| Id Trinity | TRINITY_DN52810_c1_g2_i1 |
|---|---|
| Name Transcript | Ll_transcript_493852 |
| Sequence | CTAGGGTAGCCGTTAGAAAGGGTGTGGTTTCCCAAGCGGTGCAGTTGGCAGCAGATAGTGGAGGACAGCTGGCCTCCTTGGACGGCTGGATTTGAGTTGG CGCCATATCTGAGGAGTGCATCCACGGTCCAGATTTGGTCACAACTGTGGAGTTATTAGGAGCAGCTTTTGTGGCAGTAATTATAGGCTTTTGGAACCGT GTAGCAGAGGTGTGCAAAGAATCACACGACTCATTAAAAACAACAGCATCCAACCGTGGAAATTGAAGTGGGTGCTCTGCACGAGGGAAAGTACTTGAAG ATGCATTTGAATTCCGTGAAGGAGTGTTAATACTCCCTTTATGCTCCTTCAAAGTGCCATTTGAAAATTGCTTTCTCTCTCCACTCGGTTCACTCTTAGA GAAAAAAATTTATTCTCTTTGTTTTTCCAACTCAGTGAGCATTTTGGGATTGTGAGTGGAAGAGATGTGCACCAATGTGGTGGCTGGTTGTTCATTACCC TCAAACATGTCCCTTCCCTTCTTCCCAAACAAGCCCTTTTCATTCGTCTCAAACACATGTGGTGGTGTTCTTCTTCCCTTGTTACGGTCATGCTCCAAAG TGGTGGTTGTCGTTTCATGACCCTCCGCTGGATTTAAAAACTCCAGAGGTAGAACAATGTTTTGTTTTCCGGTTGACCATGAAAATGTCGTAACACTGAG ACGTGGAAAACCGGATGAATGCGAGAAGATTGTGGAAGATCGAGCTTATAAGCAACAGGTCCAACACGATGGAGCACAAAAAATGGGCCATAAAACAGAC GGGCCAACTTTTGAGAGGTACGCCGCTGTACCGACTGTTGACGATACGGTTGGAGGTGGAGCAACACCCATTCTCCCGGTTCAAAGGGTGTCTAGAACAG AGGGATGTGAAACCGATCCAAGAATGTGGTCTCTTAATGTCGGAGGAGGCCGACCATACAACTCTTCGAAAGGAGATATTTGTATGGATGAGTGCCGGTT GGTGTTATACCAGTACTCCGCCAAGGGAAGCTGGGTGAACCACTTGGTGGGATGTGATCCAGTGAAGCAGCGGAAGTATGTCTACAGCCCTCTATTCACA ACCTCGGTTTGTCCGTCAGATTGAGGGTGGTAGGCGGTGCTGAAGCACAAGCAAGTACCCAGGAGCTTAAAAAGCTCCTTCCAGAATCCACTGACAAAGA TTTTGTCCCTATCCGAGACAATGCTTTTTGGAACACCGTGAAGTTTACAAACTTCATTCAAAAAAGGCGAGCAAGGGTGTCTGCCGAGAAGTGAGTGGGT AGCCCAATGAAGTGAGCATACTTTGTCAGTCTATCCATAACTACCTAGATCACGGTATGGCCATGTGATGAAGGTATTTGTTATATTGGCAGATGGTACA TTGACGAATGAAATCCTTGACTTTCTTAGTCAGTCCGGGCCAATAGCATGATGCAGCTAAACAGGCCACGATTGGTTTCCATCCAGAGTGACCTGCAGTA GGTGTTTCATGAAACTCTTTCAACAATGAGAGATGGAGATCGGCAACATCAGTGCCAGATCTTATCCAATAACAACGGAAAGGAGGTGGATAGAGCACAA AAGAGGGTAGGTTAGGGCTCAGCATCAAATCCAATCAACTTTGTGGCCCATTTTTGCTGTTCAGGGATTCCGTGACCGCGAACATCTCACGCACATAAGC AGATGCATGTTGCATGCGCGGAGACATCTTTCTACTGAAAAAAGCAAGCGGATGACCTTCTTGGGAGAGGACGACTCCAATGGCAGTAGCTGATGCGTCA GTCTCCACCACAAATAGCTTAGAAAAATCCGATAGATGCAAAACCGATATGGTAGTCATTGTTGTTTGTAATTTTGTAACGGCCTCCTGAGCCTCTGTGG GCCATGTAAAATTCTGTAACTTAAGCAAATCGGTGAGGGGAGAGGCGTGTGCGGCGTAGTTCTTGACAAATTTCCGATAAAAACCGGTGAGGCCAAAAAA ACCCTGAGTGTTGTGTGAGACCGTGGTTGCGGCCAGTGAACCATAGCTTGTATCTTTTCTGGATCAAGTTACACTCCACCATATGGCCTAAGTAAGTAAC AGTAGGCACTCCCAAGGTGCATTTAGACAATTTGGCATAAAACTTGTTAGTAACCAATAGGTTCAAAATGGTATCCAAATGCACAACATGGTCATTTAAA GTAGAGCTATATATTAGAATATCATCAAAGAAAAGAAGAACGAACCGGCAAAAATGTGGGTGCAATAGATCATTCATTGCCACTTGAAAAGTGGCCGGGG CATTGGTGAGGCTGAAAGGTATAACCAAGAACTCACAATGACCATCAAAAGTTCGGAAAGAAGTCTTATGAGTATCTTCAGGTTTCATTGGAATCTGATG ATAGCCCGATCAAGGATAGATCTTTGAAAAAATTGTTGCGCTCCCTAATTCATCCAATAATTCATCAATTGTCGTAATTGGGAAGCGGTCACGAACTATG ATTGCATTCAGAGCGCAGTAATCCACACAAAACCGCTATGTGCCATCTCTTTTTTACCAATAAAACTGGTGATGAAAATGGGCTAGTACTAGGTGTAATA ATTCCATCTTTCAGCATATCTGCAATCATAGTAGTCATGGCTTCTTTTTGGGAATGAGGGTAACGGTAAGGTTTGAGGGAAATTGGGCTAGAGTTAGGTT GTAAGGTGATGGAATGGTCATGAGGGCGGGATGGGGGTAAGCCGTGAGGGCGTTGGAAAATGTCGTTGTATTTGGTGAGGACAGTTTGTATGGGAGGGTG AGTGGTTTTAGGCTGGTCTGTATGAAGTGTGGTTGTTGGTTGTAAGGGTATAAAAATCAATGTGTGGAAAGAAGCCACTGAATCTGTGTGAAGTAGACGA GTTAGTTGGTGTAGTGAGGATTGAGTAATGGGGGTTGTGGTATCCCCTTGGAGAGTAAGAGAATCATTCCCAACCTTAAAGGTCATTGACAGAACAACAA AGTCTGAAATAATAGGTCCCAAGGTGCGCAACCACTCAATTCTCAGTACTACATTTGCACCTTTAATGGGTAGCAAATAGAAGGGAATATGAAATAATTT GTTTTGAAGAACAATGAGAGTATCAGAGCACAAACCCGTGCAATAAATGTGAGCTCCATTACCAACCATCACTGGAAATTTTGGTGTCGGAGTTATGTTT AGTTGCAAGTGATGAGCAAGACGTGGTTGTAGAACATTGTGTGAACTGCCTGTGTCGACTAGGACCATAACAGCCTGCCCTACAATGGAACCCGTAAGCC GAAGGGTTTTTTGGGATGGCTGGCCTTCGAGGGCTTGTTTGGACAATTGAAAATGAATTAGATCCTCTATAGGTTGAACATTTTCAACTGCCACTGGTTC AAGAGAAATCAACAAATCTTCAGAAGTGGCAGATAAGTCATACACTAGAAGGAGTACAAACTGTCGACCTTGGCAGATGTGACCGGTTAGATATTTTTCG TCACAATTATAGCACAAACCTTGAGCTCGTCTTTCTTGCATTTGGGCAGTTGTGAGACGCCTAATAGGCATTATGGAAACTGTGTTACTGTTGCCTACAG ATGAAACTGAGTGGGCACGTTGGTTTGGTACTGGAAAATTGTTTGTCCTAAATGGTCGAGGAAGTGCTGGTTTAGCGTCTTTGATTTTGGATTCCACCAA CTTGGCCAACCCCAATGCTTCTACCATATCTGTAGGTCTAAGAATAGTTAATTCTCGCCTAATCTCAGGTTGTAATCCTGACAGGAAACAATTGAGAATA GACTCCGATGACAGCCCCCAGACTCTGCTATTAATTTGTTCAAACTTTTTTTGATAGGCAGCCACAGTTCCTGTCTGACATAGCTTAAAGAGTTCTGCTT GGTGATTGTCATAAGTAGAGGGACCAAAATAAATTTCCAGCGTGCGGGTAAAAGTTTCCCAATCTATGAATTCCCATTTAAAAATGCCCATTTATACCAA CTTAAAGCCTCACCTTTCATATGAAAAGAAACAATATGCAACCGCTGGTCAGGTGGAATTTGATAGTACTGAAAAATTGTTCTGTGTGGAACAACCAGTC CAGAGGGTCTGAACCATCAAAGGGAAGTAGTTGAAGTTTAGGTGAGTTAGGGGCCTGTCCCATATTGGAACGTGGGCAAGGGTTTGTGGGGTTAAAAAAA GGGGCTACTGGTGTTTGTGGAAAAGTTGGGTAAGAGGTAGGTATTTGTTATGGTGAGTGAGACGTGGAAATGTGTGGGTTAGGAATAGTAAAAGGTGTGT GAGGGTTAGGGTTTGAGATGTGAGAAGTTGAAGCCATAGTGGGTGGATCAGGTGGTTGTGGGGGTAAAGAGGAAGAGGAATTCATACCTGCCACTTTTTT AGTGATGATACGAAGAGATTCAACAATTAATTCATGTCGTTCATCTTGTTGGTCCTTGTTTTCTTTCAACTTGTCTGCAAAAATTTGCAGAAGAGATTCA TCAACCTCCTTGGTGGAATTCTTGGGAGGCATAGAGCAAGAATGAAAACACCAAATGATAGGATTTTGTTAGAAAATTGGATTGAAAATGAGAAAATAAT TGCAGAACAGAGAAAATTAAGAAAATAATAATTCATTCATGCCTCCAGTAGCTAATTCTGTCCAGATAAATACAGATAGCTAGGGAAAATTAGGGTTACT ACTAAAGGGTTTGGGCTTACAACACTGGCCCAAACCTACAACAACTAATTTCTTTAACAATAAAAATAAGATATTACTCCTCCATAATAAAGTCAGAGAA CCAAACAGGCTTAGTCTTCATTCTATTGGGCCTTGTAACCGGGTTATTATCACATTATTGAGAGTCGTAGTGGTAACAGGAGGTTAAACACCTAGTTGGT GCCTCATATTTTGTTTAATAGAACTCAGTAGTGCTAAGGATTGTTGTGAACCCTGTTTAAGGTAAAATTTAAATATCTCATCTTTTATTCGTTATGGCAT TTTGCTTGTGCTTCAACTTATTGAGCGTAAAAATTATTGTGGAGCATAATGATGTCCTATGGGCCAATTCTAGGCTAATAACATATTTGCCTATATTCCA ATGAATAGGGTTGTATTAGGACCTCTCTAGCTAAATTCTATTAGGACCATGAATTCATAGTTTTTTCGTTTTAGTTATTATCTCAGACTCAACATTCAAG CAGATTTTTTATGTTTCTCACATGCATTGTCGCACTGGACGCAATCATGTCTGAGCCAGAAATATCCTATAAGAGAAGGAGAAACAGAGAAATGGAAAAA GAAACCAGAAAGCATAGAGATAAATAGAAGAATAATGTAAAGATAAAATGTAAAAATGAGTCTTTATTTAATATATCTAAAAGGATAGGGGCTAGCCCTA TTTATACAAATGAAAGAGGAAATATCTAAAACAGAAAAGTGTAAATGATTAGTTACTTAGAAACAGAATTATAACTAATCAGTTACTAAAGTATTAAGCA CATGCTTTATTCTAATATTCCCCCTGAAGCCAAGACTCCTCTGATAATGTAAAATAACTTTAATCATGAGAGTTGTAGACTTGAATTCTGAGCTGGTTTC TGAGAGTAGCAACCTGCAAGTTAGGTAGAGGCTTTGTAAGGATGTCCGCTGTTTGGAATTCGGAAGGGATGTGCTTAACAGTGAGGGTTTTATTTTGAAT TTTGTCTCTGACAAAAAATAAATCTAACTCAATGTACATAGTTCTGTTGTGCAACACTAGGTTATGAGACATAGCCACTATACTCAGATTATCACAGAAT ATGATCGGTGTTTGATGAGGAACTTGCAATTCTTTTAGAAGAGACTCAACCCACATAATTTCTTGAGATGCCAAAGCTAAGCTTCTATATTCAGCTTCTG TGCTTGATCTAGAGATAATATTTTGCTTCATGGACCACCATGTCACGATATTAGGTCCCAAATATAAGCAAGCTCCTGAAGTAGATTTTCTGTCATCAAT ATATGATGCCCAATCAGCACCACAAAAGGCCACAACCGATATGGCAGAATTAGACTTGGCAGGTTTAACAATTAGACCCATAGATTGAGTTCCTTGTAGG TATCTAAGAATTCTTTTGACCACGGTCCAATGAGAGTTTAGAGGTTTTTCCAAGAATTGACAAACCTTGTTCACAGAAAATGAGATATATGTTCTTGTGA CCGTGTCATATTGTAGTGCTCCAACAATTGACCTATAAAAGGTTGGATCTTCAAAGAAATTTGTGCCATGCTTAGTGAGTTTGCAATTACTAGCCATTGG AGTAGGAAGAGATTTGGACTCAGATAGCTTGGATCTTTCAAGTAAATCTCTGATATATTTGGTTTGAGAGAGAAATAGAGAACCATCCTTTTTATGCTTG ACTTCAATTCTAAGAAAGTAGTCCAGAGGTCCTAGTTGTTTGAGGGAAAATGTGGAGCTAAGATCTTTTATGAGATGTTGCACAGGAATAGGAGAAGATC CACTGACAACGATGTCATCCACATATACTAGAACATATAGTTTTTAGGTCTTGGAGGTGTAAATAAAGAGAGAGTTGTCGCACTTGCTTATTTGAAAGCC TAAGTTGAGTAGAGAACCTTTTAGCCTTCCAAACCATTGTCGAGGTGCTTGTTTAGATCATAAATGGCGTTGTGAAGCTTGCAGAGTAAGGTTTTATCCT GATGTTGAAAACCAGATGGTTACGTCATGTAAACTTCTTCATTAAGAATGTCATTTAGAAAGGCATTGTTAATGTCTAGTTGCTCAATCATACAGTGATG TAACACTGCAAGAGTCATAAGGATCCTAATTGTTATGGGCTTGCCACTGGTGAAAATGTCTCATTATAATCCACTCATTGTTTCTGATGAAACCCTTTAG CCACTAATCTTGCCTTGTATTTATTGATCGTCCCATCCGGGTTTTCTTTGAATTTGAAAACCCATTTACATCCAATAGCATGTTTATTAGGAGGTAGAGG CATGAGAGACCAAGTTCCTAGGGCCATGAGAGCATA BLAST |
| Tissue | pods |
| Gene name | LI_gene_195841; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_493852
| Blastp | Retrovirus-related Pol polyprotein from transposon 412 from Sophophora with 25.32% of identity |
|---|---|
| Blastx | Retrovirus-related Pol polyprotein from transposon TNT 1-94 from Nicotiana with 32.68% of identity |
| Eggnog | - |
| Kegg | - |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019459949.1) |
| Pfam | Retrotransposon gag protein (PF03732.16) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |