Ll_transcript_462948

• Id Trinity: TRINITY_DN52697_c1_g1_i1
• Name Transcript: Ll_transcript_462948
• Sequence: TACTCTTGAATGTGCTGCACAGGGCTATTTTGTCATTGAAGAGTTCGAGTGATCTATCATCCCTTGCCTTCGTTGAGGCACTTCTTCAGTTCTATCTGCT TCACGTGGTTTCAACCTCAACTTCTAGGAGTGATATTAGAGGTTCTGGCATGGTACCTACAATTTTGCTGCTGTTGGAGGATTATGATCCTGGACATATC CATCTAGTCTGTTTTGCAGTGAAAATCCTTCAGAAGCTTATGGATTGTAGTAGCTCAGCTGTATCTTTGTTGAAAGAGTTGGGGGGCATCGAGCTTTTGG CTCAGAGATTACAGAAAGAGGTACACAAGGTGATTGGTTTAGTTGAAGAAACTGATAACATGATGCTCACCGGTGAAAGCTCAAGACATAGTACCGATCA ATTGTACTCCCAGAAGAGGCTCATAAAGGTTTCTCTAAAGGCACTTGGTTCTGCATCATATGCACCTGCAAATGCTACCAGATCTCAACATTCTCAGGAT AGTTCATTACCATCAACTCTAGTCTTGATATTTGGGAATGTAGATAAGTTCGGAAGCGACATTTATTACTCGGCTGTTACTGTTATGAGTGAAATAATCC ACAAAGATCCTACTTGTTTTTCTGTTCTCCATGAGATGGGTCTTCCTGATGCATTTTTATCTTCAATTAAATCTGGAATACTTCCATCACCAAAGGCCTT GACATGCATTCCAAATGGTCTTGGGGCTATTTGTCTTAATGCAAAAGGGTTAGAAGCTGTTAGAGAATCTTCATCACTTCGGTTCCTTGTTGACATTTTC ACTAGAAAAAAGTATGTTTTGGTCATGAATGAGGCTATTGTTCCACTTGCAAATTCTGTGGAGGAACTGCTGCGTCATGTATCTTCATTGAGAAGCACTG GTGTTGACATTATCATTGAAATCATTCAGAAGATTGCATCCTTCGGGGATGGAACTGGCACAGATTCTAAAGGAAAAGCTAATGGGGGTTCTGCAATGGA AACAGATTCTGAAGTCAAAGAAAATGATGGCCATTGTGGGCTTGTAGATACAATGGCAAATTCATCTTCTGAAGGGATAACTGATGACAACTTTATTCAG CTGTGTGTCTTTCACTTGATGGTATTGGTCCACAGGACTATGGAAAATTCTGAAACATGCCGGCTGTTTGTGGAAAAGTCAGGAATTGAAGCTTTATTGA AGTTGTTATTACAGCCCACTATTGCACAATCTTCAGATGGCATGTCTATTGCTTTACATAGCACCATGGTATTTAAGGGGTTTGCTCAACATCACTCCAC TCCTTTGGCACGTGCCTTTTGTTCCTCTCTTAAAGAGCACTTGAAGAAAGCATTAGCTGGGTTTGGAGCAGCTTTAGAACCACTATTACTGGATCCAAGG ATGACATCTGATAATGGCATATTTTCTTCACTTTTCCTTGTTGAGTTCCTTCTCTTTCTTGCTGCATCAAAAGACAACCGTTGGGTGACTGCATTACTCA CGGAACTTGGGAATGACAGTAAGGATGTTCTTGAAGACATTGGACATGTCCACCGTGAAGCTTTGTGGCAAATTGCTGTGCTAGAAAATACAAAGACTGA GGTTGAGGATGGTGGTGCTTGTTCTTCTGATTCACAACAGGCAAATCTTGATGCAAGTGAAACTGAAGAGCAAAGGTTCAATTCTTTCAGGCAGTTCCTT GATCCTTTACTGAGAAGGAGGACACCGGGATGGAGTATTGAATCTCAGTTTTTTGACCTTATAAATTTGTATCGAGATTTGGGCCGTTCCACTGGTTCTC AACGCAGGTCAAGTTCTGTTGGGCATTTAAACTTGCGGTCAAGTTCTAGTAATCTGTCTGATCATTCTGGGCCTGATGATAATAGCGGGACAACTAATAA GAAGGAATCTGACAAGCATAGAACATATTATAAGTCTTGTTGTGACATGATCAGATCACTTTCATTTCACATTACACATTTGTTCCAAGAGTTGGGGAAA GAAATGCTGCTACCTTCACTTCTAGGTGATGATATCGTGAGTGCAAGTCCTGCTTCAAAATCTGTGGCTTCCACTTTTGCATCCATTTTTGTAGATCACA TGAATTTTGGGGCCCATATAAATATCTCTGGAACCGAAACTTCTATATCAACAAAGTGTCGTTACTTTGGGAAAGTGATTGATTTTATGGATAGTATTCT AATGGAGAGGCCAGATTCATGCAATCCTATTCTATTGAATTATCTGTATGGACGTGGAGTTATTCAATCTGTATTGACCACCTTTGAAGCTACCAGTCAG CTGCTGTTTGCAGTTAATCACGCCCCTGCCTCACCTGTGGATACTGATGATACAAATGAAAAGCAAGATGGCAAGGAAGATATCAATAATTCATGGATTT ATTGTTCTTTAGCTAGTTATGGGAAATTAATGGACCATCTAGTGACCTCCTCTTTTATACTATCATCATTCACAAACCACTTGCTTATAGAGCCCCTTAC AAATGGTGATATACCTTTGCCACGGGATGCTGAGACTATTGTGAAAGTCCTCCAATCAACAGTGTTGAAGACTGTGCTTCCTGTTTGGACTCATCCCCAG TTTGTTGACTGCAGTTATGAATTTATTTCTACAGTTATCTCTATCATTAGGCATATCTATTCAGGTGTTGAAGTAAAAAATGTAAATGGGAGCAGTGGTT CTCGTATTACTGGTCCTCCTCCTAATGAAACAACCATTTCAACTATTGTAGAGATGGGATTTTCCAGGTCTAGAGCAGAGGAAGCTTTGAGGCAAGTTGG GTCAAATAGTGTGGAGTTGGCCATGGAGTGGTTGTTCTCTCATCCAGAGGAGGCACCAGAAGATGACGAACTTGCCCGTGCACTTGCAATGTCCCTTGGG AACTCTGAATCAGACAAAAAGGATGCTGTTGCAAATGACAATGATCAGCAGCTTGAGGAAGAGATTGTCCAACTTCCTCCTGTTGAAGAATTGTTATCTA CTTGCACAAAACTTCTGCTGAAAGAGGATCTTGCTTTTCCTGTACATAACTTACTTGTCATGATATGCTCTCAGGATGATGGTCAATATAGATCTAACGT TGTCACTTTTATTGTTGACCGGATCAAAGAATGTGGTTTGGTTTCTAGCAATGGAAATAACATCATGCTGGCTGCTCTTTTTCATGTTCTTGCATTACTT CTTAATGAGGATACTGTAGCACGGGAAGCCGTTTCAAAGAGTGGTTTGATCAACATAACCTCAGATCTACTCTACCAATGGGATTCTAGTCTTGATAGCA GAGAGAAACAGCAGGTGCCAAAATGGGTCACAGCTGCTTTTCTTGCATTAGACAGGCTGTTGCAAGTGGATCAAAAATTGAATTCTGAAATTGCAGAGCA GTTGAAGAAGGAAGCTGTTAATATCCAGAAGACTTCAATTACCATTGATGAAGATAGGCAAAACAAGTTGCAATCTGAATTAGGAATTCATACAAAGTAT GCAGATATATATGAACAGAAGAGACTTGTTGAGGTTGCTTGTAGTTGTATGAAGAACCAACTTTCCTCAGACACAATGCATGCTGTTTTGCTTCTATGCT CCAATCTCACAAGGAATCACTCTGTTGCTCTTACTTTTCTGGATTCTGGTGGTTTGAGTCTACTGCTTTCGTTGCCAACCAGTAGCCTCTTCCCTGGCTT TGACAACGTTGCTGCTAGTATTGTCCGTCATGTTCTTGAAGACCCACAAACCCTCCAGCAAGCAATGGAATCTGAGATAAAACATAGTCTTGTTGTTGCG TCTAACCGGCATCCAAATGGAAGGGTCAATCCTCGCAATTTCCTTGCAAATTTATCTTCTGTGATTTTTCGGGACCCTGCAATTTTTATGCAAGCTGCTC AAGCTGTGTGTCAGGTTGAAATGGTAGGTGAAAGGCCCTATGTTGTCTTGCTGAAAGATCGTGATAAAGACAAAACTAAGGAGAAAGAAAAAGAGAATGA CAAAACATTGGAGAAGGACACGGTACAGAGTGATAGGAAGGTTGGTTTGGGAAATACAATCATAGCAGCTTCTGGCAATGGCCATGGAAAAACACATGAG CCAAATGCAAAGAGTGTCAAGGGTCATAGAAAACCTACCCAAACTTTTACTAATGTGATTGAACTTCTTCTTGAGTCTATCTGCAGTTTTGTCCCCCCTT TGACAGATGACATTGCCCCAAACAATCCTGCCATCTCAGCATCAAGTGACATGGACATCGATGTCTCTACAGTGAAGGGCAAAGGAAAAGCAGTTGCCAC CATGTCTGAGGGGAATGAAACTAGTAGTAAGGAAGCTTCTGCATCACTTGCGAAGATTGTATTTATCTTGAAGCTTCTGACGGAGATATTATTGATGTAT TCAGCATCTGTCCATGTTCTACTTCGACGAGATGCTGAAATGAGCAGCACTAAAAGTACTCATCAAAAGAGTAATGTTGGTCTAAGCACAAGTGGAATAT TCTACCATATTCTTCATAATTTCCTTCCTTATTCTCGGAATTTGAAGAAGGACAAGAAGGTTGATGGTGATTGGAGACAGAAACTAGCAACCAGGGCTAA CCAGTTCATCGTTGCAGCTTGTGTTCGTTCTACAGAGGCAAGGAGGAGGGTTTTTACTGTGATTAGTCATATCATCAATGAATTTGTTGATTCATGTAAT GGTGTTAAGCCTCCGGGCATTGAAATTCAGGTTTTTGTTGATCTACTTAATGATGTTTTGACTGCCCGTACACCGGCTGGCTCATCCATCTCAGCAGAGG CCTCTGTCACTTTTATGGATGCTGGTTTGGTTATGTCATTTACTCGTACTGTCCAAGTTTTGGACTTGGACCATGCTGACTCATCTAAAGTTGCTACTGG
• Tissue: pods
• Gene name: LI_gene_194837;
• Additional information: details;

Expression of Ll_transcript_462948

FPKM

• PAB: 0.2
• PNAB: 1.9
• PS1: 2.5
• PS2: 1.7
• PS3: 2.3
• PW1: 1.7
• PW2: 2.3
• PW3: 2.1

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_462948

• Blastp: E3 ubiquitin-protein ligase UPL2 from Arabidopsis with 33.27% of identity
• Blastx: E3 ubiquitin-protein ligase UPL1 from Arabidopsis with 33.12% of identity
• Eggnog: ubiquitin protein ligase(COG5021)
• Kegg: Link to kegg annotations (AT1G70320)
• CantataDB: Link to cantataDB annotations (CNT0001834)
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019455650.1)
• Pfam: Domain of Unknown Function (DUF913) (PF06025.11)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;