCAGGGCGGACAACATCTATCTACAGTCTTTTGGGCAGAACTGGTGATACTGCCACACCTTC TCGCCATCCACTGTTAGTTGAACCTTCGTTTTCATTCCCCCCATCTACAGGGCAATCAGATAATGAACTGGAGAACAGCTCAATGGGATTGGATAGCATC TTTCGATCACTGCGGAGTGGACGCCATGGACATCGTATGAACTTGTGGACTGATATTAACCAGCAGAGTGGTGGGTCAAACACTGGTGTTGTACCACAAG GTCTTGAGGATTTGCTTGTCTCTCAATTAAGGCAACCAACCCCTGAAAAGTCATCCAACCAGAACGTAGCAGAAACAGTTCCTCATAGTAAAGTAGATGT CAGCCAGGCACAAGATTCAGGTGGCGCAAGACCAGAAGTCCCGGCTGAAAGTAATGCAAATCAGGAAGTCAGTACATCAACTCCTTCAATAATTGAGAAC AATAACAATGTGAGTATCAGCCCTGCTGGAACTGGACATCTGCAAACAGATGTGTCCAGCACTCACACACAGGCAGTTGCGGTGCAGTTGGAGCATAATG ATGGGGTTGTGAGGGATGTTGAAGCTGTGAGTCAGGAGAGTAGTGGTAGTGGGGCAACATTTGGTGAAAGCCTTCGGAGTCTAGACGTAGAGGTTGGAAG TGCTGATGGCCATGATGATGGTGGAGAAAGACAAGTTTCTGCAGAGAGGACAGCAGGTGATTTACAGGCTGCACGTACCAGAAGATCGAATATGCCTTTC GGTCATTCCTCTGCTGTAGTTGGAAGAGATGCATCTCTCCATAGTGTTACTGAAGTTTCTGAAAATTCAAGCCGAGATGCAGATCAAGATGGTCCAGCAG CAGAGCAGCAGGGGAACAGTGATTCTGGCTCAGGAGCAATTGACCCTACTTTTCTAGATGCTCTCCCCGAGGAGCTGCGTGCTGAAGTGCTCTCAGCTCA GCAAGCTCAAGTTGCTCAACCATCAAATACCGAGTCTCAAAACACTGGGGATATTGATCCAGAGTTCCTTGCAGCACTTCCTGCAGATATCCGAGCAGAA GTTCTAGCTCAACAGCAAGCACAGAGGTTGCATCAATCTCAAGAGTTGGAAGGTCAACCTGTAGAAATGGATACCGTCTCAATAATTGCAACATTTCCTT CAGATATACGAGAAGAGGTTCTGTTAACTTCATCTGATACTATCCTTGCCAATCTTACACCTGCTCTTGTCGCCGAGGCAAACATGTTGCGGGAGAGGTT TGCACACCGTTACAGTCGTAACAACTTATTTGGTCTGCGTCGTAGAGGTGAAGCTTCTAGACGTGGTGAAGGTATTCGTTCTGCCTTGGATGGAGCAAGG GGGGTTGTATATTCACGTAGGTCTAGTGGAGCTAAGGTTGTTGAAGCTGACGGAGCACCTCTCGTTGACACAGAAGCTTTGCATGCCATGATTCGATTGT TTCGGATAGTGCAGCCACTTTATAAAGGTCAATTGCAGAGGCTTCTTTTAAATCTCTGTGCCCATAGTGAAACAAGAACCTCTCTTGTGAAAATTCTGAT GGACTTGTTGATGCTTGATGTAAGAAAGCCTGCTTATTACTCTAGTACTATTGAGCCGCCATATAGATTATATGGTTGTCAGAGCAATGTGATGTACTCA CGTCCTCAATCTTTTGACGGAGTTCCCCCATTGCTGTCCCGACGAATACTTGAAACACTCACTTACCTTGCTCGGAATCATTCATATGTGGCAAAAATTT TGCTTCAGTCTAAGCTGCCGTATCCTGCTATAAGAGAACCAGATAATGCCGATACACGTGGCAAAGCTGTGATGGTTGTTGAGGATGAAATAAATATGGG TGAAAGCAATGAAGGCTACATATCCATTGCAGTGCTTTTAAATCTCTTGAACCAACCACTTTACCTGAGGAGCATAGCCCATCTTGAGCAGCTGCTCAAT TTACTGGATGTTACCATTGATAGTGCTGGAAGCAAGTCTAGTTCATCTGACAAATCCCTGATATCCACTCCTAATCCATCATCAGGTCCTCAAGTTTCAG CTGTGGAGGCAAATGTGAATATAGGTTCGGGTGTTATGCCTTCTGGGGTTGATACATCTAATAAAGTTGATGATGACTCCTCCAAACCCACTTCCTCTGG TGATAATGTGGAATCTGAATCTCAGAGAGTATTGAGTAATCTGCCACAAGCAGAACTCCGTCTCTTGAGTTCATTGCTTGCACATGAAGGCTTGTCGGAT AATGCATATGCTCTTGTTGCGGAAGTAATGAAGAAACTGGTAGCCATTGCTCCAACTCATTGCCAGCTTTTTGTCACTGAGCTTGCCGAAGCTGTTCGAA ACTTGACTTCAACAGCAATGGATGAGTTACGTGTCTTCAGTGAAGCAATGAAATCTCTTATTAGTACCACATCTTCTGATGGGGATGCAGTTTTGAGAGT CTTGCAAGCCTTGAGTTCTCTTGTCACTTCATTGACTGAGAAAGAGAATGTAGTTACCCCTGCTGCTCTTTCTGAGGTTTGGGAAATCAATTCAGCGCTA GAGCCCTTGTGGCATGAGCTGAGCTGTTGCATCAACAAGATAGAGTCCTACTCAGAGTCTACATCTGAACTTTTAACCCTGCCTAGCACATCTGTGCCTA AACCTTCTGGTGTCATCCCTCCACTTCCAGCTGGCTCTCAAAATATTTTACCGTACATAGAGTCTTTCTTTGTGGTTTGTGAGAAGTTACGTCCTGCACA GCAAGGTGCTAGCCATGAGAGCATTCCTGTTGTTTCTGATGTTGAGAATGCAAGCACGTCTGCAATTCCTCAGAAATTATCTGGACCTGCTGTGAAAGTA GATGAGAAAAATGCAGCATTTGTCAGGTTCTCTGAGAGGCATAGGAAGCTACTTAATGCTTTTCTTAGGCAAAAGTCTGGTTTGCTGGAGAAATCTTTCT CACTCATGCTTAAGGTTCCAAGATTTATTGATTTTGATAACAA
• Tissue: pods
• Gene name: LI_gene_194515;
• Additional information: details;

Expression of Ll_transcript_464632

FPKM

• PAB: 3.3
• PNAB: 21.9
• PS1: 31.1
• PS2: 23
• PS3: 29.2
• PW1: 17.7
• PW2: 19.5
• PW3: 18.7

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_464632

• Blastp: E3 ubiquitin-protein ligase UPL1 from Arabidopsis with 34.31% of identity
• Blastx: E3 ubiquitin-protein ligase UPL1 from Arabidopsis with 33.99% of identity
• Eggnog: ubiquitin protein ligase(COG5021)
• Kegg: Link to kegg annotations (AT1G55860)
• CantataDB: Link to cantataDB annotations (CNT0001834)
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019455650.1)
• Pfam: Domain of unknown function (DUF4414) (PF14377.5)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;