| Id Trinity | TRINITY_DN52710_c1_g2_i3 |
|---|---|
| Name Transcript | Ll_transcript_479067 |
| Sequence | GGCGCTTAAGTAGAAAGGTAGTGAGTGAGTGAGTCGTCCTTTGTGAGAGGCTCTTTAACCGACCAAGAAGCGTGCATGATCTTTCACTTTCCCTTTCTCT CTCTATTCTCTATTCTCTATTCTCTATTCTCTATTCTCTATTCTCTATTCTCTTTCTTTTTCACCATGGGAGAAGTGACAATGGAAATAGATACCACTGA CAATCACCCGCACGACCAACTTTCTTCTCATACTCTTCCATTTGCAAGAAGCTATCAACTTGAAGCATTGGAGAAAGCGATGAAGGAAAACACTATAGTG TTCTTGGAGACTGGTTCTGGAAAAACTTTGATAGCTATCATGCTTCTTCGCAGCTATGCTTATCTTCTGCGAAACCCTTCTCCTTACATTGCCGTGTTCT TGGTTCCCAAAGTTGTATTGGTTTCTCAACAAGCTGAAGCTGTGAAAGCACTCACTGATCTAAAAGTGGGTATGTATTGGGGAGAAATGGGAGTTGATTA CTGGGATGCTGCCACTTGGAAGAAAGAAACCGATGAACATGAGGTTCTGGTTATGACTCCCGCAATACTGCTCAGGAGCTTGAGGCATAGCTTTCTCAAA CTGAACATGATAAAGGTTCTAATAATGGACGAATGTCATCATGCTAAGGGTAGAGACCCTTATGCTTGCATCATGAGAGAGTTCTATCATGACCAATTAA AATCTGGCGTCTCTGATCTACCTCGGATTTTTGGGATGACTGCATCTCCAATTAAGTCAAAAGTCGGAAATTCTGAATGGATCTTGGCAGAAAATATTCG CAAACTAATGACTCTAATGCACTCAAAGGTATATACTTGTGCAAGTGAAGCTGTCACAGAGTTCATTCCTATATCAACCCCAAAATTCAAGTTTTACACA GAACATGTAATTCCATATGTGATATTTCAAGAGTTAGCTGGTAAGCTCAAGATGTTGAAACTGCAGTATGAACTCGCCGTCGGAAATTCAGATTTTACAC AATCAGCTGCAGAGTCTGCACACAAGCGAATTGAAAAGATTTTTGATTCTTTAATGTTTTGCTTGGATGAGCTTGGTGTTTGGTTGGCTCTAAAGGCTGC AGAGTCCTTATCTACCGATGAATATGAATCATTTTCATGTGGTAACTCTGGTGATGGACTCGTTAAAAGTTTTAGTCTTGCTACTGTGCATCATCTCACA ACTTATTTACCGTCTGGTCCTCAGTGGTCTATTGGTGATAATATTAAATCTGATGAGGATATGGGGCTTTTAACCTCCAAAGTTTGCTGTCTTGTCGACT CTCTGGTTGAGTACAGGGATTTGAATAATATGAGATGTATAGTTTTTGTTGAAAGGATCATTACAGCAGTTGTTCTTGAGACACTTTTGAATGCCTTGCT TCCGAAATACAATAGTTGGAAGACTAAGTTCATAGCTGGACACAATTCTTGGTTGAAAAATCAAACAAGGAAGACACAAAATGAAATCGTGGAAGAATTT CGTGATGGATTGGTCAACATCATTGTTGCAACATCGATTCTTGAAGAGGGTTTAGATGTCCAGAGTTGCAATTTGGTTATTAGATTTGACCCATGTCCCA CAGTATGCAGTTTCATACAGTCCCGAGGTCGTGCCAGAATGCAAAATTCAGATTACTTATTAATGGTTAAGAGTGGGGATTCAGTGACACATTCAAGACT CGAGAATTACCTTGCATGCGGAGATATCATGAGGAAGGAGTCCTTGCGTCAGTCTTCAATTCCTTGTGGTTTTTTTGAACAACTTCCGGAGGAAGTTTAT CGCGTTGAAAGCACTGGAGCCATTGTTAATCTTAGTTCTAGCATTACATTGATATACTTGTATTGCTCATGGCTCCCTTCAGATGGGTACTTTAAACCAT CTCCAAGATGGGACAAAGAGACCGGGACACTATATCTTCCCAAGAGCTGCCCTCTGCAGCAACCTATTCAGGTACAAGGTGACAAAAAATTCTCGAAGAA TATTGCATGCCTCGAAGCATGCAAACAACTTCATAAAATTGGAGCTTTGACTGATAATCTCGTTCCAGATATTGTCGTGGAAGAAGCAGAGGTGGATGCA TTTGAGAATGAACCTTACACTGAGGAGCAACCAAGTTATGTACCATACCAATTGGTCAACAGCTTGTCAAAAAACGAGAAGAAAATTTACCACTGTTATT TGATCGAGTTGAAGCAAAATTTTAGCTATGACATCTCTGTCCGCGACATTGTGTTTGCAACAAGAAATGAGCTTGATCCAGTAATTGGAAGCACACAATT TGAAATGTGCTTTGACAGGGGTACCCTATCAGTAAACTTGAGATGCTTTGGAACTGTTCATCTTTCCCCAAATGAGGTTCTTTTGTGTAAAAAATTCCAA GTCACTATTCTCAAGATTCTTGTAGATCGTAATATGGATAAGTTGGTAGCGAGTTTAGAAT BLAST |
| Tissue | pods |
| Gene name | LI_gene_194941; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_479067
| Blastp | Endoribonuclease Dicer homolog 2 from Arabidopsis with 55.83% of identity |
|---|---|
| Blastx | Endoribonuclease Dicer homolog 2 from Arabidopsis with 55.87% of identity |
| Eggnog | Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Also processes some mRNAs, and tRNAs when they are encoded in the rRNA operon (By similarity)(COG0571) |
| Kegg | Link to kegg annotations (AT3G03300) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019426302.1) |
| Pfam | Type III restriction enzyme, res subunit (PF04851.14) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |