Ll_transcript_479612

• Id Trinity: TRINITY_DN52720_c3_g3_i1
• Name Transcript: Ll_transcript_479612
• Sequence: AGAGTTCAGACCAAACAAACTAAATAACAGAAAAAAACTGCTGTGACCTTTTCAGTTAACCCTTCCCTATTTCACATTACTCATTCTATTTTATGTGAAT AAATAATAAAGTTTTTCTGATTTCTGAGTATTAGGTCAGTGACATGAATAAAGCTAATAATTGTATGAGATGGGTTCTCTTGGATTTCATTCAAAAGTGC AATAACTTGAGATCCTTCAACAAAATTCATGCACACCTATTGACTTCTGGCCATGTTGCCAATGACCTTGTTCTCACCAAAGTTTCTAACTTTTTTGGAA AACATGTCACTGATCTCCATTACCCTTACAATTTCTTGAAGCATTTTGATTGGAAGTTGAGCTCTTTCCCTTGCAATTTGATTATTTCTGGATATGGTGC TGGCCACTTCCCCTGGGCTGCAATCCTAGTTTATAGACTTGTTGTGAGAAATGGGTTTGTGCCTGATGTGTACACTGTTCCTGCACTTTTGAAATCATGT GCTAAGTTTAAAGGGGTTAAGGAGGTTACACAGTTTCACTGTTTAGTTGTCAGAAATGCTTTGTGGTGTGACATTTATGTTCAGAACAGTCTTGTCCATG TTTATAGCATTTGTGGCGACACTGCTTCTGCTGTTAAGGTGTTTGATGATATGCTTGTGAGAGATGTGGTCTCTTGGACTGGTTTGATATCTGGTTATGT CAAGGCTGAGTTATTTGATAATGCCATTGCATTGTTTCTGAGGATGGATGTGGAGCCTAATGTGGCTACATTTGTTAGCATAATTGGGGCTTGTGGGAAG CTGAGTTTTTTAAATTTGGGAAAAGGAATTCATGGGCTGGTCGTAAAATGTCCACACGGGAAGGAATTGGTGGTAAGCAATGCTTTGATAGATATGTATA TGAAGTGTGAGTCTGTTACTGATGCAAAGCGAATATTCAATGAGATACCTGAAAAGGACGTTATTTCTTGGACTAGTATGATAAGTGGATTGGTGCAAAG TCAGTCTCCTAGGGAATCAATAGACTTGTTCTGTGAAATGCAGGCTTCGGGTTTTGAGCCTGATGGGATGATACTAACCAGTGTGCTTTCTGCTTGTGCC AGTCTTGGGCTTCTTGATTATGGAAGATGGGTCCATGAATACATTGATCATAGCCGTATCAAATGGGATGTTCATATAGGTACAGCATTGGTAGACATGT ATGCAAAATGTGGTTGCATAGAGATGGCACAACATATTTTTAACGAGATGCCTTCTAAGAATATCCGTACTTGGAATGCCTATGTAGGTGGTTTAGCAAT ACATGGGCATGGACAAGAAGCGTTGGAACAATTTGGAGAATTGATTGAATCTGGTACAAGGCTTAACGAGGTGACATTTCTAGCAGTCTTAACAGCATGC TGCCATTCTGGCTTGGTTGATGAAGGCCGTAGGTATTTCAATGAGATGACAAGTCCAAGCTACAACTTTTCTCCCTGGTTAGAGCACTATGGATGTATGG TTGATTTACTCTGCAGGGCTGGATTGGTGGGGGAAGCTATGGAGTTGATAAAGACAATGCCCATGCCACCCGATGTACAGATCATAGGAGCACTTTTGAG CGCCTGCAATACCTATGGAAACACTGGATTTTCTCAAGAAATGTTGAAATCTCTCCATAAATTTGAATACCAAGATAGTGGGATATATGTGCTTCTGTCT AATCTATATGCAGCTAATAAGAATTGGGGTGAAGTACGAAGCTTGAGGAGACTGATGAAGGAGAAAGGAATAAGCAAGGCTCCGGGTTCTAGCCTTATAA GGGTGGATGGTAAGAGTCATGAATTTTTAGTTGGAGATAGTAAACATCCTCGAAGTGAGGATATTCATGTACTACTAAACATCCTTGCCAATCAAATCTA CCTTGAGGGGAATATCAATACCATTTCCTGATCAAACAGGTACCTCAATGATTTGAAGCTCGGATGCTTCTCCTTCTCCTCCTTCAAACTGCGTTGTGTG TATCCGACCAGAGAAAGAAGTCAAAGAAGCTAATTCTTCTTCTTGTAAGCTAGATGCTGCTGACTTTTGTTCAATCTCTACATCATTTCCAGAAGAATCT TCCGACAGCTGATCCTGCCTCCTTTCAGGCATGAGGTTTACAATTCCTGCAATAGAAGAAGATTCCAGTACGGAAAGAGCAGATTTCTTGACAAACAGGC ATCCAAACCCAGATGGATTTTCTCCGAAAACCTTATAGAATGAACAAATGAGAAATTCAGGGCGAAAGAGAGAGAGGCCAAAGCTGTCCATGTCTTTAGG TCCCAATGCACAAGCATCAATCAACACATGCCACCCATTCTCTTGTGCTATGCTCATCCATAGATAGGGATATCTTGCTCCCGTTACTCTGGAATGAAGT GGAAACACAAAAAGACCATTCTTTTTCTTCTTATTCCTCTTACTCTCAATCATCTTCCTCAACTTTGTTGACTGCATCCTGAGCCTTGGCCATGAGAACT CTGCCGACATAGCCTTTGCCCCTCTCTTCTCTGAGTAACTAATCATTGCTTCTACTGCCTCGCTCTCATAGTCATAAACTGTCAGAAGCTTCTTACTAGA TTGGAATGGATAGGAATCAGCTACTAGTTTGAAAGCTGCTGTCCTGTTTGCAGTGAAAACCATGAAATAATCCTTTTCAGAAATGTTAAGGAACTTCATT ATTCTTCTCCTCATTGCAGACTCAAATTCCGACTCATAACCCCCATGAAGCAATAAGGTCTTCAGATTCCCTGTCTTATAGGCTATGCTAAAGAAGGGAA TATCTGAATATCGCTGTGGAGATTGAGGAGGTGTTGAAGAAGAAGCAAGTTGAGTTTTGGAAGCATCATGGTGTTGTAATTGTTGGCGTTGGTGGTAAGA AAAGAGGCCAATTCCAATATAATCAAGGCAAGTATGATCGGAGAAAGAGAGATGGTAATATTCTGTGGCTCTGACTTTGTCAACTTGCTCAGTCTCTGGG TATTGAGGGTAAACTTTGTTGAACTCGTTGAGTGATTGTTGAAGTGATGGAAGGGACTCGTGATTAGTGAATTTAGTGTTTGGAAAGATAGAAGATGTTG TTGTTGCTGCGAAGTTGTGACGGCACTCTGAAGAACTGTTTCTTGGCTTGGTTATGTTATGAGATTGTGGTGATGAGTTGAACAATAAGGTTGGGCAGCA ACCTTGAGGGCATACTTGTTTGACCTCATTTTGGCGCAGTGACTGCATTTTTTTCTTCTCTTCACTCAGTGACAACAATTCTGGTTTGTATTATGTAACA GATTGACAGGATGAGGATGAGTATGCTATACAGTATTGGTTTTTTGGGTGCTTTTTAGAAAATTACAGAATATCTCTATTGGTTTACAATTATGTGGTTG GCG
• Tissue: pods
• Gene name: LI_gene_195013;
• Additional information: details;

Expression of Ll_transcript_479612

FPKM

• PAB: 0
• PNAB: 0.5
• PS1: 0.2
• PS2: 0
• PS3: 0.2
• PW1: 0.3
• PW2: 0.1
• PW3: 0

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_479612

• Blastp: Pentatricopeptide repeat-containing protein At4g38010 from Arabidopsis with 54.21% of identity
• Blastx: Pentatricopeptide repeat-containing protein At4g38010 from Arabidopsis with 54.41% of identity
• Eggnog: Pentatricopeptide repeat-containing protein(ENOG410Z7Z7)
• Kegg: Link to kegg annotations (AT4G38010)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019442160.1)
• Pfam: PPR repeat (PF01535.19)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;