Ll_transcript_479816

• Id Trinity: TRINITY_DN52792_c5_g4_i3
• Name Transcript: Ll_transcript_479816
• Sequence: GTTTTTCTTCTTTAATCTAGTTTAGTCATGCTCATCTAACTGCTATTGATCAATAAGTATCAAATATGGCAATGGTTACTGCTTCATGCAACTTAGTCTC CAGAAGTTCTCAACTCCACCATGCACCAACTATCTCATATGAATCAAAACCTGCACCAATGGGACTTAGATTTCTAAAGCAGACAAATACTCATAATGGA CTTAGGATTTTGAACTCGGTGGATGAGCTTCTAAACAGAATCCCAAAAAAAGTTAATGCAGCACAAGCTAGGAAGAAAGGACTTCAAAGCAAGAATGTTA GGCCTAAAGGTACCATCATATGTGGCATGAATTTGATATTTGTAGGAACTGAGGTTGGTCCATGGAGCAAAACCGGAGGGTTAGGAGATGTTCTTGGAGG TCTGCCACCAGTTTTGGCAGGTAATGGGCATCGAGTTATGACAATATCTCCGCGTTATGATCAGTACAAAGATGCATGGGATACAAGTGTTACAGTTGAG GTAAAAGTAGGAAATAGAACAGAAAAAGTTGGCTTCTTCCATTGCTATAAAAGAGGAGTTGATCGCGTCTTTGTGGATCATCCACTATTCCTTGAAAAGG TCTGGGGGAAAAGTGGGACCAAACTTTATGGACCTTCTGCTGGAGATGATTACGAAGATAATCAACTACGTTTCAGCCTGTTCTGTCAGGCAGCTTTGCT TGCACCAAGGGTTCTGAATCTTAAGGAAAGTAAATATTTCTCAGGACCATATGGCGAAGATGTTATTTTCATTGCCAATGATTGGCACACTGCTCTTCTC CCATGCTATTTGAAAACTTTGTACCAACCATTGGGCATCTTTAAGAATGCTCGAGTTGTATTTTGTATCCACAACATTGCTTACCAAGGAAGATTTCCAT TCGCTGACTTTTCACTTCTCAATCTCCCAGACCAATTTAAAAGTTCCTTTGATTTCATTGATGGGCATGTTAAACCGGTGATTGGAAGGAAAATCAATTG GATGAAAGCTGGAATTGTGGAATCACACCAAGTGTTAACTGTCAGTCCATACTATGCTGAAGAACTAGTGTCAGGCCCGGATAAAGGGGTTGAGTTGGAC AACATTCTTCGCAAAACTGGTATTATTGGAATTGTGAATGGCATGGATGTTCAAGAGTGGAATCCATCAACTGATAAATACATAACTGTCAAATACACTG CTACAACTGTATTGGAAGGAAAGGCTCTTTTGAAAGAAGCCCTCCAAGCCGAAGTTGGATTGCCGGTAGACAGAAAAATTCCTCTCATTGGTTTCATCGG TAGGCTTGAAGAGCAAAAAGGTTCTGATATTCTTGTAGAAGCCATTCCTCAATTTATCAATGATGATGTTCAGATAGTAGCCCTTGGAACAGGAAAAAAA CAAATGGAAAAGCAGCTTCAACAGCTTGAAGTAGCATACCCTGACAAGGCCAGAGGAGTGGCAAAATTCAATGTTCCCCTAGCACATATGATAATTGCTG GAGCTGATTTTATATTGATTCCTAGCAGATTTGAGCCTTGTGGTCTCATTCAGTTACAAGCTATGCGCTATGGAACCGTACCACTTGTTGCCTCAACTGG TGGACTAGTCGACACAGTTAAAGAAGGTTTCACTGGATTTCAGATGGGTGCCTTCAATGTCGAATGTGAAACTGTGGATCCAGCTGATGTGGATGCTTTG GCTAAGACTGTCAAAAGGGCTCTTGTAGTTCATGGAACTCCAGCTTTTACAGAAATAATCCAGAATTGCATGGCTCAAGATCTTTCATGGAAGGAACCTG CTAAGAAGTGGGAGGAAGTGCTTCTAAGGTTGGGAGTTCCTGGTAGTGAAGCTGGAATTGATGGTGAAGAAATTGCTCCGCAGGCAAAGGAAAATGTGGC AACTCCATAATAATAACAAAACGTGAGGGAAGTTTCAGCTATACACTGAATTTGGTGAAGTTTCCAGCATAACACTTTTTATTATGTTTTAATTCTACTT CCATTTTTCGAGTATGAAAAGAGAGAACCTTACTTTTTTTATCACAAAAAAGGAGGCATGGAGAGAAGGGTAGTTCATCATAGTAAAAGATTGATGGGTG GTTGCTATGAAGCACAGATACGGATACGTGTATCGGATACGATACGTATCTGATACGTCGACACGCATTTTTTCTAAAATATAGGATACGAC
• Tissue: pods
• Gene name: LI_gene_195653;
• Additional information: details;

Expression of Ll_transcript_479816

FPKM

• PAB: 3
• PNAB: 14.3
• PS1: 7.8
• PS2: 2.6
• PS3: 8.7
• PW1: 20.2
• PW2: 5.8
• PW3: 3

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_479816

• Blastp: Granule-bound starch synthase 1, chloroplastic/amyloplastic from Solanum with 72.4% of identity
• Blastx: Granule-bound starch synthase 1, chloroplastic/amyloplastic from Solanum with 72.4% of identity
• Eggnog: starch synthase activity(COG0297)
• Kegg: -
• CantataDB: Link to cantataDB annotations (CNT0001477)
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019422043.1)
• Pfam: Starch synthase catalytic domain (PF08323.10)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;