Id Trinity | TRINITY_DN52766_c1_g3_i5 |
---|---|
Name Transcript | Ll_transcript_478949 |
Sequence | TAGAAACTTAGTCTGGTTTAATATCAAAAAAATTGTATCTTTGGATTTCTTGTCCTAAACTAAAGTTAGCATCAAATATCATAGTCAATTATCATAATAT ATTCATAATTCTGCACTTTCTTTATTGTTCCTTCTCAAGCACAAGATTTTAATCTCATCTCCATTCATTCATACTGGTTGCAGGTACAAAAATCTTCATA ATCATACAGATTATACCTTAATATATATGGAGGAATCTCTATAGACACAACCTTCAAGTGTATAGATCCACTCGCGGGTTGTTCTAGCTTAATCAGAGGT CTCGAGTTTGAGTCAGGCAGACGTAGTTGTCTATAGTGGTCTTACGACTCGAACAGGCTATTCAATGGAATCTTCATCTTCTTCTAGTGTTACTCAAATC AAATATGATGTGTTCATCAGCTTTAGGGGCACAGATATAAGGTATGGTTTTCTTAGCCATTTGAAAAAGGAGCTAAGGCAGAAACAGGTTGATGCTTATG TGGATGATAGGCTTGAGAGTGGGGATGAAATATCACCTGCACTTGTAAAAGCCATTGAACAATCACTTATTTCTTTGATCATATTCTCAAAAGACTATGC TTCTTCAAAGTGGTGTTTGGAAGAGCTTGTGAAAATAGTTGAGTGCATGGAAAGGAATAAACAAATTGTTATTCCAGTTTTCTACAATGTTGATCCATCT GATGTACGGCATCAGAAGGGGACTTATGGAGATGCATTTGCTATACATCAGAAAAAGAAAAGGAATCTGTCTAAGTTACAAAATTGGAGATCTGCTTTGA ATATAGCTGCCAATCTTTCTGGATTTCATTCATCAAAATATGGGTAACTTTTTATATATTTTATATGTTGACTTTATATGATGCATATTTTAATGGTCTA TGCATGTTCAAGTGATAAAGTCAATGGCAATCATGTTAGTTTATAGTTAAACCTTAATTTGTTGAGGATGAAAATTTTGGTCTTATAGTACATCCAATTG TGACTTAAACAATAACAACAAGGGAAAAGTTTATAAACCTCCTTAACATTCTATGATATGCATGCAATTTAGTCCCTAAAAATTTATAGATATGTAAAAA AGGACCTTAAACATTGTTGAAGGGGTAAATTAGTTTTCCATTCTTCAAAACATCCTCCTCTGAACTTTGCACCATGCTTGACTTGGTCTCGATCTATCGA ATTTTTGGTATAACCAATGGTAAATTTTAATCCTTTTGAGGGCAAATGAGCTTTTTGCACCTGAGAGTTTATGATTTTTTGTACATATTTGTGTACCTCA AGGACTATAAGTTTAGGACTGTTTTGTGACTAATCCATAATAATTAAAGAATATATTAATAACAATGGTATCAAGCTTTGATACACTTTCTTTTTTGTTG TTGCATAGGGATGAAGTTAAGCTTATAGAAGAAGTTGTGAAAAGTTTGTTGGCAAGGTTGAATCTTATGTACCAAAGTGAGTTAACAGACCTTGTTGGAG TTGAAGAACGGATCGCAGATATAGAGTCACTATTGTTCCTGAAATCGACAATAGATGTTCGCGTGATTGGGATTTGGGGCATGGGAGGTATTGGTAAAAC AACAATTGCAGCTGCAGTATTTAACCGTTTGTGTTTTGAGTATGAAGGATGTTGCTTTATGGCAAACATAAGAGAAGAATCAGAGAAACATGGAACTATT TCTTTGAAGAATAAGATCCTCTCTATACTATTAAAGGAAAATGATCTATATATCGGTACGCCTAATGGAGTTCCTCCTTATGTAAAGAGAAGGCTGCGTC GTAAAAAGGTTCTTGTTGTTCTTGATGATATTAATGACTCAGAGCAACTAGAGAATTTGGTCGGAGAACTTGATTGGTTCGGACCCGGTAGCAGAATCAT TGTGACAACAAGAGATAAACAAGTGCTTGGTAAAAGAGTTAATAGTATCTATGAGGCTAAGGCATTAAAATTTGATGAAGCTGTTAAGCTTTTCATTATG AATGCTTTCAAACAAATTAGTTGTCTCGACATGGAGTGGATTGAGCTATCAAGAAAGGTGATTCAGTATGCTAATGGAAATCCATTAGCTTTAAAAGTTT TGGGCTCTTTTCTTTACGGTAAGACGAAAATAGAGTGGGAAAGTCAATTGCAAAAGCTTAAGAAAATGCCGCATGCAAAAATTCAGAATGTTTTGAGATT GACTTTTGATAAGTTGGATAGAGAAGAGAAGAACATATTTCTATATGTTGCATGTTTTCTGAAAGGATATGAATCACACCGAATAATAGTTCTGCTTGAT GCTTGTGGTTTCTCAACAATTATTGGGCTAAAAGTCCTTCAAGACAAAGCCCTTATAGTTGAAGCCAAGGGATCAGGAAGATCAATTGTATCAATGCATG ATTTGATACAAGAAATGGGTTGGGAGATTGTTAGAGAAGAATCTATCGACGACCCGGGAAAACGCAGCAGGCTATGGGATCCTACTGATATTCATCAAGT ATTGAAAAATAATACAGGAACTAAAGCCATTAAAAGCATAACTCTGAATGTGTCAAAAATTGGTGAACTGTGCTTAAGTCCTCAAGTCTTTGATAGGATG CAACAGTTAAAATTTCTTAACTTTTCCCAACCTTATGGTGATGAGCAAATCTTGTATCTTCCTCAAGGGCTTACATCTTTGCCAAATGACCTAAGACTTT TTCATTGGATTAGTTATCCTTTGAAATCCTTGCCTACTACATTCTGTGCAGAAAATCTTGTTGAGCTCAACTTGACTTGGAGCAGAGCCGAAAAACTTTG GGATGGAATCCAGAACCTTCAACATTTAAAGAAAATTGACCTCAGTAATTCCAAACATTTGCTAGAGCTACCGGATTTTTCAAAGGCCACAAATCTTGAA GAAATAGAACTATTTAGTTGCAGAAATTTGCTTAATGTTCATCCATCTATTTTATCTCTCCACAAGCTTGTAAGATTAAACCTGTTTTTTTGCAAAGCAC TCACCAGTATCCGAAGCGATACTCATTTAAGATCCCTCCGCGATCTCTTCCTCGGTGGTTGCTCAAGGCTCAAGGAGTTTTCACTGACTTCAGAGAACAT GAAAGACTTGAACTTAAATTCAACTGCTATCAATGAATTGCCATCATCAATTGGGAGACTAAAAAAACTTGAAACTTTGACACTTGATCACTGCAAAGGC CTAAACAATCTTCCAGACAAGGTTGCCGACCTTGGATCGCTACGTGTTCTTCGTATATATGGTTGCACACAACTTGATGCATCAAATCTGCATGTCTTAT TCAATGGTTTAAGGTCTTTGGAAACACTACTGCTAGAGGAATGTCTTAACTTACATGAAATTCCAGACAACATAAGTCTCCTATGTTCATTGCATCATTT GTTACTGAAAGGAACAAATGTTGAGAGATTCCCTACAAGCATTAAGCATCTTACAAATCTAGAAAAGCTTGACTTAAGTGATTGCAAGAGGCTTCATTTT CTACCAGAACTTCCACTATCCATAAAAGAGTTATATGCCACTAATTGCTCATCTTTGGAGACTGTAATGTTCCCTTTGAGGACTACTGATCTAGTACATG CATACAAGTCA BLAST |
Tissue | pods |
Gene name | LI_gene_195407; |
Additional information | details; |
PAB | abscising pods |
PNAB | non-abscising pods |
PS1 | seeds stages 1-3 |
PS2 | seeds stages 4-6 |
PS3 | seeds stages 7-8 |
PW1 | pods wall stages 1-3 |
PW2 | pods wall stages 4-6 |
PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_478949
Blastp | TMV resistance protein N from Nicotiana with 36.27% of identity |
---|---|
Blastx | TMV resistance protein N from Nicotiana with 34.47% of identity |
Eggnog | - |
Kegg | - |
CantataDB | - |
Mirbase | - |
Ncbi protein | Link to NCBI protein (XP_019436492.1) |
Pfam | NB-ARC domain (PF00931.21) |
Rfam | - |
GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |