Ll_transcript_479017

• Id Trinity: TRINITY_DN52755_c3_g1_i7
• Name Transcript: Ll_transcript_479017
• Sequence: CATCCATTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACCCACCTTTCTTGTCCTGAAAGTTGTTCTCTCTCTCATACCTTTCTTGTCC TCAAAGTTGTTTCCAATCTCTCACTATCTCTCTCTCTCTCTCTCTCTATATATACTCACACTCATGACTCATTCTCTATAATTACTACCAAAACCTTCAT TTTTCTACATTCCAAAAATGCATCTCTACAATGCATGGCTTCCACCGCCTGTCGCCGCCCAAACCGCCGCCGAGAGAGACTCCTTCCACCGCCGAGTCTT AACTCTCAACTCCTCCTACCGCTCTGATGATCCCGATTCCGTTTATTCTACTCTCAAACAAATCTCTGTTCTTGACCTTTTCGTGAAGGCGAAAAGTGAT GTATCTTTAGAAGATGTCCATTCCCTTATTCAGACGGGTCTTGAATTGTTTCACTTGTCCCGTAATAAGCTGTATGCGCAGGTTAGATGGGGAAATTTGT TAGTCAGACTTCTCAACAGGTATCGGAAAAAGGTTGCATTGACTATTGAGTGGCGGCCTTTGTACGATACACTGATTAGCACACATTTTACCAGAAGTAC TGGTCCAGAAGGTTGGAGAATAAGACAGCGACATTTTGAAACTATAACTTCCCTTGTTCAATCTTGCCGGAAGTTCTTCCCATCAGGTTCTGCCTTTGAG ATATGGTCTGAGTTTAAATCTTTATTGCAAAACCCATGGCATAATTCAACTTTCGAAGGATCTGGGTTTGCAAGACTGTTTCTCCCAATAAATTTGGACA ATCAGGCCTTTTTTACACATGATTGGATAAAAGAGTGTATGGAGTTGTGGAAATCTATACCAAATTGCCAATTCTGGAACAGTCAATGGGCCGATGTTAT AGCTCGAGTTGTAAAACAATACCATAATGTTGACTGGGAGTGCTTTTTGCCTTTGCTTTTTTCTAGATACTTGAATATGTTTGAGGTTCCTGTTGCAAAT GGAAGTGGATCATATCCCTATTCACTGGATGTCCCGAGATACACAAGGTTCTTGTTCTCTAATAAAACTGCCACCCCATCAAAGGCTACTGCTAAATCAA TTGTGTATTTACTAAAACCTGGTAGTTCAGCACAACAGCACTTTGAGAAGTTGGTCAACATTTTGGAACAATACTATCACCCCTCAAATGGTGGTCGCTG GACTTACTCATTGGAGCGGTTTTTGTTCCATGTGGTGATTCAATTTCAGAAGCGTCTACAGAATGAACAGTTGAGCATAAATAATAGCAGACCTGCTGAA CAACATCTTGGGGAATCAGAGAGGGTTTTCTTTGTTACTTCGGTGCTGAAGTTAATTGATCGTGGTCAATACAGCAAGAATGAGCATCTCTCCGAGACAG TTGCTGCAGCAACTTCCATATTGTCCTATGTGGAACCCTCATTGGTTCTGCCATTTGTGGCATCTCGGTTTCGTATGGCCCTTGAGACGATGACTGCCAT CCACCAGTTGAAAGTTGCAGTTATGTCAGTGGCATTTGTTGGGCGTTCATTATTTTTTACATCTTTATCCGCTTCTTCCATGAAATCACTTGATCTTGGT GGTGGTGATGAGGCATTCATTGATCTTGTGGGGCTTTCATTATCCAATGCATTACTTGGCATGGATGCTAATGACCCTCCAAAAACCATGGCTACCATGC AATTGATTGGTTCCATTTTTTCAAATATGGCTTTATTGGATGATAACATTGATGACTTATCATTTATGCCAATGATCCGCTTTTCTGAATGGTTGGATGA GTTCTTATGCCGTCTGTTTTCCTTACTTCTACACTTGGAACCCAGCAGTGTTGTAAATGAAGGTCTGCAGTCGTCAGCTGCTTCAGGAACTTTTCTGGTT AATGAGGGTCCATACTACTTTTGTGTGCTTGAGATTCTTCTTGGGAGGCTGTCAACATCACTGTATAACCAGGCTTTGAAGAAAATTTCCAAGTTTGTGA GGACAAATATTCTTCCGGGTGCTATTGCAGAGGTTGGACTGCTCTGTTGTGCATGCCTTCACTCACACCCAGAAGCAGCAGTTAGTCAAATTGTCGAACC AATATTAGTTTCCGTGATATCCTCTTTGAAAGGAATACCACGGACTGGGTTTGGAGGGGGAGGAACTTTCGAGGCTTGTGCTTCAACAAAGGTTAAATCA ACGATTTCACCAGCTCTTGAAGCGGCAATTGACTATCAACTAAAGATATTATCAGTTGGCATCACATATGGAGGCCCAGCACTCCTACGCTACAAGGATC AATTCAAAGAAGCTATCTTCTTGGCTTTTGACTCACCATCTTGGAAGGTTAATGGGGCAGCTGATCATCTTCATCGATCCCTCCTTGGAAGTCAGATTCA TTATTATCCAATAGATCAGTATAAGTGTGTTCTTAATCACCCTGATGCAGCTGCTCTAGAGGAATGGATTAGCACAAAAGACTTTTCCACTGATGATAGA TTGATCCCAAAGTGGCATATTCCTTCTGATGAAGAAGTTCAGTTTGTTAACGAGCTTTTAGACATTCACTTTAATTCAGCTTTGGATGATCTGTTGAAAA TATGTCAGTCTAAAATCCATGTTGACCAAGGAGATGAGAAAGAGCACTTGAAAGTGACTCTTTTACGTATTGAATCAACTTTGCAAGGACTTTTTTCTTG CTTGCCTGATTTTGTCCCTGGCTCTAGGAATGGAATGGTTGAAGATTCAAACAATACATTTCTAATTGCTGGAGCAACAGGTTGTACTGTTGGTAGTACT GCTCTGCGAGAAAAAGCTACTGAGATTGTACATGCAGCCTGCAAACATGTCCTTGAGAAAAATTCAGATGACAGCATCCTGTTGATACTCATTATTCGTA TTATGGATGCTTTAGGAAATTATGGAAGTTTGGAATATGATGAGTGGTCTAGTCACAGGCACTCTTGGAAGTTGGAATCTGCTGCCATAATAGAACCTCC AATTAATTTCATTGTGTCATCTCATTCTAAAGGAAAGAAAAGACCTAGGTGGGCTCTTATCGACAAAGCATTCATGCACAATACCTGGAGATCTTCACAA GCAACCTATCATCTTTACCGTACGAGTGGAAATTTCTTTCCATCAGATCATGTGACTCTTTTGATGGATGATTTATTGAGTCTCTGTTTGCACAGTTATG AAACTGTCCGCCTACTTGCTGGAAAAGCTCTAGTAAAGCTGATCAAGAAGTGGCCATCGATGATTTCAAAGTGTGTTATCACCCTTACCCATAACTTGCA GGACCCCAATGCAAAGGAATATGCAGTGCTGGGTTCTTGTTCAGTCCTATCCTCACAAGCAGTTCTCAAGCATTTGACAACGGATCCAAAATCTTTTTCT TCATTTATCTTGGCGATTCTTTCAAGTTCTCATCATGAATCCTTGAAAGCTCAGAAAGCAATTAATGAGCTTTTTGTAAAGTACAACATCCAATTTTCTG GAGTATCTAGAAGCTTTTTCCAGATATCAGACAAAGACAGTCATACTGGTGGGCTGGCTTTCTCAGATTTGGTTTCCCAGATTGTCTCTATGAGCTTTGA TTCTACTGGCTTGCATTGGCGGTATAATTTAATGGCTAACAGAGTTCTGCTCTTGCTGGCTTTGGCTTCTCGGAACCACCCAAATTCATCACCTAAAATT CTGAGTGAAACTGCTGGACACTTTTTGAAAAATTTGAAAAGTCAACTTCCTCAGACAAGGATACTTGCAATTTCGGCTCTGAATACGCTATTAAAGGAAT CACCTTATAAGCTGTCTCCTGTTGAGAAATCTGCTTTACTTGAGGATTTACAAGGCAATTCCAAGTCATCCCTTGAAGGAGCTTTAACTAGAGCTTTTCA GGAAGAGGGTTTTTTCAATGAGACACTAACTAGTCTATCTCATGTTCATATAATAACTGATACTGAAACTGCTACTAGAGGAAATCAAGGAGATTCCAGT TTCCAAAGCTTAGCAGACAAATCTATAACCCGCTTCTATTTTGAGTTTTCGTCTTCATGGCCACGCACACCCAGTTGGATATCCTTTTTAGGAAGTGATA CATTCTACTCAAGCTTTGCACGTATTTTCAAGCGGCTAGTACAAGAATGTGGCATGCCTGTAGTATTGGCTCTTAAAGATGCAGTAGATGAGTTTATGAC TGCTAAGGAGAGGTCTAAACAATGTGTCGCTGCTGAAGCATTGGCAGGTGTGTTACATTCTGATATTGATGGTCTATCAGGAGCATGGGAAGGTTGGCTG ATGCCCCAGTTGAAGAATATCATTTTAGCTCAATCTGTTGAATCAGTTTCTGAGTGGGCCAATTGCATTCGATATGCAGTCACCGGTAAAGGAAAGCATG GAACAAGAGTACCTCTTTTAAGGCAGAAAATTCTGGATTCTTTGATGACACCTTTACCTCCAACAGTAGCTACCACTATAACAGCGAAACGATATGCTTT TCTGGCAGCTGCACTCATAGAAATATCCCCACAAAAAATGCCAGCAGCTGAAACGCAGATCCACAATACCCTTCTGAAGGAAGTTCTTGGTAGTATGTGT CACTCATCAGCCCAAGTACGGGAAGCTCTTGGTGTTACCCTTTCTGTGTTGTGCTCTAACCTTCGGCTATATCATTCAAGTTGTAATCATATTGATAATG GGAGAAACAACAATGTTGATGATTTAATGAAAGATGAAAGCTGGGTTCAGTTCCTTACAGAGCGAGCAGCTGAAGCTGTTGTGAACATTCAGATTGCTAC CCAATCAGACAAAGTAGCGAATCCCATAGATACAAGTTCTCAAAATGGGCATTCTGATGGTGATTCACAAGATGACATGAAATGGATGGAAACGGTACTC TACTTCATAATCTCATCATTGAAGTCTGGGAGATCCTCATACCTAGTCGACGTGATTGTGGAGCTTCTCTATCCTGTGATTTCCTTGCAGGAAACATCAA ATAAAGATTTGTCAACATTAGCCAAGGCA
• Tissue: pods
• Gene name: LI_gene_195306;
• Additional information: details;

Expression of Ll_transcript_479017

FPKM

• PAB: 0.7
• PNAB: 5.8
• PS1: 5.7
• PS2: 3.6
• PS3: 4.9
• PW1: 2.3
• PW2: 3.6
• PW3: 2.2

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_479017

• Blastp: Proteasome activator subunit 4 from Arabidopsis with 69.13% of identity
• Blastx: Proteasome activator subunit 4 from Arabidopsis with 69.13% of identity
• Eggnog: Proteasome (Prosome, macropain) activator subunit 4(ENOG410XP7J)
• Kegg: Link to kegg annotations (AT3G13330)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019425529.1)
• Pfam: Proteasome-substrate-size regulator, mid region (PF16507.4)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;