Ll_transcript_481791

• Id Trinity: TRINITY_DN52788_c2_g1_i15
• Name Transcript: Ll_transcript_481791
• Sequence: GAGAATTCTGCTTGAAGACTCCAATACGGTTCTTGAATCTTGAATACGTCTTTTTTACTCTCTCATCTTTCACTCTCTCATCTTTCACTCTCTCTACCTT CTTTCTCTTCCTCCCTCAATCTAACCCTAACCCTAACTCTAATAATCACAATTCATAGCTCCATTCCTCCGCATTTTCACAATCTCAAAACCGTAATCCC AACGATTCATTCCAGTTCCTCAAGATCGATCCATTCTGATTCCGAAACCCTCACGCGATGGACTCACAACAGAGCAATCTATTCGACACGGCTTCGCAAC CCGACACAGGCAACGATGCCTACACTTTCCTTGAATTCAACACTCAGGGCGAGGATTTCGACTACCCGGAGTTCCGCGACCCGACTAGGTCACCGGTGTC GTGGCCCACGCCCTCTGGTTCGCTTGCTGAACCCTCTGACCGCGGAGGTGGAGGTGGCGGAGCTGTGTCCGATCACCACTCTGATGCCTCACCTGTTTCG ACAGCCTCGGGAAGTGCGACGAAGGGGCGGTCAGGAAGCGGAGGGAATATTCAGATGGTGGATGCGCTGGTGCCGGGGATAAGCGGGTTGAATTTCGAGG ACACCGGCGAGGATGATAATTTTGATTATGGTAAGGGAGATTTCACTGAACATGCTTGCAAGTATTGCGGTGTCTCCAATCCAGCATGTGTTGTGAGGTG CAATGTGCCTTCATGTCGCAAATGGTTCTGTAATTCACGTGGGAACACTTCTGGGTCGCATATCGTAAATCACCTGGTTCGGGCAAAACACAAGGAAGTG TGTCTGCACAAAGATAGTCCTCTGGGAGAAACAATTCTTGAATGCTACAACTGTGGGTGTCGTAATGTGTTTCTCCTGGGATTTATTTCTGCCAAGACTG AAAGTGTAGTTGTTCTTCTTTGTCGCGAGCCTTGCTTAAGTGTCAATGCATTGAAGGACATGAATTGGGACCTTAGTCAATGGTGTCCCTTGATTGACGA TAGGTGCTTCTTGCAGTGGCTCGTCAAGGTTCCATCCGAACAAGAGCAGTTAAGGGCACGCCAAATAAGTGCGCAGCAAATAAATAAGGTGGAAGAGTTG TGGAAGACAAACCCCGATGCTTCTTTTGAGGACCTTGAGAAGCCTGGTGTAGATGATGAACCTCAATCTGTGGCTTTGAAATATGAAGATGCTTATCAGT ATCAAAATGTATTCGCACCTCTTATTAAGCTTGAAGCCGATTATGATAAGATGATGAAAGAATCACAAAGCAAGGACAATCTTACTGTTCGATGGGATAT CGGTCTTAATAAGAAGCGTGTTGCATACTTTGTTTTTCCAAAGGAAGACAATGAGTTGCGTCTTGTACCTGGAGATGAATTACGATTACGTTATTCTGGT GATGCTGCACACCCTGCGTGGCAGTCAGTGGGTCATGTGATTAAGCTAACTGCACAGGAAGAAGTAGCACTGGAGCTTCGTGCCAGTCAGGGGGTGCCAG TTGATGTAAACCATGGTTTCAGTGTTGATTTTGTTTGGAAGAGTACAAGCTTTGATAGGATGCAAGGTGCGATGAAAAACTTTGCTGTGGATGAGACAAG TGTAAGCGGGTATATTTATCATCATTTATTGGGTCACGAAGTTGAGGTTCAGATGGTGCGTAATGCATTGCCTCGTCGCTTTGGTGCACCCGGGCTTCCA GAACTCAATGCATCTCAAGTTTTTGCTGTTAAAAGTGTTCTCCAGAGGCCTATTAGTTTGATTCAAGGTCCACCTGGAACTGGGAAGACTGTAACTTCTG CAGCACTTGTATATCACATGGCCAAGCAAGGACAGGGACAGGTTTTGGTTTGTGCACCTAGTAATGTGGCTGTGGACCAGCTGGCTGAAAAGATAAGTGC AACTGGGTTGAAGGTTGTGAGGCTCTGTGCAAAGTCAAGGGAAGCTGTGAGTTCTCCTGTTGAGCATTTAACACTTCACTATCAGGTTCGACATCTGGAC ACATCTGACAAGAGTGAGCTTCACAAATTACAAATGCTTAAAGATGAACAAGGAGAACTTTCTAGCAGTGATGAAAAAAAATATAAAGCACTTAAACGAG CAACAGAGAGGGAGATTTCTCAAAGTGCTGATGTGATATGCTGTACATGTGTTGGTGCTGGAGATCCTCGGCTATCAAATTTTAGGTTCCGTCAGGTACT TATTGACGAGTCCACTCAAGCAACAGAACCTGAATGTCTCATTCCTTTGGTTCTTGGGGCAAAGCAGGCTGTTCTTGTGGGTGACCATTGTCAGCTTGGT CCAGTCATTATGTGCAAGAAAGCAGCTCGCGCTGGGCTAGCTCAGTCACTTTTTGAACGTCTTGTTCTACTTGGCGTCAAACCAATTAGGTTGCAGGTTC AGTACCGTATGCATCCATGTCTTTCAGAATTTCCCTCAAATAGCTTTTATGAAGGCACCTTGCAAAATGGAGTCACTGTTAATGAAAGGCAAACATCAGG AATTGATTTTCCATGGCCTGTGCCAAACCGTCCCATGTTCTTTTATGTTCAGATGGGACAAGAAGAGATAAGTGCAAGTGGAACATCTTATTTAAATAGG ACCGAGGCTGCAAATGTTGAAAAGATTGTAACCACTTTCTTAAAAAGTGGCGTGGTCCCGAGTCAGATCGGTGTGATAACACCTTATGAGGGGCAAAGAG CTTATATTGTGAACTATATGTCAAGAAATGGTTCTCTCAGACAGCAACTTTATAAGGAGATTGAGGTTGCCAGTGTTGATTCCTTTCAGGGGAGGGAGAA AGACTACATCATTCTTTCATGTGTTAGAAGTAATGAACACCAGGGCATCGGGTTTCTGAATGATCCGAGGAGGCTCAATGTTGCTTTGACTCGAGCGAGA TATGGTATCGTTATTCTGGGAAACCCTAAAGTTCTAAGCAAGCAACCCCTGTGGAATGGCTTATTGACACACTATAAGGAACATGAATGCTTAGTAGAAG GGCCTTTGAACAATTTGAAGCAGAGCATGGTTCAATTCCAGAAACCCAAAAAAATTTACAACGAACGGAGGCTTTTTTATGGGGGTGGACCTGGAATTGC AGCTAATGACAATTTTGGTTCTGGTGCAACTTCAGATCGAAGGATTGGCCGAGGAAGAGGATCTTATATACCTCCTGGCCCAACAAATGGAACCCATAAG CCTGGTGTGCATTCTGCTGGGTATACTCTGCCTAGAGCTCCCTTGCATCCTTTTCATGGTGGCCCCCAATCTCAACCATATGCAATTCCATCTCGTAGAG CTGTACATGGACCCGTTGGGGCAGTTCCTCATGTACCGTCTCCAGGGAGTCGAGGTTTTGGGGCTGGCAGAGGTAATACCGGTGCTTCAATTGGCAACCA TCTTCCGCACCAGCAAAGTACACAGCAACCTGTTGGGAATATTGGATCCACATTTAACTTCCCTGCTTTGGAAAATCCTAATAGCCAGCCATCTGTTGGC GGTCCATTTTCTCAACCTGGATTTGCTAATAATATGCCAGTCCAAGGGGCAAGCCAATCATTTCGTGATCAGTTTTCTGTGCCTGGAATGTCTCAGGACT TCTTGGGTGATGACTTCAAAAGCCAGGGATCTCTTGTTCCGTATAACGTTGCTGATTTCTCTACACAGGCTTCTCAATCTGCATATGCTGTTGATTATGC TACACAAGGAGCACAAGGTGGATTCCCGGGGAATTTCCTGAACCAGAATTCTCAAGCTGGGTATCCGCGTTTTGGTTCTGGAAATGACTTCATGTCTCAG GACTACATGGCCCATGGATCACCAGATCTTTTCACTCAGGCTGGATTCAGTGATCACTTACAAGATGATGCAACACAGAGCCATTTCAGTGTGGCCAATC CCAATGCTCTTCAGTCTCAGATGAATTCTCTCTATTCCCAGCCTTTTGCTCACTACAACACACAACCGCCGAACTTGCAGGCTTCCCAACAGCAGTCTCA GGGTCAGGGCTCTCAAAATCAGAAAATTCACTATAATGGTTAAGGAACTTTAAGAGCTTAATATGGCTTTGATGGGTTTTTTGTTGTTGCAATCAGCAAA CTGGGTTTGTTCCTGTCTTCTTTGCGATGGCTTTCTTGGGATCTCTGTCTGCATAACCCATATTTGATGGATTGGTATTATATGATTTGATTTGGTGGAA TTGTGGGGCATTAAGAAGGATACAAGCTGCTCATCTTGGGCAAGAAAAAGAAGGATAACCCGTTACCTTACTGAAATTTTTTAAGGTGAAATTATTCGAG CTAGCATTACATGGAATGGTTTTGTCAAAAGGGTCTCTCTATCTTGAAGCATAAGGGACGG
• Tissue: pods
• Gene name: LI_gene_195592;
• Additional information: details;

Expression of Ll_transcript_481791

FPKM

• PAB: 1.7
• PNAB: 1
• PS1: 2.7
• PS2: 3.4
• PS3: 2.5
• PW1: 2.2
• PW2: 2.2
• PW3: 4.8

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_481791

• Blastp: Regulator of nonsense transcripts 1 homolog from Arabidopsis with 82.08% of identity
• Blastx: Regulator of nonsense transcripts 1 homolog from Arabidopsis with 82.67% of identity
• Eggnog: Helicase(COG1112)
• Kegg: Link to kegg annotations (AT5G47010)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019445009.1)
• Pfam: RNA helicase (UPF2 interacting domain) (PF09416.9)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;