Ll_transcript_481790

• Id Trinity: TRINITY_DN52788_c2_g1_i14
• Name Transcript: Ll_transcript_481790
• Sequence: GAGAATTCTGCTTGAAGACTCCAATACGGTTCTTGAATCTTGAATACGTCTTTTTTACTCTCTCATCTTTCACTCTCTCATCTTTCACTCTCTCTACCTT CTTTCTCTTCCTCCCTCAATCTAACCCTAACCCTAACTCTAATAATCACAATTCATAGCTCCATTCCTCCGCATTTTCACAATCTCAAAACCGTAATCCC AACGATTCATTCCAGTTCCTCAAGATCGATCCATTCTGATTCCGAAACCCTCACGCGATGGACTCACAACAGAGCAATCTATTCGACACGGCTTCGCAAC CCGACACAGGCAACGATGCCTACACTTTCCTTGAATTCAACACTCAGGGCGAGGATTTCGACTACCCGGAGTTCCGCGACCCGACTAGGTCACCGGTGTC GTGGCCCACGCCCTCTGGTTCGCTTGCTGAACCCTCTGACCGCGGAGGTGGAGGTGGCGGAGCTGTGTCCGATCACCACTCTGATGCCTCACCTGTTTCG ACAGCCTCGGGAAGTGCGACGAAGGGGCGGTCAGGAAGCGGAGGGAATATTCAGATGGTGGATGCGCTGGTGCCGGGGATAAGCGGGTTGAATTTCGAGG ACACCGGCGAGGATGATAATTTTGATTATGGTAAGGGAGATTTCACTGAACATGCTTGCAAGTATTGCGGTGTCTCCAATCCAGCATGTGTTGTGAGGTG CAATGTGCCTTCATGTCGCAAATGGTTCTGTAATTCACGTGGGAACACTTCTGGGTCGCATATCGTAAATCACCTGGTTCGGGCAAAACACAAGGAAGTG TGTCTGCACAAAGATAGTCCTCTGGGAGAAACAATTCTTGAATGCTACAACTGTGGGTGTCGTAATGTGTTTCTCCTGGGATTTATTTCTGCCAAGACTG AAAGTGTAGTTGTTCTTCTTTGTCGCGAGCCTTGCTTAAGTGTCAATGCATTGAAGGACATGAATTGGGACCTTAGTCAATGGTGTCCCTTGATTGACGA TAGGTGCTTCTTGCAGTGGCTCGTCAAGGTTCCATCCGAACAAGAGCAGTTAAGGGCACGCCAAATAAGTGCGCAGCAAATAAATAAGGTGGAAGAGTTG TGGAAGACAAACCCCGATGCTTCTTTTGAGGACCTTGAGAAGCCTGGTGTAGATGATGAACCTCAATCTGTGGCTTTGAAATATGAAGATGCTTATCAGT ATCAAAATGTATTCGCACCTCTTATTAAGCTTGAAGCCGATTATGATAAGATGATGAAAGAATCACAAAGCAAGGACAATCTTACTGTTCGATGGGATAT CGGTCTTAATAAGAAGCGTGTTGCATACTTTGTTTTTCCAAAGGAAGACAATGAGTTGCGTCTTGTACCTGGAGATGAATTACGATTACGTTATTCTGGT GATGCTGCACACCCTGCGTGGCAGTCAGTGGGTCATGTGATTAAGCTAACTGCACAGGAAGAAGTAGCACTGGAGCTTCGTGCCAGTCAGGGGGTGCCAG TTGATGTAAACCATGGTTTCAGTGTTGATTTTGTTTGGAAGAGTACAAGCTTTGATAGGATGCAAGGTGCGATGAAAAACTTTGCTGTGGATGAGACAAG TGTAAGCGGGTATATTTATCATCATTTATTGGGTCACGAAGTTGAGGTTCAGATGGTGCGTAATGCATTGCCTCGTCGCTTTGGTGCACCCGGGCTTCCA GAACTCAATGCATCTCAAGTTTTTGCTGTTAAAAGTGTTCTCCAGAGGCCTATTAGTTTGATTCAAGGTCCACCTGGAACTGGGAAGACTGTAACTTCTG CAGCACTTGTATATCACATGGCCAAGCAAGGACAGGGACAGGTTTTGGTTTGTGCACCTAGTAATGTGGCTGTGGACCAACTGGCTGAAAAGATAAGTGC TACTGGATTGAAGGTTGTGAGGCTTTGTGCAAAGTCAAGGGAAGCTGTGAGTTCTCCTGTTGAGCATTTAACACTTCACTATCAGGTCCGACATCTTGAC ACATCTGACAAGAGTGAACTTCACAAGTTACAGATGCTTAAAGACGAGCAAGGAGAACTTTCTAGCAGTGATGAAAAAAAATACAAAGCACTTAAGCGAG CAACAGAGAGGGAGATTTCTCAAAGTGCTGATGTGATATGCTGTACTTGTGTTGGTGCTGGAGATCCTAGGCTGGCAAATTTTAGGTTCCGTCAGGTACT TATTGACGAGTCCACTCAAGCAACAGAACCTGAGTGTCTCATTCCTTTGGTTCTCGGGGTGAAGCAGGTTGTTCTTGTTGGTGACCATTGTCAGCTTGGT CCAGTCATTATGTGCAAGAAAGCAGCTCGTGCTGGATTAGCTCAGTCACTCTTTGAACGCCTTGTTCTACTTGGTGTCAAACCAATTAGGTTGCAGGTTC AATATCGCATGCATCCATGCCTTTCAGAATTTCCCTCAAACAGCTTTTATGAAGGCACCCTGCAAAATGGAGTCACTGTTAATGAAAGGCAAACATCAGG AATTGATTTTCCATGGCCTGTGCCAAACCGTCCCATGTTCTTTTATGTTCAGATGGGACAAGAAGAGATAAGTGCAAGCGGCACATCTTATTTAAATAGG ACTGAGGCTGCAAATGTTGAAAAGATTGTAACCACTTTCTTAAAAAGTGGTGTGGTCCCAAGTCAGATTGGTGTGATAACACCTTATGAGGGACAAAGAG CTTATATTGTGAACCATATGTCAAGAAATGGTTCTCTCAGACAGCAACTTTATAAGGAGATTGAGGTTGCCAGTGTTGATTCCTTTCAGGGGAGGGAGAA AGACTACATCATTCTTTCATGTGTTAGAAGTAATGAACACCAGGGCATCGGGTTTCTGAATGATCCGAGGAGGCTCAATGTTGCTTTGACTCGAGCGAGA TATGGTATCGTTATTCTGGGAAACCCTAAAGTTCTAAGCAAGCAACCCCTGTGGAATGGCTTATTGACACACTATAAGGAACATGAATGCTTAGTAGAAG GGCCTTTGAACAATTTGAAGCAGAGCATGGTTCAATTCCAGAAACCCAAAAAAATTTACAACGAACGGAGGCTTTTTTATGGGGGTGGACCTGGAATTGC AGCTAATGACAATTTTGGTTCTGGTGCAACTTCAGATCGAAGGATTGGCCGAGGAAGAGGATCTTATATACCTCCTGGCCCAACAAATGGAACCCATAAG CCTGGTGTGCATTCTGCTGGGTATACTCTGCCTAGAGCTCCCTTGCATCCTTTTCATGGTGGTCCCCAATCTCAACCATATGCAATCCCATCTCGTGGAG CTGTACATGGACCTGTTGGGGCAGTTCCTCATGTATCATCTCCAGGGAGTCGGGGTTTTGGGGCAGGGAGAGGTAATGCCGGTGCTGCAATCGGAAATCA TCTTCCGCACCAGCAAGGTACACCGCAATCTGTTGGGAATATTGGACCCACTTTTAACTTCCCTGCTCTGGAGAATCCTAACAGCCAGTCCTCTGTTGGT GGTCCATTATCTCAGCCTGGGTTTGCTAATAATATGTCAGTCCAGGGGGCGAGCCAGCCATTCCTTGATCAGTTTTCAGTACCTGGAATGTCTCAGGACT TCTTGGGCGATGACTTCAAAAGCCAGGGATCTCATGTTCCTTATAATGTTGCTGATTTCTCGACACAGGCTTCTCAATCTGTATATGCTGTTGATTATGC TACACAAGGAGCACAAGGTGGATTCCCGGGGAATTTCCTGAACCAGAATTCTCAAGCTGGGTATCCGCGTTTTGGTTCTGGAAATGACTTCATGTCTCAG GACTACATGGCCCATGGATC
• Tissue: pods
• Gene name: LI_gene_195592;
• Additional information: details;

Expression of Ll_transcript_481790

FPKM

• PAB: 6.2
• PNAB: 6.7
• PS1: 9
• PS2: 5.5
• PS3: 7.3
• PW1: 5.7
• PW2: 6
• PW3: 4.2

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_481790

• Blastp: Regulator of nonsense transcripts 1 homolog from Arabidopsis with 83.19% of identity
• Blastx: Regulator of nonsense transcripts 1 homolog from Arabidopsis with 82.7% of identity
• Eggnog: Helicase(COG1112)
• Kegg: Link to kegg annotations (AT5G47010)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019445009.1)
• Pfam: RNA helicase (UPF2 interacting domain) (PF09416.9)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;