| Id Trinity | TRINITY_DN52710_c1_g2_i9 |
|---|---|
| Name Transcript | Ll_transcript_479076 |
| Sequence | TAACCTTTCATCTCCCCCATGATAAAAAGTATGATTTTTAAGTGTTTTGCATTTATGGGTTTTTTATATTGTGTAGTTACATGAAAAGAATCAGAGAAAC CATGGATGAAGTGACAATTGAAACAAATACCTGTGATCAGTTGCAGAAGCAGGAACTTTCTCCTCACGCTCTTCCATTTGCTAGAAGCTATCAACTTGAA GCATTGGAAAAAGCTATAAAGGAAAACACCATAGTTTTTTTGGAGACTGGTTCAGGAAAGACTTTGATAGCCATCATGCTTCTTCGCAGTTACGCGTATC TACTGCGAAAGCCTTCTCCTTACATTGCTGTGTTTTTGGTTCCCAAAGTTGTGCTGGTATCTCAACAAGCTGAATCTGTGAAAGCTCTCACCGATTTAAA AGTCGGAATGTATTGGGGTGAAATGGGAGTTGATTACTGGGATGCTGGTACCTGGAAAAAAGAAATCGAGAAATATGAGGTTCTGGTTATGACTCCGGCA ATATTGCTTAGGAGCTTGAGGCATAGCTTTCTCAAATTGAACATGATAAAGGTTCTAATAATGGACGAATGCCATCATGCTAGGGGAAGAGATCCTTACG CTTGCATCATGAGGGAGTTTTATCATGACCAACTACAATCTGGTACCTCTGATCTACCTCGGATTTTCGGGATGACTGCGTCTCCAATTAAGTCAAAAGT TGGAAATTCTGAATGGACCTTGGCAGAAAATATTCGCAAACTAATGACTCTAATGAATTCAAAGGTATATACTTGTTCAAGTGACGCTATTGCAGAGTTC ATTCCACTATCAACCCCAAAATTCAAGTTTTACAGGGAAGATGTAATTCCACCTATGGTAGTTGAAGAGTTAGCTGGTAAGCTCAAGATGTTGAAAGAAC AGCATGAAGAAGCCCTCGTAAATTCAGATTTCACACAATCCGCTATAGATTCTGCACAGAAGAGAATGGAAAAGATTTTGTTCGCTTTAATGTTTTGCTT GGATGAGCTTGGTATTTGGTTGGCTTTGAAGGCTGCAGAGTCCTTATCTTCCAATGAATCTGAATCAATTTCACGTAGTAACTCCGGGGATAGATTTGTT AAAAGTTTCAGTCTCGCTACCGTTCATCATCTTACAACTTACTTACCGTCTGGTCCCGAGTGGTCTTTTGGTGATAATATTAAATCTGATATGGATATAG GGCTGTTAACCTCCAAAGTTTACTGCCTTGTCGAATCTCTGCTCGAGTACAGGGATTTGAATAATATGAGATGTATAGTTTTTGTTGAGAGGGTCATTAG TGCAGTTGTTCTTGAGATTCTTTTGAATGCCTTGCTTCCAAAATATAATAGCTGGAAGGCTAAATTCATAGCAGGACACAATTCTGGATTGAAAAATCAA ACAAGGAAAAAGCAAAATCAAATTGTCGAAGAATTTCGTGATGGACTGGTCAACATCATTGTCGCGACGTCGATTCTTGAAGAGGGTTTAGATGTCCAAA GTTGCAATTTGGTTATTCGATTTGACCCATGTCCCACAGTATGCAGTTTCATACAGTCCCGTGGTCGTGCTAGAATGCATAATTCAGATTACTTATTAAT GGTTAAGAGCGGGGATTCGGATACACATTCAAGACTAGAGAAATACCTTGCAAGTGTGGATGTTATGAGGAAGGAGTCGATGCGTCAGTCTGCGATTCCT TGTGACTCTTTTGAACAGCTCCCGGAGGAAGTGTATCGTGTTGAAAGCACTGGAGCCATTGTTAATCTTAGCTCTAGCATTACTTTGATATACTTGTATT GCTCATGGCTCCCTTCAGATGGGTACTTTAAACCATCTCCAAGATGGGACAAAGAGACCGGGACACTATATCTTCCCAAGAGCTGCCCTCTGCAGCAACC TATTCAGGTACAAGGTGACAAAAAATTCTCGAAGAATATTGCATGCCTCGAAGCATGCAAACAACTTCATAAAATTGGAGCTTTGACTGATAATCTCGTT CCAGATATTGTCGTGGAAGAAGCAGAGGTGGATGCATTTGAGAATGAACCTTACACTGAGGAGCAACCAAGTTATGTACCATACCAATTGGTCAACAGCT TGTCAAAAAACGAGAAGAAAATTTACCACTGTTATTTGATCGAGTTGAAGCAAAATTTTAGCTATGACATCTCTGTCCGCGACATTGTGTTTGCAACAAG AAATGAGCTTGATCCAGTAATTGGAAGCACACAATTTGAAATGTGCTTTGACAGGGGTACCCTATCAGTAAACTTGAGATGCTTTGGAACTGTTCATCTT TCCCCAAATGAGGTTCTTTTGTGTAAAAAATTCCAAGTCACTATTCTCAAGATTCTTGTAGATCGTAATATGGATAAGTTGGTAGCGAGTTTAGAAT BLAST |
| Tissue | pods |
| Gene name | LI_gene_194941; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_479076
| Blastp | Endoribonuclease Dicer homolog 2 from Arabidopsis with 56.19% of identity |
|---|---|
| Blastx | Endoribonuclease Dicer homolog 2 from Arabidopsis with 56.19% of identity |
| Eggnog | Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Also processes some mRNAs, and tRNAs when they are encoded in the rRNA operon (By similarity)(COG0571) |
| Kegg | Link to kegg annotations (AT3G03300) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019419124.1) |
| Pfam | Type III restriction enzyme, res subunit (PF04851.14) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |