| Id Trinity | TRINITY_DN52766_c1_g3_i2 |
|---|---|
| Name Transcript | Ll_transcript_478942 |
| Sequence | CCATTCATTCATACTGGTTGCAGGTACAAAAATCTTCATAATCATGTGAGTAAATTCAGTTTTGGACCAACATATTCTCCATTTTTGTTAAATATATAGT CTAGTTTAGTTGAGCACTTGAAACTATTAATAAATTTCTCTTCTTTGCTTTTCTTTCTCTATGGCATATATATGCAGACAGATTATACCTTAATATATAT GGAGGAATCTCTATAGACACAACCTTCAAGTGTATAGATCCACTCGCGGGTTGTTCTAGCTTAATCAGAGGTCTCGAGTTTGAGTCAGGCAGACGTAGTT GTCTATAGTGGTCTTACGACTCGAACAGGCTATTCAATGGAATCTTCATCTTCTTCTAGTGTTACTCAAATCAAATATGATGTGTTCATCAGCTTTAGGG GCACAGATATAAGGTATGGTTTTCTTAGCCATTTGAAAAAGGAGCTAAGGCAGAAACAGGTTGATGCTTATGTGGATGATAGGCTTGAGAGTGGGGATGA AATATCACCTGCACTTGTAAAAGCCATTGAACAATCACTTATTTCTTTGATCATATTCTCAAAAGACTATGCTTCTTCAAAGTGGTGTTTGGAAGAGCTT GTGAAAATAGTTGAGTGCATGGAAAGGAATAAACAAATTGTTATTCCAGTTTTCTACAATGTTGATCCATCTGATGTACGGCATCAGAAGGGGACTTATG GAGATGCATTTGCTATACATCAGAAAAAGAAAAGGAATCTGTCTAAGTTACAAAATTGGAGATCTGCTTTGAATATAGCTGCCAATCTTTCTGGATTTCA TTCATCAAAATATGGGGATGAAGTTAAGCTTATAGAAGAAGTTGTGAAAAGTTTGTTGGCAAGGTTGAATCTTATGTACCAAAGTGAGTTAACAGACCTT GTTGGAGTTGAAGAACGGATCGCAGATATAGAGTCACTATTGTTCCTGAAATCGACAATAGATGTTCGCGTGATTGGGATTTGGGGCATGGGAGGTATTG GTAAAACAACAATTGCAGCTGCAGTATTTAACCGTTTGTGTTTTGAGTATGAAGGATGTTGCTTTATGGCAAACATAAGAGAAGAATCAGAGAAACATGG AACTATTTCTTTGAAGAATAAGATCCTCTCTATACTATTAAAGGAAAATGATCTATATATCGGTACGCCTAATGGAGTTCCTCCTTATGTAAAGAGAAGG CTGCGTCGTAAAAAGGTTCTTGTTGTTCTTGATGATATTAATGACTCAGAGCAACTAGAGAATTTGGTCGGAGAACTTGATTGGTTCGGACCCGGTAGCA GAATCATTGTGACAACAAGAGATAAACAAGTGCTTGGTAAAAGAGTTAATAGTATCTATGAGGCTAAGGCATTAAAATTTGATGAAGCTGTTAAGCTTTT CATTATGAATGCTTTCAAACAAATTAGTTGTCTCGACATGGAGTGGATTGAGCTATCAAGAAAGGTGATTCAGTATGCTAATGGAAATCCATTAGCTTTA AAAGTTTTGGGCTCTTTTCTTTACGGTAAGACGAAAATAGAGTGGGAAAGTCAATTGCAAAAGCTTAAGAAAATGCCGCATGCAAAAATTCAGAATGTTT TGAGATTGACTTTTGATAAGTTGGATAGAGAAGAGAAGAACATATTTCTATATGTTGCATGTTTTCTGAAAGGATATGAATCACACCGAATAATAGTTCT GCTTGATGCTTGTGGTTTCTCAACAATTATTGGGCTAAAAGTCCTTCAAGACAAAGCCCTTATAGTTGAAGCCAAGGGATCAGGAAGATCAATTGTATCA ATGCATGATTTGATACAAGAAATGGGTTGGGAGATTGTTAGAGAAGAATCTATCGACGACCCGGGAAAACGCAGCAGGCTATGGGATCCTACTGATATTC ATCAAGTATTGAAAAATAATACAGGAACTAAAGCCATTAAAAGCATAACTCTGAATGTGTCAAAAATTGGTGAACTGTGCTTAAGTCCTCAAGTCTTTGA TAGGATGCAACAGTTAAAATTTCTTAACTTTTCCCAACCTTATGGTGATGAGCAAATCTTGTATCTTCCTCAAGGGCTTACATCTTTGCCAAATGACCTA AGACTTTTTCATTGGATTAGTTATCCTTTGAAATCCTTGCCTACTACATTCTGTGCAGAAAATCTTGTTGAGCTCAACTTGACTTGGAGCAGAGCCGAAA AACTTTGGGATGGAATCCAGAACCTTCAACATTTAAAGAAAATTGACCTCAGTAATTCCAAACATTTGCTAGAGCTACCGGATTTTTCAAAGGCCACAAA TCTTGAAGAAATAGAACTATTTAGTTGCAGAAATTTGCTTAATGTTCATCCATCTATTTTATCTCTCCACAAGCTTGTAAGATTAAACCTGTTTTTTTGC AAAGCACTCACCAGTATCCGAAGCGATACTCATTTAAGATCCCTCCGCGATCTCTTCCTCGGTGGTTGCTCAAGGCTCAAGGAGTTTTCACTGACTTCAG AGAACATGAAAGACTTGAACTTAAATTCAACTGCTATCAATGAATTGCCATCATCAATTGGGAGACTAAAAAAACTTGAAACTTTGACACTTGATCACTG CAAAGGCCTAAACAATCTTCCAGACAAGGTTGCCGACCTTGGATCGCTACGTGTTCTTCGTATATATGGTTGCACACAACTTGATGCATCAAATCTGCAT GTCTTATTCAATGGTTTAAGGTCTTTGGAAACACTACTGCTAGAGGAATGTCTTAACTTACATGAAATTCCAGACAACATAAGTCTCCTATGTTCATTGC ATCATTTGTTACTGAAAGGAACAAATGTTGAGAGATTCCCTACAAGCATTAAGCATCTTACAAATCTAGAAAAGCTTGACTTAAGTGATTGCAAGAGGCT TCATTTTCTACCAGAACTTCCACTATCCATAAAAGAGTTATATGCCACTAATTGCTCATCTTTGGAGACTGTAATGTTCCCTTTGAGGACTACTGATCTA GTACATGCATACAAGTCA BLAST |
| Tissue | pods |
| Gene name | LI_gene_195407; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_478942
| Blastp | TMV resistance protein N from Nicotiana with 38.39% of identity |
|---|---|
| Blastx | TMV resistance protein N from Nicotiana with 36.88% of identity |
| Eggnog | - |
| Kegg | - |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019436492.1) |
| Pfam | TIR domain (PF01582.19) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |