| Id Trinity | TRINITY_DN52727_c6_g1_i10 |
|---|---|
| Name Transcript | Ll_transcript_479575 |
| Sequence | AAAAGAACCATGTTTTTATACAAACATTACAATAGGAAACTTAGCCTCACAAATTAAACAAAAAGGTTAAGTTTTCAAAAATGTTGCGTCATCTAATTGG TTGGACTTGTATTGTACAATTAACCTCTATTCATAGGAAGGGGAGAGGAAAGTAGAGAGAGTGGTGCATGGACTTGTAAAGTAAACCATTAGGGTCAACC AAACGCGTGGAAGGTGATGTTGGGTCAAAGATATTACTCTTGGAAAATAGATAGATACACATGTGGTAGTGAACATAACAGAAACACTGCAAGATGTCCA AAATTATTCTATCTTCACCTTCACCAACCCTTTTTCCCTTAACCCTTTTCTTCATCCTCCTCCTCCTACTACACCCATGTGAAGCTGAAGATGTTGCCAT TTACTGGGGTCAAAATGTGAAGGAGGGAAACCTTACTGAAACTTGTGCAACAGCAAAATATTCCTTCATCAATATAGCTTTTCTTACCACTTTTGGCAGC AGCAAAACCCCCCAACTCAACCTTGCAGGTCATTGTGACCCTTCTACTAATGGATGCACTTTGATTGGGAGAGACATCATGAATTGCCAAAATCAAGGGA TCAAGGTCATGCTCTCTATTGGAGGAGGATCTGAAGGCTCCTATGCTCTAACTTCTTCAGAAGATGCTAAAAATGTGTCAGATTACTTATGGAACAATTT CTTGGGTGGCACTAATTACACTTCTTCACGCCCTTTTGGAGATGCTATATTAGATGGCATAGATTTTGACATATATGGAACTAATTCACACTGGGATGAA CTTGCACGTTACCTCAAGTCACACAACAATAACACAACTACAAAAACTATATACTTAACTGCTGCACCTCAGTGTACATTTCCTGATTATTCAATGGGTA CTGCCCTTGACACAGGGCTCTTTGACTATGTCTGGATACAATTCTACAACAATCCTCCATGTGATTATGGTAAAGAAAGTATTGACAACATTGTGAATGC ATGGAACAAGTGGACAACATCATTAAAAGGAGCAAAAGTATTTCTCGGGCTACCAGCAGATCCAGCAGCTGCGGCAACAGGTTATGTTCCACCTGATGTT TTAGAATCTAAGGTCTTACCTATGATAAATAAGTCACCAAATTATGGAGGTTTAATGTTGTGGTCAAGGTACTATGATAAAATGAGTGGATATAGTACTG ACATTCAGATAAATGTTTTATGCACACAGCAAAGCATTAACACATGCAGGAGTCATGACAGTGGCTTCACACAACGTTATGGTTTTGTGTCCATAGCTGG TGTTAAGGTTTATGATGGTGATAAGAACATTGATGCAAAGTGCTGTGAGATCATATGTTGGAATAACTGTTCTTGCGAAGCTTACGCGCTAGTGAATCAT AATAACAACACTGGATGCCAGATATGGGGAAAAGGAGCGAGATTGATTAGAGATTCTGGAGAAAAGGGAGAGCCAATGATGCAAATCTACTTTGTTAAAC ACAAAGTGAACAGGTGGTGGATATGGCTCATAATTGGTGTTGGAGGAGCCCTTTCATTACCTGTGATCTTCTATTTATGCTATACCATCTGGAAAAAATA TAAAGCAAAAGTGGATAGAAAAATGATGAAGAAGAAGTTATTACATGAGATTGGAGGTAATGCAATGCTTTCGATGGTGTACGGAAAAGCCAGGAAAAGA AAGAACAAGGAAAAGACAAACAATGAGGTGGAAATATTTAGTTTTGAAACCATTGTTGCTGCCACAAACAATTTCTCTGTTGCTAATAAGCTAGGAGAGG GTGGTTTTGGTCCTGTTTATAAGGGAACTTTAAGTGATCAGCAAGAGGTAGCAATAAAGAGACTTTCTAAAAGTTCAGGGCAAGGGCTGATAGAGTTTAA GAATGAAGCTAAACTCATGGCTAAACTGCAACACACTAATCTTGTAAAGCTTTTAGGATTTTGCATCGAGAGAGATGAAAGAGTACTAGTTTATGAGTAC ATGTTGAATAAGAGCTTAGACTTCTACCTATTTGATTCAACTAGAAGGAATTTGCTAGACTGGGGAAAACGCTTGAACATCATTGGAGGCATTGCTCAAG GACTTCTTTATCTTCACAAGTATTCAAGGCTAAAGGTGATACACCGGGACCTGAAAGCAGGCAACATATTACTTGATGAAGAGTTGAATCCTAAAATATC TGATTTTGGCATGGCTCGAATATTTGGTCATAGAGGATCAGAAGAAAACACAAATAGAGTTGTTGGTACATACGGCTACATGTCTCCTGAGTATGCAATG AATGGTGTTGTGTCAATCAAAACAGATGTATTCAGCTTTGGTGTATTACTATTAGAGATTCTAAGTGGTAAGAAGAATAATAGTCGCTATCATCCCGACC GTCCACTGAGCCTCATAGGACATGTAAGTTTTCTAAATTGACTAAACAACAATCAAGACTTAATCTTACTTGGTAGAGTCGGCTATTTCCCAATACTGAC TGATTCATAAAATTCATGCTTATCAATGGTTCATAACTTTTATGCCGATGCTCGGATTGTTGTAGGCCTGGCAGCTGTGGAATGAAGGCAGAGCTCCTGA CCTAATAGACCCAGCATTTAATGAGTCAAGTAATGAGAATGAAGTTGTGAGATGTATTCACATTGGTCTATTGTGTGTACAAGATCAGGCAACAGATAGA CCTACAATGTTAGAGGTTGTTTCTTTTCTATCAAATGAAACAATCAAACTCCCCCAACCAAAGCAGCCAGCATTCTTCATCAATGTTGCTGTGGAAGAGT CAGAGATTCCTAACAGTAGGCAAGAATATCATACCTTAAATGATGTAACAATTTCTAGTATGTATGGCAGATAGAATATTATTATTTTGACACCAAAAAA TATTAGATAATTTTGCATAGTACTTACTTTATTCAGCTTACACAATTATTGGCTACAAGTTTTGTTTTGTGAAGCAAATACAAAGTGTGTATGCATTGGA AAAGAGGTGGTGATGTCACACACAGCCTAGCAAACAAACCATGTTACTTGCAGCCATTGTTAACAAATTCTATCATACCACGACACACGACATAAACGCA GATCTCTGCAACTATCCTACTTGATAAGGGCCATGTTTCCAAAACATATGTATAAAACAAAAATAATAATTGTTCTTTGTGTATATCAATTCTTCCCCTC TACTTGAAATTTTAAATCTTAATCAAATTTATTTTATCTCTAATAACAAAGTAAAATCTTTATTCAATAGCTAATGTTTTCCACGTGTAAAAGATTAAGT GGTCCAAGTGTGTTTTACTTCCCCTTCTAGCATCCGAATCTGATCATAGTGGGACTAATAACAAAACAGAACTCATTTGTGTTGTGTCTTTGTTTCATAA TAGAAAGACAGTTAAGTGGTACAAGTTTACAGTTACCTCTATAGTTAGCAACTAAAAAACATGTTATTGTGATGTTAGTGTTGTGTGATAGAGGAAGGTG GTGAAAATGGATTTTTGGCCAGAATATCTTGCAAGAAGTTGGGGGAGCGAATTTGTAGCAGGAGGAATTGGAGGAACTGCTGGTATAGTATCAGGATACC CATTAGATGGAGGTAAGGAAGAAATGGGAGAGAACCAGTTCGCTAGAGAACCACGAATCGGTTCGTTCGAACTGATTCGCGGTTCTCTGTGAAGTTGAGC GAATCTTGTTTCTATGATTGTAATTGACTACAAATGAAGTTATTATTTTTGTTTTCTTTTACTGCAGAATGCTATGGTTTTCCAAATTTATGCAGTTCTG TCTAAGGCATTTTGCACATCTGTTTCTTCTAATGACCCTCCTTCGTTGAAGGGTGTTGCCTTAGGAGGAGTTGGAACAAGTGCCTTCCAAAGTCTATTGC TTTCCCCTGTAGAGTTGGTGAAAATTCGCCTTCAACTGCAGAGCACGGGCCAATCTTCGGCATCCGAAAAGGGTCCTGTAAAGGTTGCTAAGAACATATG GAAAAATGAGGGACTTCGCAGAATTTATAGAGGACTAGACATTACTATGCTCAGAGATGCACCTGCATATGGTTTATACTTTATACTTCTGGACTTATGA GTACACTAGAGAAAACTTCACCCAGGTTGCAGAAAAAGTAGTGAAGAAAGCTTGAATACTATGTTAGTAGCAGGAGGATTAGCCGGTTTATCGAGTTGGA TTTTCAGCTACCCTTTGGATGTTATAAAGACAAGGTTACAGGCTGAAACACCTTGTTCACAGAAATATAAAGGCATTTTGGATTGCCTCAGAAATAGCAT CAAAGAAGAAGGATACAATGTGCTATGGAGGGGTTTAGGAACTGCAGTTTCTAGAGCTTTTGTAGTTAATGGTGCTGTGTTTTGTGCTTATGAGATTACT CTAAGGTGTTTGTTTAACAATTCAAGCATCCAAATATAGGATTCAACAAAGGAGCATTACTCTTCCCAATGTTTTTTAGGAGAGACATGATAAAGTATAA CAAAAAGGCTTTGATATGAGACAATCATTACTTGATGTGGAAGCCAAAACAAAAAATTCTTGTTGCTAAAGTGGTAATGTAAAGGGTCAAAACATCCAAC AGAGTAAATCCAACATAGATGATTGAAGGTCTTTGTACAACTGATTCTGTTCAATATCACTATAGCTTGCTCCTTTTTTCTTTGATTTCTTTTATTGTCT AAACCATCAACAGTTAGACCCTTCACATTTTGAAGTATTATTGTAATACAAGTTATTAATGGAAACAGACATTGGCCA BLAST |
| Tissue | pods |
| Gene name | LI_gene_195071; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_479575
| Blastp | Acidic endochitinase from Vitis with 58.68% of identity |
|---|---|
| Blastx | Hevamine-A from Hevea with 63.9% of identity |
| Eggnog | - |
| Kegg | Link to kegg annotations (100233088) |
| CantataDB | Link to cantataDB annotations (CNT0001079) |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019458283.1) |
| Pfam | Glycosyl hydrolases family 18 (PF00704.27) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |