Ll_transcript_479083

• Id Trinity: TRINITY_DN52710_c1_g2_i13
• Name Transcript: Ll_transcript_479083
• Sequence: TGGCATTGTGGCTGTACAACTTTTCTACCAACAATCCACAACTCTTAACTATATGAATATTGAAAAATAAGCCAAGAAAGCATGGAAGAAATGACAATGG CAATAGATAACTGTAGCCAGCAGAAGCAGCTTTCTCATCATGCTCTTCCATTTGCAAGAAGCTATCAGGTTGAAGCATTGGAGAAAGCTATGAAGGAAAA CACCATTGTGTTCTTAGAGACTGGTGCAGGCAAGACTTTGATAGCCATAATGCTTCTCCGAAGCTATGCTTATCTTCTGCGAAAGCCTTCGCCTTACATT GCAGTTTTCTTGGTTCCGAAAGTTGTGTTGGTATCTCAACAAGCTGAAGCGGTGAAAGTGCTCACTGATTTAAAAGTGGGAATGTATTGGGGAGAAATGG GAGTTGATTACTGGGATGCTTCCACCTGGAACAAAGAATTTGAGAAACATGAGGTTCTGGTTATGACCCCCGCAATATTGCTTAGGAGCTTGAGGCATAG CTTTCTCAAACTTAACATGATAAAGGTTCTAATAATGGACGAATGCCATCATGCTAGGGGTAGAGACCCTTATGCTTGTATCATGAGAGTAAGTGTTATA TCCTCTCCATAGTTTTCTTTTAATTGGTTTGTGCCTTTGAATTTACTACTAATTCATGTCGTAATAATATATTTTTTCTATGTTTTTCATTAATTGGACG CAATTGTTTATTTATATCTATCTTGCATATTACTTGTTCTGCAACTATAGATTTGCACAAACTTATTTTACTTGCTCAAGCTAATTTTCTCCGAGTTGCT TACTTCAACTATTTTTGTATGTCGATAATACAATAAGAAAAAAGTCATAACTCCTAAGACCCAAGAAAAGGGCCAAAGTGGTGGAATTGAACCATCTACC ACCCGGCTAGTTGAAAGACCATCCATATGTTGGTTAGCCATTAGAGTGGAAATAAACAAGTAATATAGGTAGTTTGTTATAGTGCTGTATGCAGTGTCTT TTTTCTCTCCAGAAACTAAGTAATGAAAAGACTTTTCGGGTCCATTCTAGACTTGGTTGCAACATGCTATCACATAAGTGGCGGTCAACTTATGACAACA ATCATTGTAGTTTTTGCTATGCAAGCAGTGCTCTCTTTTGTAAGATTTGATTGTTCGCAGGAGTTTTATCATGACCAATTAAAATCTGGTGTCTCTGATC TACCTCGGATATTCGGGATGACTGCATCTCCAATTAAGACAAATGTTGGGAATTCTGAATGGACCTTGGCAGAAAGTATTCACAAACTAATGACTCTAAT GCATTCAAAGGTATATACTTGTGCAAGTGAAGCTATAACAGAGTTCATTCCAATATCAACCCCAAAATTCAAGTTTTACAGGGAAGATGAAATTTCATAT GTGCTATTTCAAGACTTAGCTGTTAAGATCAAGATGTTAAAACAGCAGCATGAACTCATCCTCAGAAATTCAGATTTCACAGAATCAGCTGCAGAGTCTG CACACAAACGAATCGAAAAGAGTTTTTATGCTATAATGTTTTGCTTGGATGAGCTTGGTGTTTGGTTGGCTTTAAGGGCTGCAGAGTCTTTATTTTCCAA TGAAACCGAATTATTTTCACGTGACAACTCTGGGGATGGACTTGTTAAAAGTTTCAGTCTTGCTACTGTGAATCATCTTACAACTTACTTACCGTCTGGT TCTCAGTGGTCTATTGGTGATAATATTAAATCTGACGTGGATATGGGGCTGTTAACCTCCAAAGTTTTCTGTCTTGTCGAATCTCTGCTTGAGTACAGGG ATTTGAATAATATGAGATGTATCGTTTTTGTTGAAAGGGTCATAACAGCAGTTGTTCTTGAGACTCTTTTGAATGTCTTGCTTCCAAAATACAATAGCTG GAAGACTAAATTTATAGCAGGACACAATTCTGGATTGAAAAATCAAACTAGGAATAAGCAAAATGAAATTGTAGAAGAGTTTCGTGATGGATTGGTCAAC ATTATTGTTGCAACATCGATTCTTGAAGAGGGTTTAGATGTCCAAAGTTGCAATTTGGTTATTAGATTTGACCCGTGTCCCACAGTATGCAGTTTCATAC AGTCCCGAGGTCGTGCCAGAATGCAAAATTCAGATTACGTATTAATGGTTAAGAGTGGGGATTCAGTTACGCATTCAAGACTAGAGAAATACCTTGCGAG TGGGGATATCATGAGGAAGGAGTCCCTGCGTCAATCTTCAATTCCTTGTGGTTCACTTGAACAACTTCCGGAGGAAGTTTATCGTGTTGAAAGCACTGGA GCCATTGTTAATCTTAGTTCTAGCATTACTTTGATATACTTGTATTGCTCATGGCTCCCTTCAGACGGGTACTTTAAACCGTCTCCAAGATGGGACAAAG AGACCGGAACACTGTATCTTCCCAAGAGCTGCCCTCTACAGCCTATTCAGGTACAAGGTGTCAAAAAGTTCTTAAAGAATATTGCATGTCTCGAAGCATG CAAGCAACTTCATAATATCGGAGCTTTGACTGATAATCTGGTTCCTGATATTGTCGTGGAAGAAGCAGAGGTGGATGAATTTGAGAATGAGCCTTACAAT GAGGAGCAACCATGTTATGTACCGACTCAATTGATCAACCACCTCTCGAAGGATGATAAGACAATGTATCACTGTTATTTAATTGAATTGAAGCAAAATT TTAGCTATGACATCTCTGTGCGTGACATTGTGCTTGCAACAAGAAGTGAGCTTGATCCAGAAACTGAAAGCACGCAATTTGAAATGTGCTTTGACCGGGG TAGTCTGTCGATAAACTTAAGACGCATCGGAGCTGTTCATCTTTCCCCAAATGAGGTTCTTTTGTGTAAAACATTCCAAGTCACTATTCTCAAGATTCTT GTAGATCACAATATTGATAAGTTGGCAGCTAGTTTAAAATCTTTTGATAAACTCTATTTGGACGATGATCTGGAGATCGATTATCTTCTGCTACCGGCCA CTGCCATACAACATAGACCTGCCGTAATTGATTGGGTGTCCATTACCTCTGTCAATCCATCTAAAATTATATGCGATAAGCATTCTCCAAAAGTATGGAC GAAAAATGGTCTAGTTTGCCCTTGCATACTACAAAACTCTTTGGTTTATACTCCTCATAATGGTCGAATTTATATCACCACTAGTATAATGGAATTGGAT GGGAACTCACCTCTGGAACTAAGGGATGGTGGAGTTACGACGTACAAGAAATACTATGAAGAAAAGCATGGCACTCAATTGTGTTTTGAACATCAAGAAC TGCTTAAAGCAAGACACATTTTTCTCGTAAAAAATTACTCTCATGGACGCAGACAAGAGAAGGATAGAGCAGGCAAGAACTATGTTGAACTACCC
• Tissue: pods
• Gene name: LI_gene_194941;
• Additional information: details;

Expression of Ll_transcript_479083

FPKM

• PAB: 0
• PNAB: 0.1
• PS1: 0.2
• PS2: 0.3
• PS3: 0.3
• PW1: 0.3
• PW2: 0.1
• PW3: 0

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_479083

• Blastp: Endoribonuclease Dicer homolog 2 from Arabidopsis with 48.31% of identity
• Blastx: Endoribonuclease Dicer homolog 2 from Arabidopsis with 48.31% of identity
• Eggnog: Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Also processes some mRNAs, and tRNAs when they are encoded in the rRNA operon (By similarity)(COG0571)
• Kegg: Link to kegg annotations (AT3G03300)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019440116.1)
• Pfam: Helicase conserved C-terminal domain (PF00271.30)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;