Ll_transcript_464639

• Id Trinity: TRINITY_DN52662_c2_g2_i2
• Name Transcript: Ll_transcript_464639
• Sequence: GCCACATCCTGACACAGACCAAGATGATCATGAGATTGATGATGATGATGATTTTGATGAAGTGATGGAGGAAGAGGACGAAGATGATGAGGAAGACGAG GATGGTGTTATACTGCGACTTGAGGAGGGCATAAATGGAATTAATGTTTTTGACCATATTGAGGTTTTTGGCAGAGATAATAGTTTTGCAAATGAAAATT TTCATGGGATGCCAATTGAAGTTTTTGGATCCAGACGTCCAGGGCGGACAACATCTATCTACAGTCTTTTGGGCAGAACTGGTGATACTGCCGCACCTTC TCTCCATCCACTCTTAGTTGAACCTTCCTCCTCATTACCCCAATATACAACGCAATCAGATGATGTACTAGAGAACAACTCATTGAGCTTGGATAGTATG TTATCACTGAGTAGTGGATGCCATGAACGTTGTATGAACTTATGGACTGATATTATCCTGCAGAGTGGTGAGTCAAACACTGGTGTTGTGCCACATGGTT TTGAGGAGTTGTTTGTCTCTCAATTAAGGCAACCAACCCCTGAAAAGTCATCCAACCAGAACATAGCAGAAGTAGGTCCTCATAGTAAAGTCAGCCAGAC ACAAGATTCAGGTGGTGCAAGAGCAAAAGTCCCTGCTGAAAGTAATGCAAATCTGGAAGTCAGTACTTCAACTCCTTCAATAGTTGAGAACAATAACAAT GCGAATATCAGACTTGCAGGAACCAGACATCTGCAAACAGATGTGTCCAGCACTTACACCCAGGCAGTTGCAGTGCAGTTTGAGCATAATGATGGGGCCA TGAGGGATGTCGAAGCTGTGAGCCAGGAGAATAGTGGTAGTGGAGCAACTTTTGGTGAAAGCCTTCGGAGCCTAGACGTAAAGATTGGATGTGCTGATGG ACATGATGGTAGTGGAAAAAGACAAGTTTCTGCAGATAGGACAGCAGGTAATTCACAGGCTGCACACACAAGAAGATCGAATTTGCCTCTAAGTCATTCC TCTACTGTAATTGGAAGAGATGCATCCCTTCATAGTGTTACTGAAGTTTCTGAAAATTCAAGTCGTGATTCAGATCAAGATGGTCCAGCAACAGAGCAGC AGGAGACCAGTGATAACAGGTCAGGAGGGGTTGGCCCTGCTTTTCTGGATGCCCTTCCTAAGGAGCTGCGTGCTGAAGTCCTCTCAGCTCAGCAGGCTCA AGTGGCTCAACCATCAAATGTTGAGTCTCAAAACACTGTGGATATTGATCCAGAGTTCCTTGCAGCTCTTCCCTTAGATATCCGAGCAGAAGTTCTAGCT CAACAGCAAGCACAGAGGTTGCATCAATCTCAAGAGTTGGAAGGTCAACCTGTAGAAATGGATACTCTCTCAATAATTGCAACATTTCCTTCAGATTTAC GAGAAGAGGTTTTGTTAACTTCACCTGATAATATCCTTGCCAATCTTCCACCTGCTCTTGTTGCTGAGGCAAATATGTTGCGGCAGAGGTTTTCATACCG TAGAGGTGAAGCTTCTAGACATGAAAGTGTTCGTTCTGACTTGAATGGAGTGAGGGGGGATGTATATTCACACCTGTCCAGTGGAGCTAAGGTTGTTGAA GCTGATAGAGCACCTCTGGTTGGCACAAAAGCTTTACATGCTATGATTCGGTTGTTTCGGATAGTGCAGCCACTTTATAAAGGTCAATTGCAGAGGCTTC TTTTAAATCTATGTGCTCATAGTGAAACAGGAACCTCTCTAGTGAAAATTTTGATGGACTTACTGATGCTTGCTGTAAGAAAGCCTGCCAATTATTATAG TACAGTTGAGTCACCATACAGGTTATATGGTTGTCAGAGTAATGTGATGTACCCACGTCCTCAATCTTTTGATGGTGTTCCCCCATTGCTGTCTCGGCGA ATACTTGAAACTCTCACTTACCTTGCTCAGAATCATTCATATGTGGCAAAAAAATTGCTTCTGTCTAGGCTGCCTTATCCTTTAATAAAATCAGATAATG CTGATGCATGTGGCAAAAGTGATGAAGGCTGCATATCCATTGCAATACTCTTAAGCCTCTTGAACCAACCACTTTTCTTGAGGAGCATAGCCCATCTTGA AAAGCTGCTAAATTTGCTGGATGTTATCATTGATAGTGCTGGAAGCAAGTCTAGTTCACCTGACAAATTCCAGATTTCTGCTTCTAATCCGTCATCGGGT CCACAAATTTCTTCACCGGATGCAAATGTGAATACAGATTTGGTTCTTATGCCTTCTGGGGTTGATACCTCTAATGAAATTGATGGCTCTTCCAATCTCA CTTCCTCTGATCATAATATGGAAACTGAATCTCCCAGAGTTTTGAGTAATCTGCCACAAGCAGAGCTCCGTCTCCTGAGTTCATTGCTTGCACATGAAGG CTTGTCAAACAATGCATATGCTCTTGTTGCAGAAGTAATGAAGAAATTGGTAGTCATTGCTCCAACTCATCGCCAGCTTTTTGTCACCGAGCTTGCAGAA GCTGTTCGAAACTTGACTTCATCAGCAACAGATCAGTTACACATCTTCTGTGAAGCAATGAAATCTCTTAGCACCACATCTTCTGATGGAGCTGCAGTTT TGAGAGTCTTGCAAGCCTTGAGTTCTGTTGTCAATTCATTGACTGAGAAAGAGAGTGATATAGTTACTCGTGCTGTTATTTCTCAGGTTTGGGAAATCAA TTCAGCACTAGAGCCACTGTGGCATGAGTTGAGCTGTTGCATACACAAGATAGAGTCCTGTTCCCAATCTGCATCTGATTTTTTCACCCTTTCTAGCACA TCTGTGTCTAAACCCTCTGGGGTCATCCCATCACTTCCAGCTGGCTCTCAAAATATTTTACCATACATTGAGTCTTTCTTTGTGGTTTGTGAGAAGTTAC GTCCTGCACAGCAAGGTGCTAGCCATGAGAGCATTCCTGTTGTTTCTGATGTTGAGAATGCAAGCACGTCTGCAATTCCTCAGAAATTATCTGGACCTGC TGTGAAAGTAGATGAGAAAAATGCAGCATTTGTCAGGTTCTCTGAGAGGCATAGGAAGCTACTTAATGCTTTTCTTAGGCAAAAGTCTGGTTTGCTGGAG AAATCTTTCTCACTCATGCTTAAGGTTCCAAGATTTATTGATTTTGATAACAA
• Tissue: pods
• Gene name: LI_gene_194516;
• Additional information: details;

Expression of Ll_transcript_464639

FPKM

• PAB: 0
• PNAB: 0.4
• PS1: 0.2
• PS2: 0.7
• PS3: 1.3
• PW1: 0.4
• PW2: 0.8
• PW3: 0.3

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_464639

• Blastp: E3 ubiquitin-protein ligase UPL2 from Arabidopsis with 41.19% of identity
• Blastx: E3 ubiquitin-protein ligase UPL2 from Arabidopsis with 40.85% of identity
• Eggnog: ubiquitin protein ligase(COG5021)
• Kegg: Link to kegg annotations (AT1G70320)
• CantataDB: Link to cantataDB annotations (CNT0001834)
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019434286.1)
• Pfam: Domain of unknown function (DUF4414) (PF14377.5)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;