Ll_transcript_479448

• Id Trinity: TRINITY_DN52767_c1_g1_i13
• Name Transcript: Ll_transcript_479448
• Sequence: TAAGTTCAATAGTTTTGAGCAGTTCTGTATTAATTTTACAAATGAGAAGTTGCAACAACATTTTAATCAGCATGTCTTTAAAATGGAACAAGAAGAATAC ACGAAAGAAGAGATCAATTGGAGTTACATAGAGTTTATTGACAACCAAGATGTTTTGGATCTCATTGAGAAGAAACCTGGAGGAATAATTTCACTTCTTG ATGAAGCTTGGTATGCAGCTAATAGCGAAATCATTCTGAATTTGACATTGCTTTCAATTTAGTTTGAAGTCTATGCTTATATATTTTGTGAATTAACATT TTTTAATGTGGTTTCTTTCTTAGACTTCTTCGGGGATTGCCTGTGAATTATAGCTTGATTGAACTCATAATAGTATGGTTTTGTGACACAGTATGTTTCC TAAGTCTACACATGAAACATTTTCTCAGAAGTTGTACCAGACATTCAAAAACAACAAACGCTTTATCAAACCTAAACTTTCTCGGACTAGTTTTACAATA TCTCATTATGCAGGGGAGGTGACATATTTGGCTGATCTGTTTCTTGACAAAAACAAGGATTATGTTGTCGCAGAACATCAAGATCTACTGACAGCCTCAA AATGCTCATTTGCAGCAAGTCTATTCCCTCCTTCTCCAGAAGAGTCTTCAAAATCATCCAAGTTCTCTTCAATTGGATCTCGCTTTAAGCTACAACTTCA GTCTTTGATGGAGACCCTAAGTTCAACCGAACCTCACTATATCAGATGTGTGAAGCCAAATAATGTTCTTAAGCCTGCTATTCTTGAAAATGTCAATATT ATGCAACAATTGCGCTGTGGTGGTGTTCTTGAGGCAATTAGAATCAGCTGTGCTGGCTATCCTACCAGACGGACTTTTTATGAATTTCTTAACCGATTTG GTGTCCTTGCCCCTCAAGTTCTGGATGGAAAGTAGAGCTCATCTCTTTTTTATGCTGTTTTATCATTGTATTTGAACATGACTTTTCTTTTTTACATGCA AAACTTGTTTGTCTTGTATGTCTTGATTTCTAGGGGGTTGCTGTATGATTTAATGCCCTCTCTTTTTTGTCTTGATTTCTACTTGTTCCTTTTCAGCTCT GATGACAAGGTTGCATGCCAAATGATTCTAGATAAAGTGGGTATGAAAGGCTATCAGATTGGGAGGACAAAGGTTTTCCTAAGAGCTGGCCAGATGGCTG AGCTGGATGCAAGAAGAGCAAAGGTTCTTGGAAATGCAGCTAGAGTCATCCAGGGGCAAATACGTACCCATATTGCACGCAAAGTGTTCATTGAATTGCG TCAAGCTGCAATTCGTGTGCAGTCTAATTTGCGAGGATTGCTATCCCGAAAGCTCTATGAGCACCTGCGACGTGAAGCAGCAGCTGTAAAGATAGAAAAG AACTTCAAACGATACATCGCCTGGAAGTCTTACGTAACAGAACGGTCATCTGCAATTATATTACAGACAGGTTTAAGGGTTATGAAGGCTCGTGATGAAT TTAGATTTAGAAAGCAAACAAAGGCTGCAATTTGTATCCAGGCTCATTTGCGTCGGCAATTTGCATATTCATATTATAAAAGATTGCAAAAAGCTGCAAT TGTTACTCAGTGCGGCTGGAGGAGAAGGGTTGCCAAGAGGGAACTTAGAAACCTCAAGATGGCTGCAAGAGAAACAGGTGCCCTTAAAGAAGCCAAAGAC AAACTAGAAAAGCGTGTTGAAGAACTTACATGGCGTTTGCAAATTGAGAAGCGTTTGAGAACTGATTTGGAAGAGGACAAGGCACAAGAAATTGCCAAGT TACATGATACTTTGCATACAATGCAAAAACAAGTAGAAGAAGCAAATGCCAGGGTCGTCAAAGAGCGTGAGGAGGCACAAAAAGCCATTGAAGAAGCACC TCCAGTTATTAAGGAGACTCCTGTTATAATTCAAGATACTGAAAAGATTAATTCCTTGATGGCTGATATCAATAGTTTGAATGAATCACTGATGATGGAA AGAAAGGATAAAGAAGAAGCCAGAAAAGCTCATGCTGAGGCTGAGGCTAGAAATGAAGAGCTGGTTAAAAAAGTTGACAGTTATGAGCACAAAGTGGATC AACTCCAAGAATTGGTTCAGAGGCTGGAGGATAAAATTTCAAATATGGAATCAGAAAATCAAGTTCTTCGTCTGCAAGCCCTTGCTGTTTCTCCAACTGG AAAAGCTCTATCTGGTGGGCCAAAGACAGTGAATATTCATAGGACACCAGAAAAAGGGAATGCTCTAAATGGTGGAGAAAAAGATATATCAGGTATGACT ATCGCTGTATCAAATGTACGTGAACCTGAATCTGAGGGAAAACCACAGAAATTTCTCAATGAGAAGCAGCAAGAGAATCAAGACTTGTTGATCAAGTGCA TATCACAGGATTTGGGGTTTTCTGGTGGCAAACCTGTTGTTGCGTGTGTTATATATAGATGCCTTCTTCGCTGGAGATCATTTGAAGTCGAAAGAACGAA TGTCTTTGACCGTATCATTAAAACAATTGCTTCAGTTATTGAGGCTCAGGATAATACTGATGTATTAGCCTATTGGTTGTCTAATACATCTACTTTGTCG TTGCTACTCCAACGAACGCTCAAACCAAGTGGGACAGCTAGTTCTACACCTCAACGGCGAAGAACATCATCATCTCCTCTGTTTGGAAGAGTGTCTCAGG GGATGAGGGCATCTCCCCAAAGTTCTGTGTCACCATTAAACAATAGAGGACTTGGCAGATTGAATGATTTACGACAAGTGGAAGCAAAATATCCTGCACT TCTGTTTAAGCAACAACTCACTGCCTTCCTTGAAAAAATATATGGAATGATAAGAGACAATCTAAAAAAGGAGATATCTCCATTACTTGGATTGTGCATC CAGGCTCCAAAGACCTCACGACAAACCTCAATAAAAGGACGTACACATGCTAATGCAGTTGCTCAGAAAGCTTTAATTGCTCACTGGCAAAGTATTGTGA AGAGCTTAAACAATTATCTAAAGATTATGAAAGCAAACTATGTTCCCTCGTTGTTGATACGTAATGTGTTCACCCAAACATTCTCCTTCATTAATGTTCA ATTATTCAATAGTCTTCTTTTGCGCCGCGAGTGTTGTTCATTCAGTAATGGCGAGTTTGTAAAGTCTGGTTTGGGTGAATTAGAACAGTGGTGCGTTGAG GCAACAGAAGAGTATGTTGGTACAGCTTGGGAGGAACTAAAGCATATCAGGCAGGCTGTTGGATTCCTAGTGACACATCAAAAACCGAAAAAGACGATGA ATGAAATAACAAAGGAACTTTGCAATGTTCTCAGTATACAACAGTTATACAGGATTAGTACAATGTACTGGGATGATAAATATGGCACACACAGTGTATC TACAGATGTTATATCAAGCATGAGAACTATGATGTCTGAGGACTCTAATAATGCTGCCAGCACTTCTTTCCTATTGGATGATGACTCAAGCATTCCATTT TCGGTGGATGATATTTCCAAATCCATGCAAGAAGTAGAAATAGCTGAGGTGGATCCTCCTGCGTTGATGCGCGAGAACTTAGGATTTGGGTTCTTACTAG CACGCTCAGAGTGATG
• Tissue: pods
• Gene name: LI_gene_195417;
• Additional information: details;

Expression of Ll_transcript_479448

FPKM

• PAB: 0
• PNAB: 0.3
• PS1: 0.3
• PS2: 0.2
• PS3: 0.5
• PW1: 0.5
• PW2: 0.2
• PW3: 0.1

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_479448

• Blastp: Myosin-17 from Arabidopsis with 71.84% of identity
• Blastx: Myosin-17 from Arabidopsis with 69.65% of identity
• Eggnog: myosin heavy chain(COG5022)
• Kegg: Link to kegg annotations (AT5G20490)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019414422.1)
• Pfam: IQ calmodulin-binding motif (PF00612.26)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;