| Id Trinity | TRINITY_DN52710_c1_g2_i11 |
|---|---|
| Name Transcript | Ll_transcript_479079 |
| Sequence | CTTTGTCTCAATCTAAAGTAACAATCTTTATCACCTTTTCTCTCAACCCTTTTCATCACTCTCACTCCAGATAATAATTTTTCATCTGGTTACATGAAAA GAATCAGAGAAACCATGGATGAAGTGACAATTGAAACAAATACCTGTGATCAGTTGCAGAAGCAGGAACTTTCTCCTCACGCTCTTCCATTTGCTAGAAG CTATCAACTTGAAGCATTGGAAAAAGCTATAAAGGAAAACACCATAGTTTTTTTGGAGACTGGTTCAGGAAAGACTTTGATAGCCATCATGCTTCTTCGC AGTTACGCGTATCTACTGCGAAAGCCTTCTCCTTACATTGCTGTGTTTTTGGTTCCCAAAGTTGTGCTGGTATCTCAACAAGCTGAATCTGTGAAAGCTC TCACCGATTTAAAAGTCGGAATGTATTGGGGTGAAATGGGAGTTGATTACTGGGATGCTGGTACCTGGAAAAAAGAAATCGAGAAATATGAGGTTCTGGT TATGACTCCGGCAATATTGCTTAGGAGCTTGAGGCATAGCTTTCTCAAATTGAACATGATAAAGGTTCTAATAATGGACGAATGCCATCATGCTAGGGGA AGAGATCCTTACGCTTGCATCATGAGGGAGTTTTATCATGACCAACTACAATCTGGTACCTCTGATCTACCTCGGATTTTCGGGATGACTGCGTCTCCAA TTAAGTCAAAAGTTGGAAATTCTGAATGGACCTTGGCAGAAAATATTCGCAAACTAATGACTCTAATGAATTCAAAGGTATATACTTGTTCAAGTGACGC TATTGCAGAGTTCATTCCACTATCAACCCCAAAATTCAAGTTTTACAGGGAAGATGTAATTCCACCTATGGTAGTTGAAGAGTTAGCTGGTAAGCTCAAG ATGTTGAAAGAACAGCATGAAGAAGCCCTCGTAAATTCAGATTTCACACAATCCGCTATAGATTCTGCACAGAAGAGAATGGAAAAGATTTTGTTCGCTT TAATGTTTTGCTTGGATGAGCTTGGTATTTGGTTGGCTTTGAAGGCTGCAGAGTCCTTATCTTCCAATGAATCTGAATCAATTTCACGTAGTAACTCCGG GGATAGATTTGTTAAAAGTTTCAGTCTCGCTACCGTTCATCATCTTACAACTTACTTACCGTCTGGTCCCGAGTGGTCTTTTGGTGATAATATTAAATCT GATATGGATATAGGGCTGTTAACCTCCAAAGTTTACTGCCTTGTCGAATCTCTGCTCGAGTACAGGGATTTGAATAATATGAGATGTATAGTTTTTGTTG AGAGGGTCATTAGTGCAGTTGTTCTTGAGATTCTTTTGAATGCCTTGCTTCCAAAATATAATAGCTGGAAGGCTAAATTCATAGCAGGACACAATTCTGG ATTGAAAAATCAAACAAGGAAAAAGCAAAATCAAATTGTCGAAGAATTTCGTGATGGACTGGTCAACATCATTGTCGCGACGTCGATTCTTGAAGAGGGT TTAGATGTCCAAAGTTGCAATTTGGTTATTCGATTTGACCCATGTCCCACAGTATGCAGTTTCATACAGTCCCGTGGTCGTGCTAGAATGCATAATTCAG ATTACTTATTAATGGTTAAGAGCGGGGATTCGGATACACATTCAAGACTAGAGAAATACCTTGCAAGTGTGGATGTTATGAGGAAGGAGTCGATGCGTCA GTCTGCGATTCCTTGTGACTCTTTTGAACAGCTCCCGGAGGAAGTGTATCGTGTTGAAAGCACTGGAGCCATTGTTAATCTTAGCTCTAGCATTACTTTG ATATACTTGTATTGCTCATGGCTCCCTTCAGACGGGTACTTTAAACCGTCTCCAAGATGGGACAAAGAGACCGGAACACTGTATCTTCCCAAGAGCTGCC CTCTACAGCCTATTCAGGTACAAGGTGTCAAAAAGTTCTTAAAGAATATTGCATGTCTCGAAGCATGCAAGCAACTTCATAATATCGGAGCTTTGACTGA TAATCTGGTTCCTGATATTGTCGTGGAAGAAGCAGAGGTGGATGAATTTGAGAATGAGCCTTACAATGAGGAGCAACCATGTTATGTACCGACTCAATTG ATCAACCACCTCTCGAAGGATGATAAGACAATGTATCACTGTTATTTAATTGAATTGAAGCAAAATTTTAGCTATGACATCTCTGTGCGTGACATTGTGC TTGCAACAAGAAGTGAGCTTGATCCAGAAACTGAAAGCACGCAATTTGAAATGTGCTTTGACCGGGGTAGTCTGTCGATAAACTTAAGACGCATCGGAGC TGTTCATCTTTCCCCAAATGAGGTTCTTTTGTGTAAAACATTCCAAGTCACTATTCTCAAGATTCTTGTAGATCACAATATTGATAAGTTGGCAGCTAGT TTAAAATCTTTTGATAAACTCTATTTGGACGATGATCTGGAGATCGATTATCTTCTGCTACCGGCCACTGCCATACAACATAGACCTGCCGTAATTGATT GGGTGTCCATTACCTCTGTCAATCCATCTAAAATTATATGCGATAAGCATTCTCCAAAAGTATGGACGAAAAATGGTCTAGTTTGCCCTTGCATACTACA AAACTCTTTGGTTTATACTCCTCATAATGGTCGAATTTATATCACCACTAGTATAATGGAATTGGATGGGAACTCACCTCTGGAACTAAGGGATGGTGGA GTTACGACGTACAAGAAATACTATGAAGAAAAGCATGGCACTCAATTGTGTTTTGAACATCAAGAACTGCTTAAAGCAAGACACATTTTTCTCGTAAAAA ATTACTCTCATGGACGCAGACAAGAGAAGGATAGAGCAGGCAAGAACTATGTTGAACTACCC BLAST |
| Tissue | pods |
| Gene name | LI_gene_194941; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_479079
| Blastp | Endoribonuclease Dicer homolog 2 from Arabidopsis with 53.46% of identity |
|---|---|
| Blastx | Endoribonuclease Dicer homolog 2 from Arabidopsis with 53.46% of identity |
| Eggnog | Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Also processes some mRNAs, and tRNAs when they are encoded in the rRNA operon (By similarity)(COG0571) |
| Kegg | Link to kegg annotations (AT3G03300) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019419124.1) |
| Pfam | Type III restriction enzyme, res subunit (PF04851.14) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |