Ll_transcript_481789

• Id Trinity: TRINITY_DN52788_c2_g1_i13
• Name Transcript: Ll_transcript_481789
• Sequence: GAGAATTCTGCTTGAAGACTCCAATACGGTTCTTGAATCTTGAATACGTCTTTTTTACTCTCTCATCTTTCACTCTCTCATCTTTCACTCTCTCTACCTT CTTTCTCTTCCTCCCTCAATCTAACCCTAACCCTAACTCTAATAATCACAATTCATAGCTCCATTCCTCCGCATTTTCACAATCTCAAAACCGTAATCCC AACGATTCATTCCAGTTCCTCAAGATCGATCCATTCTGATTCCGAAACCCTCACGCGATGGACTCACAACAGAGCAATCTATTCGACACGGCTTCGCAAC CCGACACAGGCAACGATGCCTACACTTTCCTTGAATTCAACACTCAGGGCGAGGATTTCGACTACCCGGAGTTCCGCGACCCGACTAGGTCACCGGTGTC GTGGCCCACGCCCTCTGGTTCGCTTGCTGAACCCTCTGACCGCGGAGGTGGAGGTGGCGGAGCTGTGTCCGATCACCACTCTGATGCCTCACCTGTTTCG ACAGCCTCGGGAAGTGCGACGAAGGGGCGGTCAGGAAGCGGAGGGAATATTCAGATGGTGGATGCGCTGGTGCCGGGGATAAGCGGGTTGAATTTCGAGG ACACCGGCGAGGATGATAATTTTGATTATGGTAAGGGAGATTTCACTGAACATGCTTGCAAGTATTGCGGTGTCTCCAATCCAGCATGTGTTGTGAGGTG CAATGTGCCTTCATGTCGCAAATGGTTCTGTAATTCACGTGGGAACACTTCTGGGTCGCATATCGTAAATCACCTGGTTCGGGCAAAACACAAGGAAGTG TGTCTGCACAAAGATAGTCCTCTGGGAGAAACAATTCTTGAATGCTACAACTGTGGGTGTCGTAATGTGTTTCTCCTGGGATTTATTTCTGCCAAGACTG AAAGTGTAGTTGTTCTTCTTTGTCGCGAGCCTTGCTTAAGTGTCAATGCATTGAAGGACATGAATTGGGACCTTAGTCAATGGTGTCCCTTGATTGACGA TAGGTGCTTCTTGCAGTGGCTCGTCAAGGTTCCATCCGAACAAGAGCAGTTAAGGGCACGCCAAATAAGTGCGCAGCAAATAAATAAGGTGGAAGAGTTG TGGAAGACAAACCCCGATGCTTCTTTTGAGGACCTTGAGAAGCCTGGTGTAGATGATGAACCTCAATCTGTGGCTTTGAAATATGAAGATGCTTATCAGT ATCAAAATGTATTCGCACCTCTTATTAAGCTTGAAGCCGATTATGATAAGATGATGAAAGAATCACAAAGCAAGGACAATCTTACTGTTCGATGGGATAT CGGTCTTAATAAGAAGCGTGTTGCATACTTTGTTTTTCCAAAGGAAGACAATGAGTTGCGTCTTGTACCTGGAGATGAATTACGATTACGTTATTCTGGT GATGCTGCACACCCTGCGTGGCAGTCAGTGGGTCATGTGATTAAGCTAACTGCACAGGAAGAAGTAGCACTGGAGCTTCGTGCCAGTCAGGGGGTGCCAG TTGATGTAAACCATGGTTTCAGTGTTGATTTTGTTTGGAAGAGTACAAGCTTTGATAGGATGCAAGGTGCGATGAAAAACTTTGCTGTGGATGAGACAAG TGTAAGCGGGTATATTTATCATCATTTATTGGGTCACGAAGTTGAGGTTCAGATGGTGCGTAATGCATTGCCTCGTCGCTTTGGTGCACCCGGGCTTCCA GAACTCAATGCATCTCAAGTTTTTGCTGTTAAAAGTGTTCTCCAGAGGCCTATTAGTTTGATTCAAGGTCCACCTGGAACTGGGAAGACTGTAACTTCTG CAGCACTTGTATATCACATGGCCAAGCAAGGACAGGGACAGGTTTTGGTTTGTGCACCTAGTAATGTGGCTGTGGACCAGCTGGCTGAAAAGATAAGTGC AACTGGGTTGAAGGTTGTGAGGCTCTGTGCAAAGTCAAGGGAAGCTGTGAGTTCTCCTGTTGAGCATTTAACACTTCACTATCAGGTTACTGTTACATTT GTTTCAACCAATATTTTTTTTCAAAATTTGGCCATTCTTAGGGTACTTTTCTTCTTGGATGGTGTATTTGAGTAATGGTTACAGTATTACATATTTGAAT GATGATCATTAAGCATGATGAATGTGTATGGTGTTTCTTGAAGGTTCGACATCTGGACACATCTGACAAGAGTGAGCTTCACAAATTACAAATGCTTAAA GATGAACAAGGAGAACTTTCTAGCAGTGATGAAAAAAAATATAAAGCACTTAAACGAGCAACAGAGAGGGAGATTTCTCAAAGTGCTGATGTGATATGCT GTACATGTGTTGGTGCTGGAGATCCTCGGCTATCAAATTTTAGGTTCCGTCAGGTACTTATTGACGAGTCCACTCAAGCAACAGAACCTGAATGTCTCAT TCCTTTGGTTCTTGGGGCAAAGCAGGCTGTTCTTGTGGGTGACCATTGTCAGCTTGGTCCAGTCATTATGTGCAAGAAAGCAGCTCGCGCTGGGCTAGCT CAGTCACTTTTTGAACGTCTTGTTCTACTTGGCGTCAAACCAATTAGGTTGCAGGTTCAGTACCGTATGCATCCATGTCTTTCAGAATTTCCCTCAAATA GCTTTTATGAAGGCACCTTGCAAAATGGAGTCACTGTTAATGAAAGGCAAACATCAGGAATTGATTTTCCATGGCCTGTGCCAAACCGTCCCATGTTCTT TTATGTTCAGATGGGACAAGAAGAGATAAGTGCAAGTGGAACATCTTATTTAAATAGGACCGAGGCTGCAAATGTTGAAAAGATTGTAACCACTTTCTTA AAAAGTGGCGTGGTCCCGAGTCAGATCGGTGTGATAACACCTTATGAGGGGCAAAGAGCTTATATTGTGAACTATATGTCAAGAAATGGTTCTCTCAGAC AGCAACTTTATAAGGAGATTGAGGTTGCCAGTGTTGATTCCTTTCAGGGGAGGGAGAAAGACTACATCATTCTTTCATGTGTTAGAAGTAATGAACACCA GGGCATCGGGTTTCTGAATGATCCGAGGAGGCTCAATGTTGCTTTGACTCGAGCGAGATATGGTATCGTTATTCTGGGAAACCCTAAAGTTCTAAGCAAG CAACCCCTGTGGAATGGCTTATTGACACACTATAAGGAACATGAATGCTTAGTAGAAGGGCCTTTGAACAATTTGAAGCAGAGCATGGTTCAATTCCAGA AACCCAAAAAAATTTACAACGAACGGAGGCTTTTTTATGGGGGTGGACCTGGAATTGCAGCTAATGACAATTTTGGTTCTGGTGCAACTTCAGATCGAAG GATTGGCCGAGGAAGAGGATCTTATATACCTCCTGGCCCAACAAATGGAACCCATAAGCCTGGTGTGCATTCTGCTGGGTATACTCTGCCTAGAGCTCCC TTGCATCCTTTTCATGGTGGCCCCCAATCTCAACCATATGCAATTCCATCTCGTAGAGCTGTACATGGACCCGTTGGGGCAGTTCCTCATGTACCGTCTC CAGGGAGTCGAGGTTTTGGGGCTGGCAGAGGTAATACCGGTGCTTCAATTGGCAACCATCTTCCGCACCAGCAAAGTACACAGCAACCTGTTGGGAATAT TGGATCCACATTTAACTTCCCTGCTTTGGAAAATCCTAATAGCCAGCCATCTGTTGGCGGTCCATTTTCTCAACCTGGATTTGCTAATAATATGCCAGTC CAAGGGGCAAGCCAATCATTTCGTGATCAGTTTTCTGTGCCTGGAATGTCTCAGGACTTCTTGGGTGATGACTTCAAAAGCCAGGGATCTCTTGTTCCGT ATAACGTTGCTGATTTCTCTACACAGGCTTCTCAATCTGCATATGCTGTTGATTATGCTACACAAGGAGCACAAGGTGGATTCCCGGGGAATTTCCTGAA CCAGAATTCTCAAGCTGGGTATCCGCGTTTTGGTTCTGGAAATGACTTCATGTCTCAGGACTACATGGCCCATGGATCACCAGATCTTTTCACTCAGGCT GGATTCAGTGATCACTTACAAGATGATGCAACACAGAGCCATTTCAGTGTGGCCAATCCCAATGCTCTTCAGTCTCAGATGAATTCTCTCTATTCCCAGC CTTTTGCTCACTACAACACACAACCGCCGAACTTGCAGGCTTCCCAACAGCAGTCTCAGGGTCAGGGCTCTCAAAATCAGAAAATTCACTATAATGGTTA AGGAACTTTAAGAGCTTAATATGGCTTTGATGGGTTTTTTGTTGTTGCAATCAGCAAACTGGGTTTGTTCCTGTCTTCTTTGCGATGGCTTTCTTGGGAT CTCTGTCTGCATAACCCATATTTGATGGATTGGTATTATATGATTTGATTTGGTGGAATTGTGGGGCATTAAGAAGGATACAAGCTGCTCATCTTGGGCA AGAAAAAGAAGGATAACCCGTTACCTTACTGAAATTTTTTAAGGTGAAATTATTCGAGCTAGCATTACATGGAATGGTTTTGTCAAAAGGGTCTCTCTAT CTTGAAGCATAAGGGACGG
• Tissue: pods
• Gene name: LI_gene_195592;
• Additional information: details;

Expression of Ll_transcript_481789

FPKM

• PAB: 0.4
• PNAB: 0.6
• PS1: 0.3
• PS2: 0.2
• PS3: 0.3
• PW1: 0
• PW2: 0.4
• PW3: 0.2

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_481789

• Blastp: Regulator of nonsense transcripts 1 homolog from Arabidopsis with 79.74% of identity
• Blastx: Regulator of nonsense transcripts 1 homolog from Arabidopsis with 80.75% of identity
• Eggnog: Helicase(COG1112)
• Kegg: Link to kegg annotations (AT5G47010)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019423136.1)
• Pfam: AAA domain (PF13086.5)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;