Ll_transcript_479010

• Id Trinity: TRINITY_DN52755_c3_g1_i1
• Name Transcript: Ll_transcript_479010
• Sequence: CATCCATTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACCCACCTTTCTTGTCCTGAAAGTTGTTCTCTCTCTCATACCTTTCTTGTCC TCAAAGTTGTTTCCAATCTCTCACTATCTCTCTCTCTCTCTCTCTCTATATATACTCACACTCATGACTCATTCTCTATAATTACTACCAAAACCTTCAT TTTTCTACATTCCAAAAATGCATCTCTACAATGCATGGCTTCCACCGCCTGTCGCCGCCCAAACCGCCGCCGAGAGAGACTCCTTCCACCGCCGAGTCTT AACTCTCAACTCCTCCTACCGCTCTGATGATCCCGATTCCGTTTATTCTACTCTCAAACAAATCTCTGTTCTTGACCTTTTCGTGAAGGCGAAAAGTGAT GTATCTTTAGAAGATGTCCATTCCCTTATTCAGACGGGTCTTGAATTGTTTCACTTGTCCCGTAATAAGCTGTATGCGCAGGTTAGATGGGGAAATTTGT TAGTCAGACTTCTCAACAGGTATCGGAAAAAGGTTGCATTGACTATTGAGTGGCGGCCTTTGTACGATACACTGATTAGCACACATTTTACCAGAAGTAC TGGTCCAGAAGGTTGGAGAATAAGACAGCGACATTTTGAAACTATAACTTCCCTTGTTCAATCTTGCCGGAAGTTCTTCCCATCAGGTTCTGCCTTTGAG ATATGGTCTGAGTTTAAGTGAGTGCTCTGGTATTATATCTGCATAATGGAAAAAATGAATTATTATGAGTGTTCTTATTTCTATGTTTTTATATATTTTA TCCTTTATCTTGATGCTGAGCTAAACTAAAATGAACTATCTATAGTTCCATTTAATGGAATTATTATTGACCCACAATAGGCTATTGCCAAATCAATTGT AAGCAAATGTGCCATGGCTAATATTTGATTTAATATTTGTTCTTATTAATGCCTTTTCTTTTGGCCAATGGATAATTTGTAGATCTTTATTGCAAAACCC ATGGCATAATTCAACTTTCGAAGGATCTGGGTTTGCAAGACTGTTTCTCCCAATAAATTTGGACAATCAGGCCTTTTTTACACATGATTGGATAAAAGAG TGTATGGAGTTGTGGAAATCTATACCAAATTGCCAATTCTGGAACAGTCAATGGGCCGATGTTATAGCTCGAGTTGTAAAACAATACCATAATGTTGACT GGGAGTGCTTTTTGCCTTTGCTTTTTTCTAGATACTTGAATATGTTTGAGGTTCCTGTTGCAAATGGAAGTGGATCATATCCCTATTCACTGGATGTCCC AAGATACACGAGGTTTTTGTTCTCTAATAAAACTGCCACCCCATCAAAGGCTATTGCCAAATCAATTGTGTATTTACTAAAACCTGGTAGTTCAGCACAA CAGCACTTTGAGAAGTTGGTCAACATTTTGGAACAATACTATCACCCCTCAAATGGTGGTCGCTGGACTTACTCATTGGAGCGGTTTTTGTTCCATGTGG TGATTCAATTTCAGAAGCGTCTACAGAATGAACAGTTGAGCATAAATAATAGCAGACCTGCTGAACAGCATCTTGGGGAATCAGAGAGGGTTTTCTTTGT TAATTCAGTACTAAAGTTAATTGATCGGGGTCAATACAGCAAGAATGAGCATCTCTCCGAGACAGTTGCTGCAGCAACTTCCATATTGTCCTATGTGGAA CCCTCATTGGTTCTGCCATTTGTGGCATCTCGGTTTCGTATGGCCCTTGAGACGATGACTGCCATCCACCAGTTGAAAGTTGCAGTTATGTCAGTGGCAT TTGTTGGGCGTTCATTATTTTTTACATCTTTATCCGCTTCTTCCATGAAATCACTTGATCTTGGTGGTGGTGATGAGGCATTCATTGATCTTGTGGGGCT TTCATTATCCAATGCATTACTTGGCATGGATGCTAATGACCCTCCAAAAACCATGGCTACCATGCAATTGATTGGTTCCATTTTTTCAAATATGGCTTTA TTGGATGATAACATTGATGACTTATCATTTATGCCAATGATCCGCTTTTCTGAATGGTTGGATGAGTTCTTATGCCGTCTGTTTTCCTTACTTCTACACT TGGAACCCAGCAGTGTTGTAAATGAAGGTCTGCAGTCGTCAGCTGCTTCAGGAACTTTTCTGGTTAATGAGGGTCCATACTACTTTTGTGTGCTTGAGAT TCTTCTTGGGAGGCTGTCAACATCACTGTATAACCAGGCTTTGAAGAAAATTTCCAAGTTTGTGAGGACAAATATTCTTCCGGGTGCTATTGCAGAGGTT GGACTGCTCTGTTGTGCATGCCTTCACTCACACCCAGAAGCAGCAGTTAGTCAAATTGTCGAACCAATATTAGTTTCCGTGATATCCTCTTTGAAAGGAA TACCACGGACTGGGTTTGGAGGGGGAGGAACTTTCGAGGCTTGTGCTTCAACAAAGGTTAAATCAACGATTTCACCAGCTCTTGAAGCGGCAATTGACTA TCAACTAAAGATATTATCAGTTGGCATCACATATGGAGGCCCAGCACTCCTACGCTACAAGGATCAATTCAAAGAAGCTATCTTCTTGGCTTTTGACTCA CCATCTTGGAAGGTTAATGGGGCAGCTGATCATCTTCATCGATCCCTCCTTGGAAGTCAGATTCATTATTATCCAATAGATCAGTATAAGTGTGTTCTTA ATCACCCTGATGCAGCTGCTCTAGAGGAATGGATTAGCACAAAAGACTTTTCCACTGATGATAGATTGATCCCAAAGTGGCATATTCCTTCTGATGAAGA AGTTCAGTTTGTTAACGAGCTTTTAGACATTCACTTTAATTCAGCTTTGGATGATCTGTTGAAAATATGTCAGTCTAAAATCCATGTTGACCAAGGAGAT GAGAAAGAGCACTTGAAAGTGACTCTTTTACGTATTGAATCAACTTTGCAAGGACTTTTTTCTTGCTTGCCTGATTTTGTCCCTGGCTCTAGGAATGGAA TGGTTGAAGATTCAAACAATACATTTCTAATTGCTGGAGCAACAGGTTGTACTGTTGGTAGTACTGCTCTGCGAGAAAAAGCTACTGAGATTGTACATGC AGCCTGCAAACATGTCCTTGAGAAAAATTCAGATGACAGCATCCTGTTGATACTCATTATTCGTATTATGGATGCTTTAGGAAATTATGGAAGTTTGGAA TATGATGAGTGGTCTAGTCACAGGCACTCTTGGAAGTTGGAATCTGCTGCCATAATAGAACCTCCAATTAATTTCATTGTGTCATCTCATTCTAAAGGAA AGAAAAGACCTAGGTGGGCTCTTATCGACAAAGCATTCATGCACAATACCTGGAGATCTTCACAAGCAACCTATCATCTTTACCGTACGAGTGGAAATTT CTTTCCATCAGATCATGTGACTCTTTTGATGGATGATTTATTGAGTCTCTGTTTGCACAGTTATGAAACTGTCCGCCTACTTGCTGGAAAAGCTCTAGTA AAGCTGATCAAGAAGTGGCCATCGATGATTTCAAAGTGTGTTATCACCCTTACCCATAACTTGCAGGACCCCAATGCAAAGGAATATGCAGTGCTGGGTT CTTGTTCAGTCCTATCCTCACAAGCAGTTCTCAAGCATTTGACAACGGTGATTTTCAAGGATCATGTTCTTAAAATTGTCTTTATGGTGTCTCTTACATA TTTTCAAACACTTGTTCAGCCAATACTTTTGTGGCTCTTACATACTCTCTCTTTGATTTAGGATCCAAAATCTTTTTCTTCATTTATCTTGGCGATTCTT TCAAGTTCTCATCATGA
• Tissue: pods
• Gene name: LI_gene_195306;
• Additional information: details;

Expression of Ll_transcript_479010

FPKM

• PAB: 0.2
• PNAB: 1.2
• PS1: 1.6
• PS2: 0.9
• PS3: 1
• PW1: 0.6
• PW2: 1.1
• PW3: 1

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_479010

• Blastp: Proteasome activator subunit 4 from Arabidopsis with 72.89% of identity
• Blastx: Proteasome activator subunit 4 from Arabidopsis with 72.46% of identity
• Eggnog: Proteasome (Prosome, macropain) activator subunit 4(ENOG410XP7J)
• Kegg: Link to kegg annotations (AT3G13330)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019425529.1)
• Pfam: Proteasome-substrate-size regulator, mid region (PF16507.4)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;