| Id Trinity | TRINITY_DN52710_c1_g2_i16 |
|---|---|
| Name Transcript | Ll_transcript_479089 |
| Sequence | CACTTTTGTAATCTTTTATTGCTTGTAGGAGTTTTATCATGACCAACTACAATCTGGTACCTCTGATCTACCTCGGATTTTCGGGATGACTGCGTCTCCA ATTAAGTCAAAAGTTGGAAATTCTGAATGGACCTTGGCAGAAAATATTCGCAAACTAATGACTCTAATGAATTCAAAGGTATATACTTGTTCAAGTGACG CTATTGCAGAGTTCATTCCACTATCAACCCCAAAATTCAAGTTTTACAGGGAAGATGTAATTCCACCTATGGTAGTTGAAGAGTTAGCTGGTAAGCTCAA GATGTTGAAAGAACAGCATGAAGAAGCCCTCGTAAATTCAGATTTCACACAATCCGCTATAGATTCTGCACAGAAGAGAATGGAAAAGATTTTGTTCGCT TTAATGTTTTGCTTGGATGAGCTTGGTATTTGGTTGGCTTTGAAGGCTGCAGAGTCCTTATCTTCCAATGAATCTGAATCAATTTCACGTAGTAACTCCG GGGATAGATTTGTTAAAAGTTTCAGTCTCGCTACCGTTCATCATCTTACAACTTACTTACCGTCTGGTCCCGAGTGGTCTTTTGGTGATAATATTAAATC TGATATGGATATAGGGCTGTTAACCTCCAAAGTTTACTGCCTTGTCGAATCTCTGCTCGAGTACAGGGATTTGAATAATATGAGATGTATAGTTTTTGTT GAGAGGGTCATTAGTGCAGTTGTTCTTGAGATTCTTTTGAATGCCTTGCTTCCAAAATATAATAGCTGGAAGGCTAAATTCATAGCAGGACACAATTCTG GATTGAAAAATCAAACAAGGAAAAAGCAAAATCAAATTGTCGAAGAATTTCGTGATGGACTGGTCAACATCATTGTCGCGACGTCGATTCTTGAAGAGGG TTTAGATGTCCAAAGTTGCAATTTGGTTATTCGATTTGACCCATGTCCCACAGTATGCAGTTTCATACAGTCCCGAGGTCGTGCCAGAATGCAAAATTCA GATTACGTATTAATGGTTAAGAGTGGGGATTCAGTTACGCATTCAAGACTAGAGAAATACCTTGCGAGTGGGGATATCATGAGGAAGGAGTCCCTGCGTC AATCTTCAATTCCTTGTGGTTCACTTGAACAACTTCCGGAGGAAGTTTATCGTGTTGAAAGCACTGGAGCCATTGTTAATCTTAGTTCTAGCATTACTTT GATATACTTGTATTGCTCATGGCTCCCTTCAGACGGGTACTTTAAACCGTCTCCAAGATGGGACAAAGAGAC BLAST |
| Tissue | pods |
| Gene name | LI_gene_194941; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_479089
| Blastp | Endoribonuclease Dicer homolog 2 from Arabidopsis with 55% of identity |
|---|---|
| Blastx | Endoribonuclease Dicer homolog 2 from Arabidopsis with 55.85% of identity |
| Eggnog | Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Also processes some mRNAs, and tRNAs when they are encoded in the rRNA operon (By similarity)(COG0571) |
| Kegg | Link to kegg annotations (AT3G03300) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019419125.1) |
| Pfam | Helicase conserved C-terminal domain (PF00271.30) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |