Id Trinity | TRINITY_DN52668_c1_g1_i14 |
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Name Transcript | Ll_transcript_463562 |
Sequence | ACAAAATAACGTTACACAGAAGTGAGAAACACACTCAATTCACTCGCTATTACTTTCACTCTCTTTCTCTGTCTGTTACTTCAATTCCATTTCACGTCAT TCTCGTTTCTCAGGACTCTGGATTCTCATTTTCAGATAGTTAGAAGCAGAGGAGTCCGGCGGCATTCTCCTTGCAGCGAGGAATCCTACAAGAGGACAAA CTGGCGTATTGATGCAAATGTCGAAGTCTCCCTCCTCTCCCGAACAACAGCAGTCTATTTCTTCCTCTCCTTCTCAGCCTAGGGAATTTAATGAGGCAAC AGGGATGGATGACCCAGAATCTACAATGGCGACAGTCGCTAATTTTGTGGAGCAATTGCATACAAACTTGTCATCACCACTTGAGAAAGAATTTATTACA GAATGCTTGCTGGGTATTGCCAGGAAAAGAAAGGATGCTAGAGCACTTATTGGTTCCCATGCCCAAGCCTTGCCATTGTTCATAAACATTCTTAGAAATG GAACCCCCATTGCAAAAGTTAATGTTGCTGCCACTCTCAGTGTCCTGTGCAAAGATGAAGAGTTGAGGTTAAAGGTACTTCTAGGTGGTTGTATCCCACC ATTACTGTCGCTCTTAAAATATGAATCTACTGATGCCAGGAAGGCAGCAGCTGAAGCAATATATGATGTTTCCTCTGGTGGTCTTTTGGATGATCATGTT GGTATGAAGATTTTTGTCACAGAAGGTGTAGTTCCGACCTTATGGAATCAACTAAATCCAAAGAACAGGCAAGACAAAGTCGTGGAGGGTTTTATTACTG GAGCATTAAGAAATCTGTGTGGTGACAAAGATGGCTACTGGAAAGCAACATTGGAAGCTGGAGGCGTGGATATTATTGTGGGTCTCTTGTCTTCAGACAA TGCTGTTTCTCAGTCAAATGCAGCTTCTCTATTGGCACGTTTAATGCTGGCTTTCAGTGATAGCATCCCCAAAGTAATAGACTCTGGAGCAATCAAAGCT TTACTTCAGCTTGTTGGTCAGGAAAATCATATTTCTGTACGAGCTAGTGCTGCTGATGCCCTACAGGCCCTATCTTCAAAGTCAACTAAGGCCAAGGAAG CTATTGTTAGTGAAGATGGTCTACCGATACTTATTGGAGCTATAGTTGCTCCTTCTAAAGAGTGTATGCAAGGTGATGGTGGCCAGGCTCTGCAGGAGCA TGCAACTAGAGCATTATCCAATATCCGTGGTGGGATGTCTGCTTTAATACTATATCTTGGAAAACTTTCCTATTCTCCTCGCCTTTCTGTGCCAGTTGGT GATATAATTGGTGCTCTTGCTTATACACTCATGGTCTATGAGGAAAAAGTTGATGCTGACGTGGAACACTTGAATGCAACTAAGATAGAGGATACTCTAG TAACACTTTTAAAGCCTCAAGACAATATGCTGATTCAAGAACGTATCCTCGAGGCTATGGCTAGCCTATATGGTAACGTATGTCTCTCGAAGTGGCTCAA TCAGGCAGATTCAAAGAAGGTCCTTATTGGACTTATAACCATGGCTGCCACTGATGTGCAAGAATATCTTATACTTTCATTGACAAGCTTGTGTTGTGAT GGGGTAGGAATATGGGAGGCTATAAAAAAGAGAGAAGGTATCCAATTACTTATATCATTGCTGGGATTATCTAGTGAGCAGCATCAAGAGTACTCAGTTC AGTTGCTAGCAATCTTAACTCACCAGGTCGATGACAGCAAGTGGGCAATCACTGCTGCTGGAGGGATTCCACCATTGGTGCAGCTGTTGGAGACAGGATC ACAGAAAGCAAAAGAAGAAGCAGCTAATATCCTGTGGAGTTTGTGTTGTCACAGTGAAGATATTTGTGCATGTGTTGAAAGTGCTGGGGCCATCCCGGCA TTTTTGTGGCTGCTTAAGAGTGGTGGACCAAAAGGACAAGAAGCATCTTCTATGGCACTCACAAAGCTTGTCAGGTTAGCTGATTCTGCCACAATTAATC AGCTATTAGCATTGCTTCTAGGGGAGTCTCCAAGCTCGAAGGCCCATATAATCCGAGTTTTAGGTCATGTACTTACCTTGTCTTCAGAAAACGATCTCCT GCAAAAGGGTTCTGCAGCTAATAAAGGCTTGAGATCTCTTGTCCAGGTTCTCAATTCATTGAATGAGGAAACCCAAGAGTATGCAGCCTCAGTCCTAGCT GATTTATTTATCATCAGACAAGACATTTGTGACAGCCTTGCAACTGACGAGGTTGTGCTTCCTTGCATGAAGCTTCTGACCAGCAAAACTCAAGCCGTTG CCACTCAGTCAGCTCGAGTGTTAAGTGCTTTGTCCCATCCAACTAAAAACAAAGCTGCAAATAAGATGTCTTATATTTTAGAGGGGGACATCAACCCACT AATCAAGTTGGCTAAAACATCCTCTGTTGATGCTGCTGAAACTGCCGTTGCTGCATTGGCCAATCTTCTCTTTGATCCTTTTATTGCTGCCGAGGCTCTG GCTGAGGATGTCGTTTCAGCTATAACACGAGTTCTAGCAGAAGGAACCTTAGAAGGTAAGCAAAATGCATCTCGTGCGCTCCATCAATTATTGAAGCATT TTGCTTTAGGTGAAATTCTCAAGGGGAATGCACAATGCCATTTCACTGTGCTTGCACTTGTTGATTCCTTAAGAGTCATGGATATGGATGGAACTGATAC TGCAAATGCTTTAGATGTAATTTCTTTGCTAGCAAGGACTAAACAGGGTGTCAACTTTACTTACCCTCCATGGTCGGTTCTAGCCGAATCGCCATCAAGC TTTGAACCCCTTATTCGCTGCCTCTCTGAGGGGCCTCCCCATGTTCAGGACAAGGCAATTGAAGTTCTGTCTAGGCTTTGTAGAGATCAGCCTGTTGTAC TTGGTGATTTGTTATCTGCTAGTTCTAGATCCATTGGTTCATTAGCTACAAGAATAATGAACTCCTCCAGTTTAGAAGTAAAAGTTGGAGGTGTTGCCTT ACTAATTTGTGCTGCAAAGGAAAAGAAAGAGCTGTCAATGGATTCACTTGATGCTTCTGGGTTGCTAAAACCATTAATATGTTCTTTAGTTGATATGCTG AAACATAATTCTAGCCGCTCTTCATTAGAAATTGAAGTTCACCCTCCTAGCGGTTTTATGGAGAGAAATGCATTTCAAGAATTTGATGAATTTGATATTA TGGACCCAGCTATGGTGTTGGGAAGTAATGTAGCCTTGTGGTTGCTCTCAATTATTGCTTCTCTCCATATAAACAACAAACTTGAAATTATGGAAGCTGG TGGTCTCGAAGCTCTCTCTGACAAACTTGCAAGACACACTTCAAATCCACAGGCGGAATATGAGGATACAGAAGGAATATGGATCAGTGCTTTGCTCTTG GCCATATTATTTCAAGATGCAAGCATTGTTCTATCTCCTGCTACAATGCACATCATATCTTCTCTCACTCTTCTGCTAAGATCAGATGAAATGATTGATA AGTATTTTGCTGCCCAGGCTATGGCTAGTCTTGTTTGTAATGGTAATAAGGGAATAGATCTTGCCATTGCAAATTCCGGTGCTATTGCTGGGTTGATAAC TATTATTGGGCATATAGAGTCAGATATGTCAAACTTGACAGGTTTATCAGGGGAATTCTCTCTTGTAAAAAACCCTGATCAAGTTGTCTTAGATCATCTT TTCGAAATTGAAGATGTAAGAGTGGGATCTACTGCAAGGAAATCAATACCACTGTTGGTGGATCTCTTGAGACCAATAGCAGAAAGGCCTAGTGCTCCAC CAGTAGCTGTCAGACTCTTGATATCCATTGCAAATGGAAGTGACACAAATAAATTAATTTTGGCTGAAGCTGGAGCTCTTGAAGCTTTGAACAAGTACCT GTCCTTGAGCCCTCAAGAATCAACTGAGGCTGCTATTTCTGAGTTATTGAGAATATTATTTTGCAATTCTGATCTTCTTAAACATGAAGCATCAACAAGT TCGTTAAACCAACTCATGGCTGTTTTGCGCCTTGGATCAAGAAATGGTAGATATCATGCAGCAAGAGCACTTCATGAGCTTTTCAATGCTGAGAGCATTA GGGACTCTGAGTTAGCTAAACAGGCCATTCAGCCGTTGGTTGACATGCTTAATACACCATCAGGGAGTGAGCAGGAGGCTGCTCTCATGGCCTTGATCAA GTTAACCTCCGATAATTCTTCAAAAGCATCTCTTTTTACTTATGTGGAAGGCAACCCACTAGAAAGTTTATACAAAATATTGTCTTCTACTGCTTCATCC TTGGAACTGAAGAGCCATGCTGCACAACTCTGCTTTGCTCTTTTTGGTAATAGCAAGATCAGGGCAGATCCAATTGCCACGGAATGCCTAGAACCTCTTA TATCACTGGTGCAATCTGATTCTGGGACAGCAATTCAATATGGGGTTTGTGCTTTTGAGAGATTGTTGGAAGATGAACAACAGATAGAGCTAGCAGCAGC CTATAATGTTGTGGATCTCCTTGTCAGCTTAGTTTCTGGTACAAACTACCAGCTTGTTGAGGCTACCATATCTGCTCTCATCAAATTGGGCAAAGACAGA ACTCCTAGCAAACTAGACATGGTCAAAGCTGGCATTATTAATAATTGTCTAAAGCTACTCCAATCAGCTCCTAGCTCATTATGCTCCACAATTGCGGAGC TGTTTCGCATTTTAACTAATAGTAATGCAATTGCTAGAGGTTCAGATGCTGCAGAAATTGTAGAACCTCTTTTCCATGTTTTGCTTCGTCGAGATTTCAA CTTATGGGGACAACATAGTGCCTTACAAGCACTAGTGAATATATTGGAGAAGCCACAGAGTCTTGCAACCTTAAATCTTACTCCTAGCCAAATTATTGAA CCATTGATTTCATTTCTGGAATCCCCATCCCAAGCTATTCAGCAGCTTGGCACAGAACTTTTATCTCATCTTCTTGCACAAGAACATTTTCAGCAAGATA TTACAACAAAGAATGCAGTTGTGCCTCTTGTAAAACTATCAGGAATTGGAATATTAAACTTACAGCAAACAGCAATAAAAGCATTGGA BLAST |
Tissue | pods |
Gene name | LI_gene_194556; |
Additional information | details; |
PAB | abscising pods |
PNAB | non-abscising pods |
PS1 | seeds stages 1-3 |
PS2 | seeds stages 4-6 |
PS3 | seeds stages 7-8 |
PW1 | pods wall stages 1-3 |
PW2 | pods wall stages 4-6 |
PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_463562
Blastp | Protein CELLULOSE SYNTHASE INTERACTIVE 3 from Arabidopsis with 64.6% of identity |
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Blastx | Protein CELLULOSE SYNTHASE INTERACTIVE 3 from Arabidopsis with 65.24% of identity |
Eggnog | U-box domain-containing protein(ENOG410XRTN) |
Kegg | Link to kegg annotations (AT1G77460) |
CantataDB | - |
Mirbase | - |
Ncbi protein | Link to NCBI protein (XP_019455634.1) |
Pfam | Armadillo/beta-catenin-like repeat (PF00514.22) |
Rfam | - |
GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |