Ll_transcript_493853

• Id Trinity: TRINITY_DN52810_c1_g2_i2
• Name Transcript: Ll_transcript_493853
• Sequence: CTAGGGTAGCCGTTAGAAAGGGTGTGGTTTCCCAAGCGGTGCAGTTGGCAGCAGATAGTGGAGGACAGCTGGCCTCCTTGGACGGCTGGATTTGAGTTGG CGCCATATCTGAGGAGTGCATCCACGGTCCAGATTTGGTCACAACTGTGGAGTTATTAGGAGCAGCTTTTGTGGCAGTAATTATAGGCTTTTGGAACCGT GTAGCAGAGGTGTGCAAAGAATCACACGACTCATTAAAAACAACAGCATCCAACCGTGGAAATTGAAGTGGGTGCTCTGCACGAGGGAAAGTACTTGAAG ATGCATTTGAATTCCGTGAAGGAGTGTTAATACTCCCTTTATGCTCCTTCAAAGTGCCATTTGAAAATTGCTTTCTCTCTCCACTCGGTTCACTCTTAGA GAAAAAAATTTATTCTCTTTGTTTTTCCAACTCAGTGAGCATTTTGGGATTGTGAGTGGAAGAGATGTGCACCAATGTGGTGGCTGGTTGTTCATTACCC TCAAACATGTCCCTTCCCTTCTTCCCAAACAAGCCCTTTTCATTCGTCTCAAACACATGTGGTGGTGTTCTTCTTCCCTTGTTACGGTCATGCTCCAAAG TGGTGGTTGTCGTTTCATGACCCTCCGCTGGATTTAAAAACTCCAGAGGTAGAACAATGTTTTGTTTTCCGGTTGACCATGAAAATGTCGTAACACTGAG ACGTGGAAAACCGGATGAATGCGAGAAGATTGTGGAAGATCGAGCTTATAAGCAACAGGTCCAACACGATGGAGCACAAAAAATGGGCCATAAAACAGAC GGGCCAACTTTTGAGAGGTACGCCGCTGTACCGACTGTTGACGATACGGTTGGAGGTGGAGCAACACCCATTCTCCCGGTTCAAAGGGTGTCTAGAACAG AGGGATGTGAAACCGATCCAAGAATGTGGTCTCTTAATGTCGGAGGAGGCCGACCATACAACTCTTCGAAAGGAGATATTTGTATGGATGAGTGCCGGTT GGTGTTATACCAGTACTCCGCCAAGGGAAGCTGGGTGAACCACTTGGTGGGATGTGATCCAGTGAAGCAGCGGAAGTATGTCTACAGCCCTCTATTCACA ACCTCGGTTTGTCCGTCAGATTGAGGGTGGTAGGCGGTGCTGAAGCACAAGCAAGTACCCAGGAGCTTAAAAAGCTCCTTCCAGAATCCACTGACAAAGA TTTTGTCCCTATCCGAGACAATGCTTTTTGGAACACCGTGAAGTTTACAAACTTCATTCAAAAAAGGCGAGCAAGGGTGTCTGCCGAGAAGTGAGTGGGT AGCCCAATGAAGTGAGCATACTTTGTCAGTCTATCCATAACTACCTAGATCACGGTATGGCCATGTGATGAAGGTATTTGTTATATTGGCAGATGGTACA TTGACGAATGAAATCCTTGACTTTCTTAGTCAGTCCGGGCCAATAGCATGATGCAGCTAAACAGGCCACGATTGGTTTCCATCCAGAGTGACCTGCAGTA GGTGTTTCATGAAACTCTTTCAACAATGAGAGATGGAGATCGGCAACATCAGTGCCAGATCTTATCCAATAACAACGGAAAGGAGGTGGATAGAGCACAA AAGAGGGTAGGTTAGGGCTCAGCATCAAATCCAATCAACTTTGTGGCCCATTTTTGCTGTTCAGGGATTCCGTGACCGCGAACATCTCACGCACATAAGC AGATGCATGTTGCATGCGCGGAGACATCTTTCTACTGAAAAAAGCAAGCGGATGACCTTCTTGGGAGAGGACGACTCCAATGGCAGTAGCTGATGCGTCA GTCTCCACCACAAATAGCTTAGAAAAATCCGATAGATGCAAAACCGATATGGTAGTCATTGTTGTTTGTAATTTTGTAACGGCCTCCTGAGCCTCTGTGG GCCATGTAAAATTCTGTAACTTAAGCAAATCGGTGAGGGGAGAGGCGTGTGCGGCGTAGTTCTTGACAAATTTCCGATAAAAACCGGTGAGGCCAAAAAA ACCCTGAGTGTTGTGTGAGACCGTGGTTGCGGCCAGTGAACCATAGCTTGTATCTTTTCTGGATCAAGTTACACTCCACCATATGGCCTAAGTAAGTAAC AGTAGGCACTCCCAAGGTGCATTTAGACAATTTGGCATAAAACTTGTTAGTAACCAATAGGTTCAAAATGGTATCCAAATGCACAACATGGTCATTTAAA GTAGAGCTATATATTAGAATATCATCAAAGAAAAGAAGAACGAACCGGCAAAAATGTGGGTGCAATAGATCATTCATTGCCACTTGAAAAGTGGCCGGGG CATTGGTGAGGCTGAAAGGTATAACCAAGAACTCACAATGACCATCAAAAGTTCGGAAAGAAGTCTTATGAGTATCTTCAGGTTTCATTGGAATCTGATG ATAGCCCGATCAAGGATAGATCTTTGAAAAAATTGTTGCGCTCCCTAATTCATCCAATAATTCATCAATTGTCGTAATTGGGAAGCGGTCACGAACTATG ATTGCATTCAGAGCGCAGTAATCCACACAAAACCGCTATGTGCCATCTCTTTTTTACCAATAAAACTGGTGATGAAAATGGGCTAGTACTAGGTGTAATA ATTCCATCTTTCAGCATATCTGCAATCATAGTAGTCATGGCTTCTTTTTGGGAATGAGGGTAACGGTAAGGTTTGAGGGAAATTGGGCTAGAGTTAGGTT GTAAGGTGATGGAATGGTCATGAGGGCGGGATGGGGGTAAGCCGTGAGGGCGTTGGAAAATGTCGTTGTATTTGGTGAGGACAGTTTGTATGGGAGGGTG AGTGGTTTTAGGCTGGTCTGTATGAAGTGTGGTTGTTGGTTGTAAGGGTATAAAAATCAATGTGTGGAAAGAAGCCACTGAATCTGTGTGAAGTAGACGA GTTAGTTGGTGTAGTGAGGATTGAGTAATGGGGGTTGTGGTATCCCCTTGGAGAGTAAGAGAATCATTCCCAACCTTAAAGGTCATTGACAGAACAACAA AGTCTGAAATAATAGGTCCCAAGGTGCGCAACCACTCAATTCTCAGTACTACATTTGCACCTTTAATGGGTAGCAAATAGAAGGGAATATGAAATAATTT GTTTTGAAGAACAATGAGAGTATCAGAGCACAAACCCGTGCAATAAATGTGAGCTCCATTACCAACCATCACTGGAAATTTTGGTGTCGGAGTTATGTTT AGTTGCAAGTGATGAGCAAGACGTGGTTGTAGAACATTGTGTGAACTGCCTGTGTCGACTAGGACCATAACAGCCTGCCCTACAATGGAACCCGTAAGCC GAAGGGTTTTTTGGGATGGCTGGCCTTCGAGGGCTTGTTTGGACAATTGAAAATGAATTAGATCCTCTATAGGTTGAACATTTTCAACTGCCACTGGTTC AAGAGAAATCAACAAATCTTCAGAAGTGGCAGATAAGTCATACACTAGAAGGAGTACAAACTGTCGACCTTGGCAGATGTGACCGGTTAGATATTTTTCG TCACAATTATAGCACAAACCTTGAGCTCGTCTTTCTTGCATTTGGGCAGTTGTGAGACGCCTAATAGGCATTATGGAAACTGTGTTACTGTTGCCTACAG ATGAAACTGAGTGGGCACGTTGGTTTGGTACTGGAAAATTGTTTGTCCTAAATGGTCGAGGAAGTGCTGGTTTAGCGTCTTTGATTTTGGATTCCACCAA CTTGGCCAACCCCAATGCTTCTACCATATCTGTAGGTCTAAGAATAGTTAATTCTCGCCTAATCTCAGGTTGTAATCCTGACAGGAAACAATTGAGAGTA GACTCCGGTGACAGCCCCCAGACTCTGCTATTAATTTGTTCAAACTTTTTTTGATAGGCAGCCACAGTTCCTGTCTGACATAGCTTAAAGAGTTCTGCTT GGTGCTTAAAGAGTTCTGCGGGTAAAAGTTTCCCAATCTATGAATTCCCATTTAAAAATGCCCATTTATACCAACTTAAAGCCTCACCTTTCATATGAAA AGAAACAATATGCAAGGGTTTGTCCCATATTGGAACGTGGGCAAGGGTTTGTGGGGTTAAAAAAGGGGCTACTGGTGTTTGTGGAAAAGTTGGGTAAGAG GTAGGTATTTGTTATGGTGAGTGAGACGTGGAAATGTGTGGGTTAGGAATAGTAAAAGGTGTGTGAGGGTTAGGGTTTGAGATGTGAGAAGTTGAAGCCA TAGTGGGTGGATCAGGTGGTTGTGGGGGTAAAGAGGAAGAGGAATTCATACCTGCCACTTTTTTAGTGATGATACGAAGAGATTCAACAATTAATTCATG TCGTTCATCTTGTTGGTCCTTGTTTTCTTTCAACTTGTCTGCAAAAATTTGCAGAAGAGATTCATCAACCTCCTTGGTGGAATTCTTGGGAGGCATAGAG CAAGAATGAAAACACCAAATGATAGGATTTTGTTAGAAAATTGGATTGAAAATGAGAAAATAATTGCAGAACAGAGAAAATTAAGAAAATAATAATTCAT TCATGCCTCCAGTAGCTAATTCTGTCCAGATAAATACAGATAGCTAGGGAAAATTAGGGTTACTACTAAAGGGTTTGGGCTTACAACACTGGCCCAAACC TACAACAACTAATTTCTTTAACAATAAAAATAAGATATTACTCCTCCATAATAAAGTCAGAGAACCAAACAGGCTTAGTCTTCATTCTATTGGGCCTTGT AACCGGGTTATTATCACATTATTGAGAGTCGTAGTGGTAACAGGAGGTTAAACACCTAGTTGGTGCCTCATATTTTGTTTAATAGAACTCAGTAGTGCTA AGGATTGTTGTGAACCCTGTTTAAGGTAAAATTTAAATATCTCATCTTTTATTCGTTATGGCATTTTGCTTGTGCTTCAACTTATTGAGCGTAAAAATTA TTGTGGAGCATAATGATGTCCTATGGGCCAATTCTAGGCTAATAACATATTTGCCTATATTCCAATGAATAGGGTTGTATTAGGACCTCTCTAGCTAAAT TCTATTAGGACCATGAATTCATAGTTTTTTCGTTTTAGTTATTATCTCAGACTCAACATTCAAGCAGATTTTTTATGTTTCTCACATGCATTGTCGCACT GGACGCAATCATGTCTGAGCCAGAAATATCCTATAAGAGAAGGAGAAACAGAGAAATGGAAAAAGAAACCAGAAAGCATAGAGATAAATAGAAGAATAAT GTAAAGATAAAATGTAAAAATGAGTCTTTATTTAATATATCTAAAAGGATAGGGGCTAGCCCTATTTATACAAATGAAAGAGGAAATATCTAAAACAGAA AAGTGTAAATGATTAGTTACTTAGAAACAGAATTATAACTAATCAGTTACTAAAGTATTAAGCACATGCTTTATTCTAATATTCCCCCTGAAGCCAAGAC TCCTCTGATAATGTAAAATAACTTTAATCATGAGAGTTGTAGACTTGAATTCTGAGCTGGTTTCTGAGAGTAGCAACCTGCAAGTTAGGTAGAGGCTTTG TAAGGATGTCCGCTGTTTGGAATTCGGAAGGGATGTGCTTAACAGTGAGGGTTTTATTTTGAATTTTGTCTCTGACAAAAAATAAATCTAACTCAATGTA CATAGTTCTGTTGTGCAACACTAGGTTATGAGACATAGCCACTATACTCAGATTATCACAGAATATGATCGGTGTTTGATGAGGAACTTGCAATTCTTTT AGAAGAGACTCAACCCACATAATTTCTTGAGATGCCAAAGCTAAGCTTCTATATTCAGCTTCTGTGCTTGATCTAGAGATAATATTTTGCTTCATGGACC ACCATGTCACGATATTAGGTCCCAAATATAAGCAAGCTCCTGAAGTAGATTTTCTGTCATCAATATATGATGCCCAATCAGCACCACAAAAGGCCACAAC CGATATGGCAGAATTAGACTTGGCAGGTTTAACAATTAGACCCATAGATTGAGTTCCTTGTAGGTATCTAAGAATTCTTTTGACCACGGTCCAATGAGAG TTTAGAGGTTTTTCCAAGAATTGACAAACCTTGTTCACAGAAAATGAGATATATGTTCTTGTGACCGTGTCATATTGTAGTGCTCCAACAATTGACCTAT AAAAGGTTGGATCTTCAAAGAAATTTGTGCCATGCTTAGTGAGTTTGCAATTACTAGCCATTGGAGTAGGAAGAGATTTGGACTCAGATAGCTTGGATCT TTCAAGTAAATCTCTGATATATTTGGTTTGAGAGAGAAATAGAGAACCATCCTTTTTATGCTTGACTTCAATTCTAAGAAAGTAGTCCAGAGGTCCTAGT TGTTTGAGGGAAAATGTGGAGCTAAGATCTTTTATGAGATGTTGCACAGGAATAGGAGAAGATCCACTGACAACGATGTCATCCACATATACTAGAACAT ATAGTTTTTAGGTCTTGGAGGTGTAAATAAAGAGAGAGTTGTCGCACTTGCTTATTTGAAAGCCTAAGTTGAGTAGAGAACCTTTTAGCCTTCCAAACCA TTGTCGAGGTGCTTGTTTAGATCATAAATGGCGTTGTGAAGCTTGCAGAGTAAGGTTTTATCCTGATGTTGAAAACCAGATGGTTACGTCATGTAAACTT CTTCATTAAGAATGTCATTTAGAAAGGCATTGTTAATGTCTAGTTGCTCAATCATACAGTGATGTAACACTGCAAGAGTCATAAGGATCCTAATTGTTAT GGGCTTGCCACTGGTGAAAATGTCTCATTATAATCCACTCATTGTTTCTGATGAAACCCTTTAGCCACTAATCTTGCCTTGTATTTATTGATCGTCCCAT CCGGGTTTTCTTTGAATTTGAAAACCCATTTACATCCAATAGCATGTTTATTAGGAGGTAGAGGCATGAGAGACCAAGTTCCTAGGGCCATGAGAGCATA
• Tissue: pods
• Gene name: LI_gene_195841;
• Additional information: details;

Expression of Ll_transcript_493853

FPKM

• PAB: 0.1
• PNAB: 1.3
• PS1: 1.3
• PS2: 2.1
• PS3: 0.9
• PW1: 4.9
• PW2: 3
• PW3: 0.8

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_493853

• Blastp: Retrovirus-related Pol polyprotein from transposon 412 from Sophophora with 25.32% of identity
• Blastx: Retrovirus-related Pol polyprotein from transposon TNT 1-94 from Nicotiana with 32.68% of identity
• Eggnog: -
• Kegg: -
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019459949.1)
• Pfam: Retroviral aspartyl protease (PF08284.10)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;