Ll_transcript_479858

• Id Trinity: TRINITY_DN52761_c3_g3_i2
• Name Transcript: Ll_transcript_479858
• Sequence: CAAAACCGGACTGAAACGAAAAGTAAATTCGGAAGCACAGATACTCTTTATTGATAGAATCATCAGCGAAGACCCCTTTCTCTTTCTTCGCCAAAATCAC TCGCTTCACTCTAGGGTTTCTCTCTCTCTCTCTACAAGCTCTGTTATCACTTCTCACTCACTCAGAACACTGCATTAATCAAATAAAAGCATCACAGCAT TGGCAAGCGGGATGAGTGGAAGTGCTAGAAAGCGCTCTTCAAAGTGGGATATGAGAGATGGCCATGAATTTGCACCTGATAGTAAGCAATTGCGTTCTTA TTTGGAAGGAAATGATAAGTCAAAGTCTGGTATGGGGTTTTCATCCAAGGAACCTTTTTCTCGAGGCAGAGGTTCAAATAAGGATGATATTATGAATAAT AAAGACTATAGAGATTGGGTTGAAACAATGGAATGGGATGCTGATGGAAGTTACAACAATAAACTTTCTCCTGGGTTTGAGGAACGAAAATATAAGAGAC GTAGTCAATCCCCGAAAAATGGTCGGAGCATGTCAGTCAGGAGTAGTCGGAGCAGGAGCCCTCCCCATGGTTTTAGGCGGGATTCAGGATTCAGTGACAT AAATAGAACGAGGGCTGGAGGATCATTACAACCATGTAGAGAGTTTGCTGCTGGTAAATGCAGAAGAGGCAGCAATTGCCATTTTCTTCACCATGATAAT CAAAATTATGAGGATAGTTTGGAAAGTAAACATAGGGAAGATGATGCTCCCAAATATTATGGTCCCCATGACAGTAGAGACCATTCTCATAGGAGTGGTA GATCTAATGAAGCTTGCGTTAATTTTGCTAAAGGCAGATGTAGAATGGGATCATCATGTAACTTTGTGCATAACAGTTCTGGTGGATACAGTAAAGGTTC TGTGGATGAATCAACTAGAGAAAGGGAAAATGATAGAAGACGCAGAGATAATTCTTTTGATCAGGTTGGTGGACTTGGGCCCAACCGTAGTGGTCCTACT CCTTGCAAATTTTTTGCTAACGGAAACTGCCGCAATGCTGGACATTGTAGGTTTTCTCATGATAGGCAAGCATATGGTAGCTCTCCTAATAGAAGATCAA GGGATGATAAGTGGGGGAGCAATCTGGGTGGAGATCATCAGACATTGGATAGACGAGAATTGATTGATTCAGTTAGTCCTACTGGAAGACTAAGAGATAA TAGATGGGGTTCAGATGGCAATATGGTAGACAAGGACAATCCAAAACCGAATGATACAGTTGCTGTGTCTGATACATCAAAGCTGGTTGAGGACAAATGT GGAAATATAGGTGCCTCAGATCCTGGATTTACTCCTTGGCCTAGAAAGGAGGGATGGGGTCATGCTTTATATAAGAACAGAGAGCATAGTGAACTAACAT TTTCGAGTGATAAGGAAACTGGCTATTGGATGGCAGAAAATGCTGGTGCCAACAGGCACGTTCCCCAGCCAGCAGGTACAGGCAATTGGTCTGGTGATGA AATGTCTCCTGATTGGAATTACAGGGTGGGATCTTCTAGTCATATTGAAGAAGAGCATGGACAGAATAAGCATGGGATAACCCAGGGTGGTACATATTTA GCCACTGAACGTGAAAGAACACAATTTATTCCAGGGCAAGCCTTGAATCAGAACGCACAGAATATAAATCCTTCACATTCTTCAAGCGGTCATGGAGTTG GACAAAGTCAAGTGGATGTTCCCAATCTCCCTTCAAGAGGAGTTGTTGAAAGTATGCATAACCAACAAGTTTCTGCTGATCTTCAGGAGCAGGGCTTTAA TAAGAATTCACAGAATCCAAATCTAAATCCAAGCAGCCATGCAGTTGGACAAAGTCAAGTGGCTGTTCCCGGTCTTCCTTCAAGAGGAGTAGATGAAAGT ATGGGTAACCAACAAGTTTCTTATGATGTTCCCTCAGGGAAAGGGTTTAACTACAATCCACAGAATATAAATCCTTTTTATTCTTCAGGTGGCCATGCAG TTGGACAAAGTCAAGTTGCTGCTCCCATTCTTCATTCAATTGAAAGTATGCATAAGCAAGTTTTGAATGATGTTCTTCCAGGGAAAGTCTTTAATTACAA TGCACAAAATATAAATCCTTTGCATTCTTCAAGTGGGCATTCAGTTGGGCAAAGTCAAGTTGCTATTCCAATTCTTCCTTCAAGAGGAATTACTGAAAGT ATGCATAACCAAGAAGTCTCTGCTGAGAAAAAGTACACTGTTGAACCAAATGTCACGGTTGAAGGCTTATCACAAGTTAGTTCAAGAAATCCTCCTACTA AAAATATGGTAAGCAATGAACAGCTTACTCAGTTTAGCAGTCTCTCAGCCTCTCTGGCTCATATCCTTGGAACAGGTCAGCAACTGCCACAACTTTATGC TGCTTTAAATTCTAATGATGCAAAGGATACTTCCTCATTAGCCAAAACTGAAGTGCCAGCTATTCCTGTTTCCAATACATCCATCAAGCCAGATCCTGTG CTTGGATACAGGAAGCAGTATGATCCAATGTGTGATAGCATTGAAACAAAGAAAGTTGTTGCAAGTGGGGCTACCCCTGCCTTTTCTCCAAGTAAAAAGA AGGCAGAAGATAAAGTAGAATTTCAATCACAAGCGTCTAACTCAAGGAGACTAAATTGTGGCAACTCTTTTAAGGCTGCCTGCTCAGAAGAGCATTTAAT CCAGCTGCAGTCAGGTCGAAACCTTGAGTTTAATAAGGAGAAGAATGACGTGATAGTTGAGGAAAGGCAAAATTCGCCTGGTGATCATAAAAATACAAAA GAGAATGGTCCTTTGGAAAACATGGACCAAAAAGGTGGACCTGATGATGATAAGACATCAAAGGATGCAAAAGGGATTCGTACATTTAAATTTGCATTGG TTGACTTTGTTAAGGAGCTTCTGAAACCAGCATGGAAAGAAGGTCAAATTAACAAAGAAGATTATAAAGCAATTGTGAAGAAAGTTGTTGATAAAGTAAC TGGCACCATGCAGGGCACCAATGTTCCTCAGACGCAAGAGAAAATTGACCACTATTTGTCATTCTCTAAACCAAAACTTAGCAAACTCGTACAGGCTTAT GTGGAAAGGGTTCCGAAGGCTTAGCGCAAGTATAGAAATTTGTCTATCAAATCATTCTTGGTGTTATTGTCTTTATCTTGTACTATGTTTCATTTTCTCC AGAATCTTCTTTTTTGTGTGTCCTCTTATTCCTGTACTCCATTTTCTAGTAGAATCTAGTAGGCATTCCAGAATCCAGAGCTCGTGTACATACAATCTGC GGGCATTTCTTTCTTTTTCGACCTTTAGTTGTTTCTTCTGAGAAGAACTATTGGCTGTTTTGTGCCATTGGATATTAATCTTCAATTGGGATGCTAGGCA GTTGTTATGTGAGAGTCATTTTATTTTGTTAGTTTGTTGTGTAATTACCTGAGGAGTCATCTCTTTCCTTTTTGTAAAACAGAGTTCAGGACTTGTTAAA GAAGGTTGTGAGACTTATGTGCAGACTTTTAAACCTGTTTGTTCAGTTTTCTGACTCTGCAAAAAGTTCCAATGGTGATATTTGCAATTTACCTCCTAAA AAAAA
• Tissue: pods
• Gene name: LI_gene_195368;
• Additional information: details;

Expression of Ll_transcript_479858

FPKM

• PAB: 0.6
• PNAB: 3.5
• PS1: 3.5
• PS2: 2.9
• PS3: 4.8
• PW1: 2.2
• PW2: 3.3
• PW3: 2.4

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_479858

• Blastp: Zinc finger CCCH domain-containing protein 55 from Oryza sativa with 60.44% of identity
• Blastx: Zinc finger CCCH domain-containing protein 55 from Oryza sativa with 60.44% of identity
• Eggnog: zinc finger CCCH domain-containing protein(ENOG410ZKTI)
• Kegg: Link to kegg annotations (4344611)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019434518.1)
• Pfam: Zinc finger C-x8-C-x5-C-x3-H type (and similar) (PF00642.23)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;