| Id Trinity | TRINITY_DN52710_c1_g2_i15 |
|---|---|
| Name Transcript | Ll_transcript_479085 |
| Sequence | GGCGCTTAAGTAGAAAGGTAGTGAGTGAGTGAGTCGTCCTTTGTGAGAGGCTCTTTAACCGACCAAGAAGCGTGCATGATCTTTCACTTTCCCTTTCTCT CTCTATTCTCTATTCTCTATTCTCTATTCTCTATTCTCTATTCTCTATTCTCTTTCTTTTTCACCATGGGAGAAGTGACAATGGAAATAGATACCACTGA CAATCACCCGCACGACCAACTTTCTTCTCATACTCTTCCATTTGCAAGAAGCTATCAACTTGAAGCATTGGAGAAAGCGATGAAGGAAAACACTATAGTG TTCTTGGAGACTGGTTCTGGAAAAACTTTGATAGCTATCATGCTTCTTCGCAGCTATGCTTATCTTCTGCGAAACCCTTCTCCTTACATTGCCGTGTTCT TGGTTCCCAAAGTTGTATTGGTTTCTCAACAAGCTGAAGCTGTGAAAGCACTCACTGATCTAAAAGTGGGTATGTATTGGGGAGAAATGGGAGTTGATTA CTGGGATGCTGCCACTTGGAAGAAAGAAACCGATGAACATGAGGTTCTGGTTATGACTCCCGCAATACTGCTCAGGAGCTTGAGGCATAGCTTTCTCAAA CTGAACATGATAAAGGTTCTAATAATGGACGAATGTCATCATGCTAAGGGTAGAGACCCTTATGCTTGCATCATGAGAGAGTTCTATCATGACCAATTAA AATCTGGCGTCTCTGATCTACCTCGGATTTTTGGGATGACTGCATCTCCAATTAAGTCAAAAGTCGGAAATTCTGAATGGATCTTGGCAGAAAATATTCG CAAACTAATGACTCTAATGCACTCAAAGGTATATACTTGTGCAAGTGAAGCTGTCACAGAGTTCATTCCTATATCAACCCCAAAATTCAAGTTTTACACA GAACATGTAATTCCATATGTGATATTTCAAGAGTTAGCTGGTAAGCTCAAGATGTTGAAACTGCAGGTATGTACATTTAAGGAATTCAATTTTCAATGTA TGCCTTGAAACAATTGAAAGAAGAAAGAATCCAAGGTGTTAAGATTAGTAATAAGCCTCTAAGTCATTTGAATTCTGAGTAACATGTGTCTGCATCAATG CCAGGTTGTCAATGCTGTCAAGTTCTTATGTTTATTAGTCAGAATTAAGTTAGAATCTATTTCTTCTCTATTTAGTGCTCCTTTACAAGTTAAGCATTTT TTATCAGATGATTGTTTATTGTTTCCTCGAGATCATTGACTATGAATATTTTGTTCCCTCAGTATGAACTCGCCGTCGGAAATTCAGATTTTACACAATC AGCTGCAGAGTCTGCACACAAGCGAATTGAAAAGATTTTTGATTCTTTAATGTTTTGCTTGGATGAGCTTGGTGTTTGGTTGGCTCTAAAGGCTGCAGAG TCCTTATCTACCGATGAATATGAATCATTTTCATGTGGTAACTCTGGTGATGGACTCGTTAAAAGTTTTAGTCTTGCTACTGTGCATCATCTCACAACTT ATTTACCGTCTGGTCCTCAGTGGTCTATTGGTGATAATATTAAATCTGATGAGGATATGGGGCTTTTAACCTCCAAAGTTTGCTGTCTTGTCGACTCTCT GGTTGAGTACAGGGATTTGAATAATATGAGATGTATAGTTTTTGTTGAAAGGATCATTACAGCAGTTGTTCTTGAGACACTTTTGAATGCCTTGCTTCCG AAATACAATAGTTGGAAGACTAAGTTCATAGCTGGACACAATTCTTGGTTGAAAAATCAAACAAGGAAGACACAAAATGAAATCGTGGAAGAATTTCGTG ATGGATTGGTCAACATCATTGTTGCAACATCGATTCTTGAAGAGGGTTTAGATGTCCAGAGTTGCAATTTGGTTATTAGATTTGACCCATGTCCCACAGT ATGCAGTTTCATACAGTCCCGAGGTCGTGCCAGAATGCAAAATTCAGATTACTTATTAATGGTTAAGAGTGGGGATTCAGTGACACATTCAAGACTCGAG AATTACCTTGCATGCGGAGATATCATGAGGAAGGAGTCCTTGCGTCAGTCTTCAATTCCTTGTGGTTTTTTTGAACAACTTCCGGAGGAAGTTTATCGCG TTGAAAGCACTGGAGCCATTGTTAATCTTAGTTCTAGCATTACATTGATATACTTGTATTGCTCATGGCTCCCTTCAGATGGGTACTTTAAACCATCTCC AAGATGGGACAAAGAGACCGGGACACTATATCTTCCCAAGAGCTGCCCTCTGCAGCAACCTATTCAGGTACAAGGTGACAAAAAATTCTCGAAGAATATT GCATGCCTCGAAGCATGCAAACAACTTCATAAAATTGGAGCTTTGACTGATAATCTCGTTCCAGATATTGTCGTGGAAGAAGCAGAGGTGGATGCATTTG AGAATGAACCTTACACTGAGGAGCAACCAAGTTATGTACCATACCAATTGGTCAACAGCTTGTCAAAAAACGAGAAGAAAATTTACCACTGTTATTTGAT CGAGTTGAAGCAAAATTTTAGCTATGACATCTCTGTCCGCGACATTGTGTTTGCAACAAGAAATGAGCTTGATCCAGTAATTGGAAGCACACAATTTGAA ATGTGCTTTGACAGGGGTACCCTATCAGTAAACTTGAGATGCTTTGGAACTGTTCATCTTTCCCCAAATGAGGTTCTTTTGTGTAAAAAATTCCAAGTCA CTATTCTCAAGATTCTTGTAGATCGTAATATGGATAAGTTGGTAGCGAGTTTAGAAT BLAST |
| Tissue | pods |
| Gene name | LI_gene_194941; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_479085
| Blastp | Endoribonuclease Dicer homolog 2 from Arabidopsis with 51.08% of identity |
|---|---|
| Blastx | Endoribonuclease Dicer homolog 2 from Arabidopsis with 51.08% of identity |
| Eggnog | Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Also processes some mRNAs, and tRNAs when they are encoded in the rRNA operon (By similarity)(COG0571) |
| Kegg | Link to kegg annotations (AT3G03300) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019426302.1) |
| Pfam | Helicase conserved C-terminal domain (PF00271.30) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |