Ll_transcript_493866

• Id Trinity: TRINITY_DN52810_c1_g2_i8
• Name Transcript: Ll_transcript_493866
• Sequence: CTAGGGTAGCCGTTAGAAAGGGTGTGGTTTCCCAAGCGGTGCAGTTGGCAGCAGATAGTGGAGGACAGCTGGCCTCCTTGGACGGCTGGATTTGAGTTGG CGCCATATCTGAGGAGTGCATCCACGGTCCAGATTTGGTCACAACTGTGGAGTTATTAGGAGCAGCTTTTGTGGCAGTAATTATAGGCTTTTGGAACCGT GTAGCAGAGGTGTGCAAAGAATCACACGACTCATTAAAAACAACAGCATCCAACCGTGGAAATTGAAGTGGGTGCTCTGCACGAGGGAAAGTACTTGAAG ATGCATTTGAATTCCGTGAAGGAGTGTTAATACTCCCTTTATGCTCCTTCAAAGTGCCATTTGAAAATTGCTTTCTCTCTCCACTCGGTTCACTCTTAGA GAAAAAAATTTATTCTCTTTGTTTTTCCAACTCAGTGAGCATTTTGGGATTGTGAGTGGAAGAGATGTGCACCAATGTGGTGGCTGGTTGTTCATTACCC TCAAACATGTCCCTTCCCTTCTTCCCAAACAAGCCCTTTTCATTCGTCTCAAACACATGTGGTGGTGTTCTTCTTCCCTTGTTACGGTCATGCTCCAAAG TGGTGGTTGTCGTTTCATGACCCTCCGCTGGATTTAAAAACTCCAGAGGTAGAACAATGTTTTGTTTTCCGGTTGACCATGAAAATGTCGTAACACTGAG ACGTGGAAAACCGGATGAATGCGAGAAGATTGTGGAAGATCGAGCTTATAAGCAACAGGTCCAACACGATGGAGCACAAAAAATGGGCCATAAAACAGAC GGGCCAACTTTTGAGAGGTACGCCGCTGTACCGACTGTTGACGATACGGTTGGAGGTGGAGCAACACCCATTCTCCCGGTTCAAAGGGTGTCTAGAACAG AGGGATGTGAAACCGATCCAAGAATGTGGTCTCTTAATGTCGGAGGAGGCCGACCATACAACTCTTCGAAAGGAGATATTTGTATGGATGAGTGCCGGTT GGTGTTATACCAGTACTCCGCCAAGGGAAGCTGGGTGAACCACTTGGTGGGATGTGATCCAGTGAAGCAGCGGAAGTATGTCTACAGCCCTCTATTCACA ACCTCGGTTTGTCCGTCAGATTGAGGGTGGTAGGCGGTGCTGAAGCACAAGCAAGTACCCAGGAGCTTAAAAAGCTCCTTCCAGAATCCACTGACAAAGA TTTTGTCCCTATCCGAGACAATGCTTTTTGGAACACCGTGAAGTTTACAAACTTCATTCAAAAAAGGCGAGCAAGGGTGTCTGCCGAGAAGTGAGTGGGT AGCCCAATGAAGTGAGCATACTTTGTCAGTCTATCCATAACTACCTAGATCACGGTATGGCCATGTGATGAAGGTATTTGTTATATTGGCAGATGGTACA TTGACGAATGAAATCCTTGACTTTCTTAGTCAGTCCGGGCCAATAGCATGATGCAGCTAAACAGGCCACGATTGGTTTCCATCCAGAGTGACCTGCAGTA GGTGTTTCATGAAACTCTTTCAACAATGAGATATGGAAATCGGCAACATCAGGTGGTGTAAAAGTGCCTGATCTTATCCAATAACAACGGAAAGGAGGTG GCTAGAGCACAAAAGAGGATTCCGTGACCGCAAACATCTCATGCACATTAGGAGATGCACGTTGCATGCGCGGAGACATCTTTCTACTGAAAAAAGCAAG CGGATGACCTTCTTGGGAGAGGACGACTCCAATGGCAGTAGCTGATGCGTCAGTCTCCACCACAAATAGCTTAGAAAAATCCGATAGATGCAAAACCGAT ATGGTAGTCATTGTTGTTTGTAATTTTGTAACGGCCTCCTGAGCCTCTGTGGGCCATGTAAAATTCTGTAACTTAAGCAAATCGGTGAGGGGAGAGGCGT GTGCGGCGTAGTTCTTGACAAATTTCCGATAAAAACCGGTGAGGCCAAAAAAACCCTGAGTGTTGTGTGAGACCGTGGTTGCGGCCAGTGAACCATAGCT TGTATCTTTTCTGGATCAAGTTACACTCCACCATATGGCCTAAGTAAGTAACAGTAGGCACTCCCAAGGTGCATTTAGACAATTTGGCATAAAACTTGTT AGTAACCAATAGGTTCAAAATGGTATCCAAATGCACAACATGGTCATTTAAAGTAGAGCTATATATTAGAATATCATCAAAGAAAAGAAGAACGAACCGG CAAAAATGTGGGTGCAATAGATCATTCATTGCCACTTGAAAAGTGGCCGGGGCATTGGTGAGGCTGAAAGGTATAACCAAGAACTCACAATGACCATCAA AAGTTCGGAAAGAAGTCTTATGAGTATCTTCAGGTTTCATTGGAATCTGATGATAGCCCGATCAAGGATAGATCTTTGAAAAAATTGTTGCGCTCCCTAA TTCATCCAATAATTCATCAATTGTCGTAATTGGGAAGCGGTCACGAACTATGATTGCATTCAGAGCGCAGTAATCCACACAAAACCGCTATGTGCCATCT CTTTTTTACCAATAAAACTGGTGATGAAAATGGGCTAGTACTAGGTGTAATAATTCCATCTTTCAGCATATCTGCAATCATAGTAGTCATGGCTTCTTTT TGGGAATGAGGGTAACGGTAAGGTTTGAGGGAAATTGGGCTAGAGTTAGGTTGTAAGGTGATGGAATGGTCATGAGGGCGGGATGGGGGTAAGCCGTGAG GGCGTTGGAAAATGTCGTTGTATTTGGTGAGGACAGTTTGTATGGGAGGGTGAGTGGTTTTAGGCTGGTCTGTATGAAGTGTGGTTGTTGGTTGTAAGGG TATAAAAATCAATGTGTGGAAAGAAGCCACTGAATCTGTGTGAAGTAGACGAGTTAGTTGGTGTAGTGAGGATTGAGTAATGGGGGTTGTGGTATCCCCT TGGAGAGTAAGAGAATCATTCCCAACCTTAAAGGTCATTGACAGAACAACAAAGTCTGAAATAATAGGTCCCAAGGTGCGCAACCACTCAATTCTCAGTA CTACATTTGCACCTTTAATGGGTAGCAAATAGAAGGGAATATGAAATAATTTGTTTTGAAGAACAATGAGAGTATCAGAGCACAAACCCGTGCAATAAAT GTGAGCTCCATTACCAACCATCACTGGAAATTTTGGTGTCGGAGTTATGTTTAGTTGCAAGTGATGAGCAAGACGTGGTTGTAGAACATTGTGTGAACTG CCTGTGTCGACTAGGACCATAACAGCCTGCCCTACAATGGAACCCGTAAGCCGAAGGGTTTTTTGGGATGGCTGGCCTTCGAGGGCTTGTTTGGACAATT GAAAATGAATTAGATCCTCTATAGGTTGAACATTTTCAACTGCCACTGGTTCAAGAGAAATCAACAAATCTTCAGAAGTGGCAGATAAGTCATACACTAG AAGGAGTACAAACTGTCGACCTTGGCAGATGTGACCGGTTAGATATTTTTCGTCACAATTATAGCACAAACCTTGAGCTCGTCTTTCTTGCATTTGGGCA GTTGTGAGACGCCTAATAGGCATTATGGAAACTGTGTTACTGTTGCCTACAGATGAAACTGAGTGGGCACGTTGGTTTGGTACTGGAAAATTGTTTGTCC TAAATGGTCGAGGAAGTGCTGGTTTAGCGTCTTTGATTTTGGATTCCACCAACTTGGCCAACCCCAATGCTTCTACCATATCTGTAGGTCTAAGAATAGT TAATTCTCGCCTAATCTCAGGTTGTAATCCTGACAGGAAACAATTGAGAATAGACTCCGATGACAGCCCCCAGACTCTGCTATTAATTTGTTCAAACTTT TTTTGATAGGCAGCCACAGTTCCTGTCTGACATAGCTTAAAGAGTTCTGCTTGGTGATTGTCATAAGTAGAGGGACCAAAATAAATTTCCAGCGTGCGGG TAAAAGTTTCCCAATCTATGAATTCCCATTTAAAAATGCCCATTTATACCAACTTAAAGCCTCACCTTTCATATGAAAAGAAACAATATGCAACCGCTGG TCAGGTGGAATTTGATAGTACTGAAAAATTGTTCTGTGTGGAACAACCAGTCCAGAGGGTCTGAACCATCAAAGGGAAGTAGTTGAAGTTTAGGTGAGTT AGGGGCCTGTCCCATATTGGAACGTGGGCAAGGGTTTGTGGGGTTAAAAAAAGGGGCTACTGGTGTTTGTGGAAAAGTTGGGTAAGAGGTAGGTATTTGT TATGGTGAGTGAGACGTGGAAATGTGTGGGTTAGGAATAGTAAAAGGTGTGTGAGGGTTAGGGTTTGAGATGTGAGAAGTTGAAGCCATAGTGGGTGGAT CAGGTGGTTGTGGGGGTAAAGAGGAAGAGGAATTCATACCTGCCACTTTTTTAGTGATGATACGAAGAGATTCAACAATTAATTCATGTCGTTCATCTTG TTGGTCCTTGTTTTCTTTCAACTTGTCTGCAAAAATTTGCAGAAGAGATTCATCAACCTCCTTGGTGGAATTCTTGGGAGGCATAGAGCAAGAATGAAAA CACCAAATGATAGGA
• Tissue: pods
• Gene name: LI_gene_195841;
• Additional information: details;

Expression of Ll_transcript_493866

FPKM

• PAB: 0.6
• PNAB: 3.7
• PS1: 4
• PS2: 5.7
• PS3: 3.3
• PW1: 7.6
• PW2: 4.4
• PW3: 1

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_493866

• Blastp: Retrovirus-related Pol polyprotein from transposon 412 from Sophophora with 25.32% of identity
• Blastx: Retrovirus-related Pol polyprotein from transposon 297 from Sophophora with 39.87% of identity
• Eggnog: -
• Kegg: -
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019459949.1)
• Pfam: Retrotransposon gag protein (PF03732.16)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;