Ll_transcript_479863

• Id Trinity: TRINITY_DN52761_c3_g3_i4
• Name Transcript: Ll_transcript_479863
• Sequence: CAAAACCGGACTGAAACGAAAAGTAAATTCGGAAGCACAGATACTCTTTATTGATAGAATCATCAGCGAAGACCCCTTTCTCTTTCTTCGCCAAAATCAC TCGCTTCACTCTAGGGTTTCTCTCTCTCTCTCTACAAGCTCTGTTATCACTTCTCACTCACTCAGAACACTGCATTAATCAAATAAAAGCATCACAGCAT TGGCAAGCGGGATGAGTGGAAGTGCTAGAAAGCGCTCTTCAAAGTGGGATATGAGAGATGGCCATGAATTTGCACCTGATAGTAAGCAATTGCGTTCTTA TTTGGAAGGAAATGATAAGTCAAAGTCTGGTATGGGGTTTTCATCCAAGGAACCTTTTTCTCGAGGCAGAGGTTCAAATAAGGATGATATTATGAATAAT AAAGACTATAGAGATTGGGTTGAAACAATGGAATGGGATGCTGATGGAAGTTACAACAATAAACTTTCTCCTGGGTTTGAGGAACGAAAATATAAGAGAC GTAGTCAATCCCCGAAAAATGGTCGGAGCATGTCAGTCAGGAGTAGTCGGAGCAGGAGCCCTCCCCATGGTTTTAGGCGGGATTCAGGATTCAGTGACAT AAATAGAACGAGGGCTGGAGGATCATTACAACCATGTAGAGAGTTTGCTGCTGGTAAATGCAGAAGAGGCAGCAATTGCCATTTTCTTCACCATGATAAT CAAAATTATGAGGATAGTTTGGAAAGTAAACATAGGGAAGATGATGCTCCCAAATATTATGGTCCCCATGACAGTAGAGACCATTCTCATAGGAGTGGTA GATCTAATGAAGCTTGCGTTAATTTTGCTAAAGGCAGATGTAGAATGGGATCATCATGTAACTTTGTGCATAACAGTTCTGGTGGATACAGTAAAGGTTC TGTGGATGAATCAACTAGAGAAAGGGAAAATGATAGAAGACGCAGAGATAATTCTTTTGATCAGGTTGGTGGACTTGGGCCCAACCGTAGTGGTCCTACT CCTTGCAAATTTTTTGCTAACGGAAACTGCCGCAATGCTGGACATTGTAGGTTTTCTCATGATAGGCAAGCATATGGTAGCTCTCCTAATAGAAGATCAA GGGATGATAAGTGGGGGAGCAATCTGGGTGGAGATCATCAGACATTGGATAGACGAGAATTGATTGATTCAGTTAGTCCTACTGGAAGACTAAGAGATAA TAGATGGGGTTCAGATGGCAATATGGTAGACAAGGACAATCCAAAACCGAATGATACAGTTGCTGTGTCTGATACATCAAAGCTGGTTGAGGACAAATGT GGAAATATAGGTGCCTCAGATCCTGGATTTACTCCTTGGCCTAGAAAGGAGGGATGGGGTCATGCTTTATATAAGAACAGAGAGCATAGTGAACTAACAT TTTCGAGTGATAAGGAAACTGGCTATTGGATGGCAGAAAATGCTGGTGCCAACAGGCACGTTCCCCAGCCAGCAGGTACAGGCAATTGGTCTGGTGATGA AATGTCTCCTGATTGGAATTACAGGGTGGGATCTTCTAGTCATATTGAAGAAGAGCATGGACAGAATAAGCATGGGATAACCCAGGGTGGTACATATTTA GCCACTGAACGTGAAAGAACACAATTTATTCCAGGGCAAGCCTTGAATCAGAACGCACAGAATATAAATCCTTCACATTCTTCAAGCGGTCATGGAGTTG GACAAAGTCAAGTGGATGTTCCCAATCTCCCTTCAAGAGGAGTTGTTGAAAGTATGCATAACCAACAAGTTTCTGCTGATCTTCAGGAGCAGGGCTTTAA TAAGAATTCACAGAATCCAAATCTAAATCCAAGCAGCCATGCAGTTGGACAAAGTCAAGTGGCTGTTCCCGGTCTTCCTTCAAGAGGAGTAGATGAAAGT GGCCATGCAGTTGGACAAAGTCAAGTTGCTGCTCCCATTCTTCATTCAATTGAAAGTATGCATAAGCAAGTTTTGAATGATGTTCTTCCAGGGAAAGTCT TTAATTACAATGCACAAAATATAAATCCTTTGCATTCTTCAAGTGGGCATTCAGTTGGGCAAAGTCAAGTTGCTATTCCAATTCTTCCTTCAAGAGGAAT TACTGAAAGTATGCATAACCAAGAAGTCTCTGCTGAGAAAAAGTACACTGTTGAACCAAATGTCACGGTTGAAGGCTTATCACAAGTTAGTTCAAGAAAT CCTCCTACTAAAAATATGGTAAGCAATGAACAGCTTACTCAGTTTAGCAGTCTCTCAGCCTCTCTGGCTCATATCCTTGGAACAGGTCAGCAACTGCCAC AACTTTATGCTGCTTTAAATTCTAATGATGCAAAGGATACTTCCTCATTAGCCAAAACTGAAGTGCCAGCTATTCCTGTTTCCAATACATCCATCAAGCC AGATCCTGTGCTTGGATACAGGAAGCAGTATGATCCAATGTGTGATAGCATTGAAACAAAGAAAGTTGTTGCAAGTGGGGCTACCCCTGCCTTTTCTCCA AGTAAAAAGAAGGCAGAAGATAAAGTAGAATTTCAATCACAAGCGTCTAACTCAAGGAGACTAAATTGTGGCAACTCTTTTAAGGCTGCCTGCTCAGAAG AGCATTTAATCCAGCTGCAGTCAGGTCGAAACCTTGAGTTTAATAAGGAGAAGAATGACGTGATAGTTGAGGAAAGGCAAAATTCGCCTGGTGATCATAA AAATACAAAAGAGAATGGTCCTTTGGAAAACATGGACCAAAAAGGTGGACCTGATGATGATAAGACATCAAAGGATGCAAAAGGGATTCGTACATTTAAA TTTGCATTGGTTGACTTTGTTAAGGAGCTTCTGAAACCAGCATGGAAAGAAGGTCAAATTAACAAAGAAGATTATAAAGCAATTGTGAAGAAAGTTGTTG ATAAAGTAACTGGCACCATGCAGGGCACCAATGTTCCTCAGACGCAAGAGAAAATTGACCACTATTTGTCATTCTCTAAACCAAAACTTAGCAAACTCGT ACAGGCTTATGTGGAAAGGGTTCCGAAGGCTTAGCGCAAGTATAGAAATTTGTCTATCAAATCATTCTTGGTGTTATTGTCTTTATCTTGTACTATGTTT CATTTTCTCCAGAATCTTCTTTTTTGTGTGTCCTCTTATTCCTGTACTCCATTTTCTAGTAGAATCTAGTAGGCATTCCAGAATCCAGAGCTCGTGTACA TACAATCTGCGGGCATTTCTTTCTTTTTCGACCTTTAGTTGTTTCTTCTGAGAAGAACTATTGGCTGTTTTGTGCCATTGGATATTAATCTTCAATTGGG ATGCTAGGCAGTTGTTATGTGAGAGTCATTTTATTTTGTTAGTTTGTTGTGTAATTACCTGAGGAGTCATCTCTTTCCTTTTTGTAAAACAGAGTTCAGG ACTTGTTAAAGAAGGTTGTGAGACTTATGTGCAGACTTTTAAACCTGTTTGTTCAGTTTTCTGACTCTGCAAAAAGTTCCAATGGTGATATTTGCAATTT ACCTCCTAAAAAAAA
• Tissue: pods
• Gene name: LI_gene_195368;
• Additional information: details;

Expression of Ll_transcript_479863

FPKM

• PAB: 0
• PNAB: 1.1
• PS1: 1.7
• PS2: 0.7
• PS3: 0.4
• PW1: 0.8
• PW2: 0.1
• PW3: 0.8

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_479863

• Blastp: Zinc finger CCCH domain-containing protein 55 from Oryza sativa with 60.44% of identity
• Blastx: Zinc finger CCCH domain-containing protein 55 from Oryza sativa with 60.44% of identity
• Eggnog: zinc finger CCCH domain-containing protein(ENOG410ZKTI)
• Kegg: Link to kegg annotations (4344611)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019434525.1)
• Pfam: Zinc finger C-x8-C-x5-C-x3-H type (and similar) (PF00642.23)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;