| Id Trinity | TRINITY_DN52788_c2_g1_i12 |
|---|---|
| Name Transcript | Ll_transcript_481788 |
| Sequence | CTTTTATTTCTCAGTTCTCCTCAGAGGTAGCGATCTTTTTATTTTATTAAGAAAAGAAAAAAGGGCCAAATTAACTTCTCTCTATTCCTCTCAACCCTAA CCCTAATCACAATCGCAATTCATAATTCATAATACTCATTCCATTGATTCCCAACACACTCGTAACATCATTCGGTTCTGATTCCGAAACCCTAACGCTA TGGACTCACAACAGAGCAATCTATTCGACACCGCTTCGCAACCCGACGCTGCCAACGACGCCTACACTTTCCTTGAATTCAACACTCAGGGCGATGATTT CGACTACCCGGAGTTCCACGACCCGATTAGGTCACCGGTGTCATGGCCCACGCCCTCCGATTCGCTGGCTGAACCCTCTGAGCGCGGTGGTGGAGGTAAT GGAGCTGGGTCTGATCACCAGTCTGATGCTTCGCCTGTTTCTGCAACTCCGGGGAGCGCGACCAAGGGGCGTTCTGGAAGCAGCGCCGGAGGGAATAGCC AGATGGTGGATGCGCTGGTTCCGGGGATGAGCGAGTTGAATTTTGAGGACACGGGTGATGATGATAATTTTGAGTATGGTAAGGGAGATTTCACTGAACA TGCTTGTAAGTATTGTGGTGTCTCAAATCCAGCGTGTGTTGTGAGGTGCAACGTGCCTTCGTGTCGCAAATGGTTCTGTAATTCACGTGGGAACACTTCT GGATCGCATATTGTAAATCATTTGGTTCGGGCAAAACATAAAGAAGTCTGTCTACACAAAGATAGTCCATTGGGAGAAACAATTCTTGAATGCTACAACT GTGGCTGTCGTAATGTGTTTCTTCTTGGATTTATTTCTGCCAAGACTGAAAGTGTAGTTGTTCTTCTTTGTCGCGAGCCTTGCTTAAGTGTCAATGCATT GAAGGACATGAATTGGGACCTTAGTCAATGGTGTCCCTTGATTGACGATAGGTGCTTCTTGCAGTGGCTCGTCAAGGTTCCATCCGAACAAGAGCAGTTA AGGGCACGCCAAATAAGTGCGCAGCAAATAAATAAGGTGGAAGAGTTGTGGAAGACAAACCCCGATGCTTCTTTTGAGGACCTTGAGAAGCCTGGTGTAG ATGATGAACCTCAATCTGTGGCTTTGAAATATGAAGATGCTTATCAGTATCAAAATGTATTCGCACCTCTTATTAAGCTTGAAGCCGATTATGATAAGAT GATGAAAGAATCACAAAGCAAGGACAATCTTACTGTTCGATGGGATATCGGTCTTAATAAGAAGCGTGTTGCATACTTTGTTTTTCCAAAGGAAGACAAT GAGTTGCGTCTTGTACCTGGAGATGAATTACGATTACGTTATTCTGGTGATGCTGCACACCCTGCGTGGCAGTCAGTGGGTCATGTGATTAAGCTAACTG CACAGGAAGAAGTAGCACTGGAGCTTCGTGCCAGTCAGGGGGTGCCAGTTGATGTAAACCATGGTTTCAGTGTTGATTTTGTTTGGAAGAGTACAAGCTT TGATAGGATGCAAGGTGCGATGAAAAACTTTGCTGTGGATGAGACAAGTGTAAGCGGGTATATTTATCATCATTTATTGGGTCACGAAGTTGAGGTTCAG ATGGTGCGTAATGCATTGCCTCGTCGCTTTGGTGCACCCGGGCTTCCAGAACTCAATGCATCTCAAGTTTTTGCTGTTAAAAGTGTTCTCCAGAGGCCTA TTAGTTTGATTCAAGGTCCACCTGGAACTGGGAAGACTGTAACTTCTGCAGCACTTGTATATCACATGGCCAAGCAAGGACAGGGACAGGTTTTGGTTTG TGCACCTAGTAATGTGGCTGTGGACCAACTGGCTGAAAAGATAAGTGCTACTGGATTGAAGGTTGTGAGGCTTTGTGCAAAGTCAAGGGAAGCTGTGAGT TCTCCTGTTGAGCATTTAACACTTCACTATCAGGTCCGACATCTTGACACATCTGACAAGAGTGAACTTCACAAGTTACAGATGCTTAAAGACGAGCAAG GAGAACTTTCTAGCAGTGATGAAAAAAAATACAAAGCACTTAAGCGAGCAACAGAGAGGGAGATTTCTCAAAGTGCTGATGTGATATGCTGTACTTGTGT TGGTGCTGGAGATCCTAGGCTGGCAAATTTTAGGTTCCGTCAGGTACTTATTGACGAGTCCACTCAAGCAACAGAACCTGAGTGTCTCATTCCTTTGGTT CTCGGGGTGAAGCAGGTTGTTCTTGTTGGTGACCATTGTCAGCTTGGTCCAGTCATTATGTGCAAGAAAGCAGCTCGTGCTGGATTAGCTCAGTCACTCT TTGAACGCCTTGTTCTACTTGGTGTCAAACCAATTAGGTTGCAGGTTCAATATCGCATGCATCCATGCCTTTCAGAATTTCCCTCAAACAGCTTTTATGA AGGCACCCTGCAAAATGGAGTCACTGTTAATGAAAGGCAAACATCAGGAATTGATTTTCCATGGCCTGTGCCAAACCGTCCCATGTTCTTTTATGTTCAG ATGGGACAAGAAGAGATAAGTGCAAGCGGCACATCTTATTTAAATAGGACTGAGGCTGCAAATGTTGAAAAGATTGTAACCACTTTCTTAAAAAGTGGTG TGGTCCCAAGTCAGATTGGTGTGATAACACCTTATGAGGGACAAAGAGCTTATATTGTGAACCATATGTCAAGAAATGGTTCTCTCAGACAGCAACTTTA TAAGGAGATTGAGGTTGCCAGTGTTGATTCCTTTCAGGGGAGGGAGAAAGACTACATCATTCTTTCATGTGTTAGAAGTAATGAACACCAGGGCATCGGG TTTCTGAATGATCCGAGGAGGCTCAATGTTGCTTTGACTCGAGCGAGATATGGTATCGTTATTCTGGGAAACCCTAAAGTTCTAAGCAAGCAACCCCTGT GGAATGGCTTATTGACACACTATAAGGAACATGAATGCTTAGTAGAAGGGCCTTTGAACAATTTGAAGCAGAGCATGGTTCAATTCCAGAAACCCAAAAA AATTTACAACGAACGGAGGCTTTTTTATGGGGGTGGACCTGGAATTGCAGCTAATGACAATTTTGGTTCTGGTGCAACTTCAGATCGAAGGATTGGCCGA GGAAGAGGATCTTATATACCTCCTGGCCCAACAAATGGAACCCATAAGCCTGGTGTGCATTCTGCTGGGTATACTCTGCCTAGAGCTCCCTTGCATCCTT TTCATGGTGGTCCCCAATCTCAACCATATGCAATCCCATCTCGTGGAGCTGTACATGGACCTGTTGGGGCAGTTCCTCATGTATCATCTCCAGGGAGTCG GGGTTTTGGGGCAGGGAGAGGTAATGCCGGTGCTGCAATCGGAAATCATCTTCCGCACCAGCAAGGTACACCGCAATCTGTTGGGAATATTGGACCCACT TTTAACTTCCCTGCTCTGGAGAATCCTAACAGCCAGTCCTCTGTTGGTGGTCCATTATCTCAGCCTGGGTTTGCTAATAATATGTCAGTCCAGGGGGCGA GCCAGCCATTCCTTGATCAGTTTTCAGTACCTGGAATGTCTCAGGACTTCTTGGGCGATGACTTCAAAAGCCAGGGATCTCATGTTCCTTATAATGTTGC TGATTTCTCGACACAGGCTTCTCAATCTGTATATGCTGTTGATTATGCTACACAAGGAGCACAAGGTGGATTCCCGGGGAATTTCCTGAACCAGAATTCT CAAGCTGGGTATCCGCGTTTTGGTTCTGGAAATGACTTCATGTCTCAGGACTACATGGCCCATGGATCACCAGATCTTTTCACTCAGGCTGGATTCAGTG ATCACTTACAAGATGATGCAACACAGAGCCATTTCAGTGTGGCCAATCCCAATGCTCTTCAGTCTCAGATGAATTCTCTCTATTCCCAGCCTTTTGCTCA CTACAACACACAGCCGCTGAACTTGCAGGCTTCCCAACAGCAGCCTCCGGGTCAGACCTCCCAAAATCAGAAAATTCAC BLAST |
| Tissue | pods |
| Gene name | LI_gene_195592; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_481788
| Blastp | Regulator of nonsense transcripts 1 homolog from Arabidopsis with 82.5% of identity |
|---|---|
| Blastx | Regulator of nonsense transcripts 1 homolog from Arabidopsis with 81.91% of identity |
| Eggnog | Helicase(COG1112) |
| Kegg | Link to kegg annotations (AT5G47010) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019445009.1) |
| Pfam | RNA helicase (UPF2 interacting domain) (PF09416.9) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |