Ll_transcript_465272

• Id Trinity: TRINITY_DN52672_c1_g2_i4
• Name Transcript: Ll_transcript_465272
• Sequence: TATAGATTCACCGAACCTAATTATTTTTTTTAATTTGATAACCTCTCGAATAATCGTAGGAGCCACGAACTGTGTGATAGTGAAAGAAAGAGAATATGTT CGTACCTTAACACATAGGGAAAAAAATCTTATCATATTCTTCGTTGAACGAAACTTTCTCTTTCACACTTTTCCTTTTTGAGTTTTCTCACTTTCTCACG CTACTTTCAGTTTCTCTTCTCAAATACACTTCACTCCACATTCTCAATTTCTCGTCATCGATAACGAATTTTCCTTTCTCAGTAAAATCCAACCGTTCAA TTTGTTGAAAAGGTTTTCCTACTTATACAGTTATACGTAACTCTCAGTTAGGGTTTCCGATTTGAAATTTTGATTCGGATAGAAACAATTTGATCGATTC TACTGATTTCTGTTCCTGTAAATTTGGAGAAACAATTTTATTTTACCGAAATTGATTTCTCCAGATTCATTTTCAGAATGGTGAAGGGAGGGGAAAATTA TGGAAGAAGAGAGAACACGAATTCTGAGAAATCGGATCGTGAAATCTTCAAGGCTTGGGCGAAAGATGTTGCGGAATGCGAAGAACACTTCAAGGTGAGT GTGAAAACTGGATTGAGCAGTGAAGAGGTCCAGAATCGACGACGGATCTATGGATTGAATGAATTGGAGAAGCATGAAGGCCAATCGATTTGGAAATTGG TTCTGGAACAGTTCAATGATACGCTCGTTCGGATTCTCCTTGCCGCCGCAGTAATCTCCTTCGTACTTGCGTGGTACGACGGCAAAGAAGGCGGTGAGAT GGAGATAACAGCTTTCGTGGAGCCGTTGGTGATTTTCTTGATTTTAATTGTGAACGCTATAGTTGGTGTGTGGCAAGAGAGCAATGCCGAGAAGGCGCTG GAAGCTTTGAAGGAAATTCAATCCGAGCACGCGACGGTTATTCGAGATAACCAGAAAATTCCGGATTTACCGGCGAAGGAATTAGTCCCTGGTGATATTG TTGAGCTTAAGGTTGGTGATAAGGTTCCCGCAGATATGCGTGTGGTGCAGTTGATTAGCTCAACTTTGCGGTTAGAGCAGGGTTCCTTAACCGGAGAGAG TGAAGCTGTAAACAAAACTAACAAGCCTGTTCTGGAAGATATGGATATTCAAGGGAAGAGATGTATTGTTTTTGCGGGGACCACGGTTGTTAATGGTAAC TGCATTTGTCTGGTTACTCAGATTGGGATGGACACTGAGATTGGGAAGGTGCATAACCAGATACAGGAGGCTTCGCAGAGTGAGGAAGATACACCACTGA AAAAGAAGCTGAATGAATTCGGAGAGACGCTGACTAAGATAATTGGATTGATATGCATATTGGTTTGGCTTATCAATGTTAAATACTTCCTGAGCTGGGA AATTGTTGATGGCTGGCCGAGGAACTTTAAGTTCTCGTTTGAGAAGTGTACTTATTACTTCGAGATCGCTGTGGCTTTGGCTGTGGCTGCTATTCCGGAA GGTTTGCCTGCGGTGATCACAACTTGCTTGGCTCTAGGTACACGCAAGATGGCGCAGAAGAATGCGCTGGTTCGGAAGCTACCAAGTGTGGAAACTCTGG GTTGTACCACTGTCATTTGTTCAGATAAAACTGGTACATTGACTACAAACCAGATGTCAGTGACGAAATTGGTAGCTATTGGGACTAATGTAGATACACT GCGAGCCTTCAAGGTGGAAGGAACTACCTACAATCCTGCTGATGGTAGAATAGAGAACTGGCCGGCAGGGAAATTGGATGCAAATCTTGAGATGATAGCA AAAATTGCTGCGATTTGTAATGATGCTGGAGTCACACAGGCGGAGCATAAGTTTGTTGCCCATGGAATGCCAACTGAAGCAGCATTGAAGGTTTTGGTAG AGAAGATGGGCCTTCCCGGAGGATCCAAGGATGTACCATCAGCAAGTACACATAGTGTGCTACGTTGTAGTGAATGGTGGAATAAACATGACCCGAGGAT TGCCACTCTTGAGTTTGACCGTGATAGGAAGTCAATGGGTGTTATTGTTGACTCTAGTCTGGGGGAAAAGTCGCTGCTGGTTAAGGGTGCTGTTGAAAAC TTGTTAGAAAGAAGCTCCAAAATTCAGTTGCGTGATGGTTCTGTTGTTAAACTGGACGATAATGCTAGGAACCTTGTGCTCGAAGCTCTTAATAAGATGT CAACTCGTGCATTACGCTGTTTGGGATTTGCATACAAGGATGAGCTCCCTGACTTCAAAAACTACAGTGGTAATGACGATCATCCAGCTCACCAGCTTTT GCTTAATCCTTCCAACTATTCTTCAATAGAAAGTGATCTCATTTTTGTTGGTTTGGTTGGGTTGAGGGATCCTCCTAGGGCGGAGGTATACCAAGCAATT GAAGACTGCAGAGCAGCTGGAATTCGTGTTATGGTTATTACTGGAGACAATAAGAACACTGCAGAAGCTATATGCCATGAAATAGGTGTATTTGCACCCA ATGAAGACATTAGTTTGAAAAGTTTGACTGGCAGAGAGTTTATGGAACTTACTGATAAAAAAGCCCATCTGAGACAGAGTGGTGGACTTTTATTTTCGAG GGCTGAACCTAGGCACAAGCAAGAAATTGTGAGGCTGCTCAAAGATGATGGAGAGGTGGTGGCCATGACTGGAGATGGTGTTAATGACGCACCTGCCTTA AAGCTTGCTGACATTGGTATTGCAATGGGCATTGCAGGGACAGAGGTGGCAAAGGAAGCTTCGGATATGGTGTTGGCTGATGATAATTTTAGCTCAATAG TTTCTGCTGTTGGTGAGGGTAGATCTATCTACAATAATATGAAGGCTTTTATCAGGTACATGATCTCTTCCAATATTGGCGAGGTTGCTTCCATATTTCT AACTGCCGCTCTAGGTATTCCTGAAGGGTTGATACCTGTCCAGCTTCTCTGGGTCAATCTTGTCACCGATGGACCCCCTGCAACAGCCTTGGGATTTAAC CCTCCAGATAAAGATATAATGAAGAAGCCTCCCCGTCGCAGTGATGACTCACTTATTAATTTGTGGATTCTATTCCGCTATATGGTTATTGGGGTTTATG TTGGATTAGCAACAGTCGGTGTCTTCATCATATGGTATACACATGGTTCTTTCTTGGGTATTGACCTTAGTGGGGACGGCCATACACTTGTCACGTATTC CCAACTTGCCAACTGGGGTCAATGCTCTTCATGGAATAACTTCACTGCTTCTCCCTTCACTGCCGGTGGTAAAGTTATATCGTTTGATACACCCTGTGAC TATTTCCAGGCCGGCAAAGTGAAAGCTATGACACTATCCCTCTCTGTGTTGGTAGCCATTGAAATGTTCAACTCTCTCAATGCCCTATCTGAAGATGGAA GCCTTCTGACCATGCCCCCATGGGTCAACCCATGGCTTCTTCTGGCAATGTCTGTGTCATTCGGTCTGCATTTTTTGATCTTGTATGTGCCATTCTTAGC ACAAGTATTCGGTATCGTCCCCCTGAGCTTCAATGAGTGGCTTTTGGTTCTGGCTGTTGCACTTCCTGTGATTCTAATAGACGAGATTCTGAAATTTGTT GGGAGGTGTACAAGCACAAGCGGGTCTCAAGCAGCGGCTGCAAGATCGAAACAAAAATCGGAATAGACAATTTATTATAGTCTTTAGAGAAGTTGCTCAA CCCTTCAGAGGTTTGGAAGTAGTTCTATTGTTGAGACTGAAGAGGTGGTCCAAACTAAGCATTTTTATATTAGGTATTATTTCAGGTCTCTGTAAAGATA TCCCATTTTATTGTGGGGGATGATTGGCCACCTTCCACTGGGTGAACTATATGTTGCTTCTTTTTAATCTTTTTAGCCATTTTTGTTTCAACTTTTTATG ATTTTGAAAAAGAAAGGGAAAACCCATGATTTCACATCTGTATTTCTTAAAAAGCAGAGAGGTTCTTTTTCTGGTTTCTCACATGTAGACTCGTACCGAA AGCAATCATGTCTAAGCCGGAAAGCAGAGAGATTCTAGTTTGCTTTTTATCAGTCCTAAAATTGGAAGATGAAGAGAAATATATTTGTGGAGCAAGGTTG ATGAAGGAATATTTATATTGGCTGATGAATGAATATTTTTCTGG
• Tissue: pods
• Gene name: LI_gene_194588;
• Additional information: details;

Expression of Ll_transcript_465272

FPKM

• PAB: 4
• PNAB: 3.8
• PS1: 2.2
• PS2: 2.6
• PS3: 4
• PW1: 1.2
• PW2: 1.2
• PW3: 0.7

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_465272

• Blastp: Calcium-transporting ATPase 1, endoplasmic reticulum-type from Arabidopsis with 79.96% of identity
• Blastx: Calcium-transporting ATPase 1, endoplasmic reticulum-type from Arabidopsis with 80.8% of identity
• Eggnog: P-type atpase(COG0474)
• Kegg: Link to kegg annotations (AT1G07810)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019425649.1)
• Pfam: Cation transporter/ATPase, N-terminus (PF00690.25)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;