Ll_transcript_480870

• Id Trinity: TRINITY_DN52700_c1_g1_i1
• Name Transcript: Ll_transcript_480870
• Sequence: CGGACAACATTGCTCTTATTATTTCTTTACCATATATGCACAGAATATTAAAGACATGTATAATTGAAGTTCCATTTTTATATCATTATCTTTTGTACTA TACCTTCTCCCTTTAAAAAAAACTCAATCACATTCACTATAATCCTCATCATCAATAACCACAATACTATTTCTTTCCACCGAATCTGTTTCCCATTTTG CGTGGCGCACTTTCCGCCATTCATTTACCGCCGATCTAATTTTCTTCCTCCTCCACCACTCAATTCTTTGACACCCAGAAGGAAGAACTTTTTTAGTACT TGAGAGTCTAATTACAAGTTTTGTAGTACTTGGCTATGTGGGTTGCTCTTAATTGGAACCATGGTTGTGTTGGTGTGCTTTTTCTTGACTCTTTGGGAAG AATTCAAGCTAATTAACTGTGATTCGTGCTGTTAATTTATCTGATTTGGTATTGGTATCAGTTAATTGTGTGATTAGGAGTATTTGGATTAAGATTTGGA GTTCTAGGTTGTTTAATTGTTATCATGGAAGCTAGATTTGGAACAGAAGCTTATCATTTTTATGGTGTGGGCCCTTCCACTGATTTGAGTAGTTTGGGGA AGAGATCCACAGAGTGGGATTTGAATGAGTGGAGATGGGATGGTGATCTGTTTTTAGCTAGCCGGTTGAATCCGGCGGCGGGTAATGGTGTGGGTCAGCA ATTTTTCCCTCTCGGGTCCGGGATCCCCAACGCTGGGGGTTCTGGTCCCACCAACAGTTCTTCTTCGTGTTCCGAGGAAGCAGATCTTGAGAATCAAAAA GGGAACAAGGAAGGGGAGAGGAAAAGGAGGGTAATTGTGCTTCAGGATGATGGTTTGAATGAAGAAGTGGGCACCCTTAGCTTAAAGGTTGGTGGCCATG GAGAACCGTTGGCGTATAGGGAGATTGCGAGCTGGGATGATGTCAATGGGAAGAAAAGCAGAGTGGCTGGAGGAACTTCGAATCGAGCTGTTTGTCAGGT GGAGGACTGTGGTGCAGATCTGACCAAAGCTAAAGATTATCACCGGCGTCATAAAGTTTGTGAAGTTCACTCCAAGGCTACTAAGGCACTTGTGGGAAAT GCAATGCAGAGATTCTGTCAACAATGTAGTAGGTTTCACTTGCTTCAAGAGTTTGATGAAGGAAAGAGAAGCTGCCGAAGACGACTGGCTGGCCATAATA AACGCAGAAGGAAAACAAATCAGGAAGCTGTTCCGAATGGAAGTACACTCAATGAGGATCAGACTAGCAGTTATCTGTTGATAAGTTTATTGAAAATACT TTCAAATATGCAAACTGAGAGGTCAGATCAAACTACAGAGCAGGATGTGCTAACTCATCTTCTAAGGAGTCTTGCTAGTCAGAATAGTGAACAAGGGGGC AAGAACTTGTCTAACCTTTTGCGGGAACCAGAGAACTTGTTGAAAGAGGGGAGTTCATCTGGGAAGTCAGAGATGGTTTCAACTTTATTCTACAATGGTT CTCAAGGCTCTCCAACTGATATAAGACAGCACCAAACAGTATCTATGAGTAAAATGCAAAAGCAAATGATGCTTATACATGATGCTAGGGTTACTGATCA TCAAACGATGTCTTCTACAAAGCCCAGCATTACGAACAGCCCTCCAGCTTACTCAGAAGCCAGGGACAGTTCTGCTGGACAGGTCAAGATGAATAATTTT GATTTGAATGATATATATATTGACTCAGATGATGGAATTGAAGATGTAGAAAGATTGCCCATCTCCACAAATCATGGGACTAGCTCTCTTGACTACCCAT GGGCACAACAAGATTCTCATCAGTCAAGTCCACCTCAAACAAGTAGAAACTCAGATTCTGCATCTGCCCAGTCCCCTTCTAGTTCTAGTGGAGAAGCGCA GAGCCGCACAGATAGAATTGTTTTCAAACTCTTTGGTAAAGAGCCAAATGATTTTCCTCTTGTACTTAGAGCACAGATTCTCGACTGGCTATCCCACAGT CCTACTGATATAGAGAGCTATATACGGCCTGGTTGTATTGTTTTGACCATTTATCTCCGTCAAGATGAGGCTGTGTGGGATGAACTTTGCTACAATCTGA GTTCCAATTTGAATAGGCTGCTGAATGTCTCTGAGGATTCTTTTTGGAGAACTGGATGGGTTCACATCAGGGTGCAGCATCAAATAGCCTTCATTTTCAA TGGTCAAGTTGTCATAGATAAATCCCTACCTTTCAAAGGTAGCAATTATAGCAAGATTATGAGTGTCAGTCCAGTTGCTGTACCAGCATCAAAGCGAGCT CAGTTTTCTGTTAAGGGTGTCAACCTGATAGGCTCTGCCACTAGGTTAATATGTGCTTTAGAAGGGAAATATCTTCTATGTGAAGATGCTCATGAGTCAA TCGATCAACACCCCAAGGAGCTTGATGAGATCCAGTGCATCCAGTTTTCATGTTCTGTCCCTGTGATGAATGGAAGAGGATTTATTGAGATTGAGGACCA GGGCTTGAGTAGCAGCTTTTTTCCTTTTATAGTGGTTGAAGAGGATGTTTGCTCAGAAATCTGTTTGCTTGAGCCTCTATTAGAATTTAGTGAAACTGAT CCAGATACTGTTGGGACTGGAAAAATTGAAGCAAAAAGTCAAGCCATGGATTTCATTCATGAAATTGGTTGGCTTCTTCACAGAAACCAAAGGAAATCTA GGATGGTTCACTTAAACTCTAGTGCAGAACTCTTTCCATTAAAACGGTTCAAGTGGCTCATGGAGTTCTCTATGGATCATGATTGGTGTGCAGTGGTGAA AAAGCTATTGAACCTGCTTCTTGGTGGAACTGTGACTTCAGGAGATCACCCTTCCCTGTATCTTGCACTTTCAGAGATGGCCCTCCTTCACAGAGCTGTA AGGAGAAATAGCAAGCAGTTAGTGGAGCTGTTTTTGAGATATGTTCCTGAGAATGTTTCTGATAAAGCAGGAACTGAAGACAAGGCACTAGTTGATGGAA AGAATAAGAGCTTCTTGTTTAGACCTGATGTTGCTGGTCCCGCTGGTTTAACACCTCTCCATATAGCAGCTGGCAAAGATGGTTCAGATGAAGTACTGGA TGCTTTAACTAATGATCCTTGCATGGTGGGAATTGACGCGTGGAAGAATGCTCGTGACAGCACAGGCTCCACGCCTGAGGATTATGCACGCTTACGTGGC CATTATACTTACATTCATTTAGTGCAGAAGAAAATTAATAAGAGACAAGGAGCACCTCATGTGGTGGTTGAGATTCCCAGCAATGTGACAGAGAGCACTT CAAACCAGAAGCAAAATGAGTCATCCACTACCTTTGAGATCGGAAAGGCTGAAGTAAAACGCGGCCAAGGTATCTGCAAAGCTTGTGATACTAAATTGTC GTGTAGAACTGCAGTAGGCAGGTCTTTGGTTTACAGACCTGCAATGCTCTCAATGGTGGCCATAGCAGCCGTCTGTGTCTGCGTGGCCCTTCTATTTAAG AGCTCGCCGGTAGTTTTATATGTATTCCAACCCTTCAGGTGGGAGTCATTGGAATTCGGTACATGCTAAGGTTCATTAACTTGAAACTTAAATAAGACTT GATAGGTAATAATATAAGGATGCATTTGTATACTTAATGACTGAGATTTCCTGTAGGATTAGTTCTTTGTATTGGCTAAATTGTGTAATATTATTTACAT ATTTATTATCCTTCAATGGACTTCCTTGTATTATGTATTGGATATTGACTCTTCTGAAACTGTATTTTTGTAGAATCCTATATATTTCAGTGTAATAATT GTATGGGAATATTAAATATTGTCTTTATATTTCAATCTGCATTGTACATGTTTCATTAGTATACGCCTGATGGATTCTGGATTCTGGATTCTCACCCAAA GTATTTTAGTATTATATTGACATGTATTTTTATCACTGATTCTAAGGAATGTAAAGG
• Tissue: pods
• Gene name: LI_gene_194862;
• Additional information: details;

Expression of Ll_transcript_480870

FPKM

• PAB: 11.7
• PNAB: 15.2
• PS1: 18
• PS2: 10.6
• PS3: 15.3
• PW1: 16.4
• PW2: 16.4
• PW3: 9.8

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_480870

• Blastp: Squamosa promoter-binding-like protein 1 from Arabidopsis with 53.33% of identity
• Blastx: Squamosa promoter-binding-like protein 1 from Arabidopsis with 53.33% of identity
• Eggnog: Squamosa promoter-binding-like protein(ENOG4110DQF)
• Kegg: Link to kegg annotations (AT2G47070)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019441263.1)
• Pfam: SBP domain (PF03110.13)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;