| Id Trinity | TRINITY_DN52710_c1_g2_i14 |
|---|---|
| Name Transcript | Ll_transcript_479084 |
| Sequence | AGCTATGCTTATCTTCTGCGAAAGCCTTCGCCTTACATTGCAGTTTTCTTGGTTCCGAAAGTTGTGTTGGTATCTCAAGTATGCCACTTTATTAATGCCA ATCTTATGTTTTTTGTTGCTAATTTGAGATCACATTGTTTCAGTAGCAATGTGCTTATTTATTGTGGAACTATGTAATGGATTAGTACTTTTGTTCCCTG TGTTTTCTTTGTTCTTGTTAATCTTTAGCAAGCTGAAGCGGTGAAAGTGCTCACTGATTTAAAAGTGGGAATGTATTGGGGAGAAATGGGAGTTGATTAC TGGGATGCTTCCACCTGGAACAAAGAATTTGAGAAACATGAGGTTCTGGTTATGACCCCCGCAATATTGCTTAGGAGCTTGAGGCATAGCTTTCTCAAAC TTAACATGATAAAGGTTCTAATAATGGACGAATGCCATCATGCTAGGGGTAGAGACCCTTATGCTTGTATCATGAGAGAGTTTTATCATGACCAATTAAA ATCTGGTGTCTCTGATCTACCTCGGATATTCGGGATGACTGCATCTCCAATTAAGACAAATGTTGGGAATTCTGAATGGACCTTGGCAGAAAGTATTCAC AAACTAATGACTCTAATGCATTCAAAGGTATATACTTGTGCAAGTGAAGCTATAACAGAGTTCATTCCAATATCAACCCCAAAATTCAAGTTTTACAGGG AAGATGAAATTTCATATGTGCTATTTCAAGACTTAGCTGTTAAGATCAAGATGTTAAAACAGCAGGTGTGTAAAGTTAAGGAGTTGTGCAATAATTCCCC AGGTGTTAAGAGTAGTAATAAGTAATAACTCTCTAAATCAATGCCAGATTGTCAACACTGTCATGTTATTATCTTTATTAGTCAATCATTTCTACTTTAC AAGTTAAGCATTTTTTTTATCAGATATAGTTGATTATTTCCTTGAGGTTATTGACCATGGATATTCTGTTCCCTCAGCATGAACTCATCCTCAGAAATTC AGATTTCACAGAATCAGCTGCAGAGTCTGCACACAAACGAATCGAAAAGAGTTTTTATGCTATAATGTTTTGCTTGGATGAGCTTGGTGTTTGGTTGGCT TTAAGGGCTGCAGAGTCTTTATTTTCCAATGAAACCGAATTATTTTCACGTGACAACTCTGGGGATGGACTTGTTAAAAGTTTCAGTCTTGCTACTGTGA ATCATCTTACAACTTACTTACCGTCTGGTTCTCAGTGGTCTATTGGTGATAATATTAAATCTGACGTGGATATGGGGCTGTTAACCTCCAAAGTTTTCTG TCTTGTCGAATCTCTGCTTGAGTACAGGGATTTGAATAATATGAGATGTATCGTTTTTGTTGAAAGGGTCATAACAGCAGTTGTTCTTGAGACTCTTTTG AATGTCTTGCTTCCAAAATACAATAGCTGGAAGACTAAATTTATAGCAGGACACAATTCTGGATTGAAAAATCAAACTAGGAATAAGCAAAATGAAATTG TAGAAGAGTTTCGTGATGGATTGGTCAACATTATTGTTGCAACATCGATTCTTGAAGAGGGTTTAGATGTCCAAAGTTGCAATTTGGTTATTAGATTTGA CCCGTGTCCCACAGTATGCAGTTTCATACAGTCCCGAGGTCGTGCCAGAATGCAAAATTCAGATTACGTATTAATGGTTAAGAGTGGGGATTCAGTTACG CATTCAAGACTAGAGAAATACCTTGCGAGTGGGGATATCATGAGGAAGGAGTCCCTGCGTCAATCTTCAATTCCTTGTGGTTCACTTGAACAACTTCCGG AGGAAGTTTATCGTGTTGAAAGCACTGGAGCCATTGTTAATCTTAGTTCTAGCATTACTTTGATATACTTGTATTGCTCATGGCTCCCTTCAGACGGGTA CTTTAAACCGTCTCCAAGATGGGACAAAGAGACCGGAACACTGTATCTTCCCAAGAGCTGCCCTCTACAGCCTATTCAGGTACAAGGTGTCAAAAAGTTC TTAAAGAATATTGCATGTCTCGAAGCATGCAAGCAACTTCATAATATCGGAGCTTTGACTGATAATCTGGTTCCTGATATTGTCGTGGAAGAAGCAGAGG TGGATGAATTTGAGAATGAGCCTTACAATGAGGAGCAACCATGTTATGTACCGACTCAATTGATCAACCACCTCTCGAAGGATGATAAGACAATGTATCA CTGTTATTTAATTGAATTGAAGCAAAATTTTAGCTATGACATCTCTGTGCGTGACATTGTGCTTGCAACAAGAAGTGAGCTTGATCCAGAAACTGAAAGC ACGCAATTTGAAATGTGCTTTGACCGGGGTAGTCTGTCGATAAACTTAAGACGCATCGGAGCTGTTCATCTTTCCCCAAATGAGGTTCTTTTGTGTAAAA CATTCCAAGTCACTATTCTCAAGATTCTTGTAGATCACAATATTGATAAGTTGGCAGCTAGTTTAAAATCTTTTGATAAACTCTATTTGGACGATGATCT GGAGATCGATTATCTTCTGCTACCGGCCACTGCCATACAACATAGACCTGCCGTAATTGATTGGGTGTCCATTACCTCTGTCAATCCATCTAAAATTATA TGCGATAAGCATTCTCCAAAAGTATGGACGAAAAATGGTCTAGTTTGCCCTTGCATACTACAAAACTCTTTGGTTTATACTCCTCATAATGGTCGAATTT ATATCACCACTAGTATAATGGAATTGGATGGGAACTCACCTCTGGAACTAAGGGATGGTGGAGTTACGACGTACAAGAAATACTATGAAGAAAAGCATGG CACTCAATTGTGTTTTGAACATCAAGAACTGCTTAAAGCAAGACACATTTTTCTCGTAAAAAATTACTCTCATGGACGCAGACAAGAGAAGGATAGAGCA GGCAAGAACTATGTTGAACTACCC BLAST |
| Tissue | pods |
| Gene name | LI_gene_194941; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_479084
| Blastp | Endoribonuclease Dicer homolog 2 from Arabidopsis with 48.43% of identity |
|---|---|
| Blastx | Endoribonuclease Dicer homolog 2 from Arabidopsis with 48.43% of identity |
| Eggnog | Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Also processes some mRNAs, and tRNAs when they are encoded in the rRNA operon (By similarity)(COG0571) |
| Kegg | Link to kegg annotations (AT3G03300) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019440116.1) |
| Pfam | Helicase conserved C-terminal domain (PF00271.30) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |