| Id Trinity | TRINITY_DN52792_c5_g4_i5 |
|---|---|
| Name Transcript | Ll_transcript_479828 |
| Sequence | CCGGAGGGTTAGGAGATGTTCTTGGAGGTCTGCCACCAGTTTTGGCAGCTAATGGACATCGCGTTATGACCATTGCTCCATGTTACGACCAGTACAAAGA TGCATGGGATACAAGTGTTACAGTTGAGGTAAAAGTAGGAAATAGAACAGAAAAAGTTGGCTTCTTCCATTGCTATAAAAGAGGAGTTGATCGCGTCTTT GTGGATCATCCACTATTCCTTGAAAAGGTTGGAATGTTTCTTTATTTTTCAGCTATAAATTTAGTGTTTTGATTTCAGAAGCTTAGTAATGGCTGAACTT CAAGGTCTGGGGGAAAAGTGGGACCAAACTTTATGGACCTTCTGCTGGAGATGATTACGAAGATAATCAACTACGTTTCAGCCTGTTCTGTCAGGTTATA TATCCTTATCCTTGTGGCTGCACGAGTTTTAGGTTCAGATGTTTGCCTCAGACATTTCTGCGTAAGTGCAGCAATGTTACCTATATTCAAATTATATGAT GGATTAAGTTATATATGATCTTTGAAATAACATATCACCACCTAATATGTCCGTATATACATCTGAGGTCAGATTTCTTTAACTCAGTAGGCCTTCCATT AATCTCATTGGTCATATTTCTCTTCAAATTAACTTTGCAGGCAGCTTTGCTTGCACCAAGGGTTCTGAATCTTAAGGAAAGTAAATATTTCTCAGGACCA TATGGCGAAGATGTTATTTTCATTGCCAATGATTGGCACACTGCTCTTCTCCCATGCTATTTGAAAACTTTGTACCAACCATTGGGCATCTTTAAGAATG CTCGAGTTGTATTTTGTATCCACAACATTGCTTACCAAGGAAGATTTCCATTCGCTGACTTTTCACTTCTCAATCTCCCAGACCAATTTAAAAGTTCCTT TGATTTCATTGATGGGCATGTTAAACCGGTGATTGGAAGGAAAATCAATTGGATGAAAGCTGGAATTGTGGAATCACACCAAGTGTTAACTGTCAGTCCA TACTATGCTGAAGAACTAGTGTCAGGCCCGGATAAAGGGGTTGAGTTGGACAACATTCTTCGCAAAACTGGTATTATTGGAATTGTGAATGGCATGGATG TTCAAGAGTGGAATCCATCAACTGATAAATACATAACTGTCAAATACACTGCTACAACTGTATTGGAAGGAAAGGCTCTTTTGAAAGAAGCCCTTCAAGC AGAAGTTGGATTGCCTGTAGACAGAAATATTCCTATCATATGTTTCATTGGTAGGCTTGAAGAGCAAAAAGGTTCTGATATTCTCGTAGAAGCCATTCGC CAATTTATTAAGGAGAATGTTCAAATAGTAGCCCTTGGAACAGGGAAAAAACAAATGGAAAAGCAGCTTCATCAGCTTGAAGTATCATACCCTGACAAGG CCAGAGGAGTGGCAAAATTTAATGTTCCCCTAGCTCATATGATTATCGCCGGAGCTGATTTTATATTGATTCCTAGCAGATTTGAGCCTTGTGGTCTTAT CCAATTACAAGCTATGCGCTATGGAACTGTACC BLAST |
| Tissue | pods |
| Gene name | LI_gene_195653; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_479828
| Blastp | Granule-bound starch synthase 1, chloroplastic/amyloplastic from Manihot with 77.56% of identity |
|---|---|
| Blastx | Granule-bound starch synthase 1, chloroplastic/amyloplastic from Manihot with 77.56% of identity |
| Eggnog | - |
| Kegg | - |
| CantataDB | Link to cantataDB annotations (CNT0001477) |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019454627.1) |
| Pfam | Starch synthase catalytic domain (PF08323.10) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |